RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 B9A039 149 aa5.67□□□□□ -1.5
LIMCH1-207ENST00000508466 RHODO00212 210 aa5.67□□□□□ -1.5
LIMCH1-207ENST00000508466 NXPH1P58417 271 aa5.67□□□□□ -1.5
LIMCH1-207ENST00000508466 ZNF493Q6ZR52 646 aa5.67□□□□□ -1.5
LIMCH1-207ENST00000508466 UBTD1Q9HAC8 227 aa5.67□□□□□ -1.5
LIMCH1-207ENST00000508466 EDA2RQ9HAV5 297 aa5.67□□□□□ -1.5
LIMCH1-207ENST00000508466 CEP192Q8TEP8 1941 aa5.67□□□□□ -1.5
LIMCH1-207ENST00000508466 MYMXA0A1B0GTQ4 84 aa5.67□□□□□ -1.5
LIMCH1-207ENST00000508466 ADARB2-AS1A8MUL3 147 aa5.67□□□□□ -1.5
LIMCH1-207ENST00000508466 C6orf15Q6UXA7 325 aaPredicted RBP5.67□□□□□ -1.5
LIMCH1-207ENST00000508466 SMRP1Q8NCR6 262 aa5.67□□□□□ -1.5
LIMCH1-207ENST00000508466 PRADC1Q9BSG0 188 aa5.67□□□□□ -1.5
LIMCH1-207ENST00000508466 SLC25A39Q9BZJ4 359 aaPredicted RBP5.67□□□□□ -1.5
LIMCH1-207ENST00000508466 NDUFA4L2Q9NRX3 87 aa5.67□□□□□ -1.5
LIMCH1-207ENST00000508466 C21orf62Q9NYP8 219 aa5.67□□□□□ -1.5
LIMCH1-207ENST00000508466 HIGD1AQ9Y241 93 aa5.67□□□□□ -1.5
LIMCH1-207ENST00000508466 SLC25A20O43772 301 aa5.66□□□□□ -1.5
LIMCH1-207ENST00000508466 ZNF474Q6S9Z5 364 aaPredicted RBP5.66□□□□□ -1.5
LIMCH1-207ENST00000508466 MAFAQ8NHW3 353 aaPredicted RBP5.66□□□□□ -1.5
LIMCH1-207ENST00000508466 ZNF714Q96N38 554 aa5.66□□□□□ -1.5
LIMCH1-207ENST00000508466 GFRA4Q9GZZ7 299 aa5.66□□□□□ -1.5
LIMCH1-207ENST00000508466 H7C1H1 209 aa5.66□□□□□ -1.5
LIMCH1-207ENST00000508466 IGHV1-2P23083 117 aa5.66□□□□□ -1.5
LIMCH1-207ENST00000508466 ATP1A1-AS1Q5TC04 95 aa5.66□□□□□ -1.5
LIMCH1-207ENST00000508466 Q8N1Y9 231 aa5.66□□□□□ -1.5
LIMCH1-207ENST00000508466 RASL11BQ9BPW5 248 aa5.66□□□□□ -1.5
LIMCH1-207ENST00000508466 HIGD1BQ9P298 99 aa5.66□□□□□ -1.5
LIMCH1-207ENST00000508466 ZNF22P17026 224 aaPredicted RBP5.66□□□□□ -1.5
LIMCH1-207ENST00000508466 TCF15Q12870 199 aa5.66□□□□□ -1.5
LIMCH1-207ENST00000508466 DTX2Q86UW9 622 aa5.66□□□□□ -1.5
LIMCH1-207ENST00000508466 OR11H6Q8NGC7 330 aa5.66□□□□□ -1.5
LIMCH1-207ENST00000508466 EEF1AKMT3Q96AZ1 226 aa5.66□□□□□ -1.5
LIMCH1-207ENST00000508466 RNF185Q96GF1 192 aa5.66□□□□□ -1.5
LIMCH1-207ENST00000508466 CXXC4Q9H2H0 198 aa5.66□□□□□ -1.5
LIMCH1-207ENST00000508466 CCL8P80075 99 aa5.65□□□□□ -1.5
LIMCH1-207ENST00000508466 FOXC1Q12948 553 aa5.65□□□□□ -1.5
LIMCH1-207ENST00000508466 NSUN5P1Q3KNT7 163 aa5.65□□□□□ -1.5
LIMCH1-207ENST00000508466 RNF182Q8N6D2 247 aa5.65□□□□□ -1.5
LIMCH1-207ENST00000508466 C14orf178Q8N769 122 aaPredicted RBP5.65□□□□□ -1.5
LIMCH1-207ENST00000508466 TRGV9Q99603 122 aa5.65□□□□□ -1.5
LIMCH1-207ENST00000508466 TRAV41A0A0B4J266 112 aa5.65□□□□□ -1.51
LIMCH1-207ENST00000508466 FOLR3P41439 243 aa5.65□□□□□ -1.51
LIMCH1-207ENST00000508466 CT83Q5H943 113 aa5.65□□□□□ -1.51
LIMCH1-207ENST00000508466 TTTY12Q9BZ98 90 aa5.65□□□□□ -1.51
LIMCH1-207ENST00000508466 CD7P09564 240 aa5.64□□□□□ -1.51
LIMCH1-207ENST00000508466 CFC1BP0CG36 223 aa5.64□□□□□ -1.51
LIMCH1-207ENST00000508466 CFC1P0CG37 223 aa5.64□□□□□ -1.51
LIMCH1-207ENST00000508466 DEFB1P60022 68 aa5.64□□□□□ -1.51
LIMCH1-207ENST00000508466 CSDC2Q9Y534 153 aaKnown RBP5.64□□□□□ -1.51
LIMCH1-207ENST00000508466 TRAV12-3A0A0B4J271 114 aa5.64□□□□□ -1.51
LIMCH1-207ENST00000508466 PATE3B3GLJ2 98 aa5.64□□□□□ -1.51
LIMCH1-207ENST00000508466 PRAC2D3DTV9 90 aa5.64□□□□□ -1.51
LIMCH1-207ENST00000508466 MRPS12O15235 138 aaKnown RBP5.64□□□□□ -1.51
LIMCH1-207ENST00000508466 CEACAM4O75871 244 aa5.64□□□□□ -1.51
LIMCH1-207ENST00000508466 LPAL2Q16609 132 aa5.64□□□□□ -1.51
LIMCH1-207ENST00000508466 ODF3Q96PU9 254 aa5.64□□□□□ -1.51
LIMCH1-207ENST00000508466 SCGB3A1Q96QR1 104 aa5.64□□□□□ -1.51
LIMCH1-207ENST00000508466 OTORQ9NRC9 128 aa5.64□□□□□ -1.51
LIMCH1-207ENST00000508466 LTBP2Q14767 1821 aa5.64□□□□□ -1.51
LIMCH1-207ENST00000508466 TRAV2A0A0B4J234 112 aa5.63□□□□□ -1.51
LIMCH1-207ENST00000508466 IQCF6A8MYZ5 107 aa5.63□□□□□ -1.51
LIMCH1-207ENST00000508466 CECR9P0C854 216 aa5.63□□□□□ -1.51
LIMCH1-207ENST00000508466 NDUFA11Q86Y39 141 aa5.63□□□□□ -1.51
LIMCH1-207ENST00000508466 FAM57AQ8TBR7 257 aa5.63□□□□□ -1.51
LIMCH1-207ENST00000508466 RASL10AQ92737 203 aa5.63□□□□□ -1.51
LIMCH1-207ENST00000508466 ZMAT4Q9H898 229 aa5.63□□□□□ -1.51
LIMCH1-207ENST00000508466 MRPS17Q9Y2R5 130 aaKnown RBP5.63□□□□□ -1.51
LIMCH1-207ENST00000508466 CFIP05156 583 aa5.63□□□□□ -1.51
LIMCH1-207ENST00000508466 RPL39LQ96EH5 51 aaKnown RBP5.63□□□□□ -1.51
LIMCH1-207ENST00000508466 NGBQ9NPG2 151 aa5.63□□□□□ -1.51
LIMCH1-207ENST00000508466 ZNF580Q9UK33 172 aa5.63□□□□□ -1.51
LIMCH1-207ENST00000508466 RIF1Q5UIP0 2472 aaKnown RBP5.63□□□□□ -1.51
LIMCH1-207ENST00000508466 TRGV11A0A075B6L2 103 aa5.63□□□□□ -1.51
LIMCH1-207ENST00000508466 TRBV19A0A075B6N1 114 aa5.63□□□□□ -1.51
LIMCH1-207ENST00000508466 PRSS2P07478 247 aa5.63□□□□□ -1.51
LIMCH1-207ENST00000508466 PLGLAQ15195 96 aa5.63□□□□□ -1.51
LIMCH1-207ENST00000508466 TMEM170BQ5T4T1 132 aa5.63□□□□□ -1.51
LIMCH1-207ENST00000508466 SIGLEC15Q6ZMC9 328 aa5.63□□□□□ -1.51
LIMCH1-207ENST00000508466 TMEM105Q8N8V8 129 aa5.63□□□□□ -1.51
LIMCH1-207ENST00000508466 PRR25Q96S07 402 aa5.63□□□□□ -1.51
LIMCH1-207ENST00000508466 OPRPNQ99935 248 aaPredicted RBP5.63□□□□□ -1.51
LIMCH1-207ENST00000508466 TRAV8-4A0A0B4J246 113 aa5.62□□□□□ -1.51
LIMCH1-207ENST00000508466 K7ESF4 209 aa5.62□□□□□ -1.51
LIMCH1-207ENST00000508466 M0R381 172 aa5.62□□□□□ -1.51
LIMCH1-207ENST00000508466 SRD5A1P18405 259 aa5.62□□□□□ -1.51
LIMCH1-207ENST00000508466 SUB1P53999 127 aaKnown RBP eCLIP5.62□□□□□ -1.51
LIMCH1-207ENST00000508466 ADIPOQQ15848 244 aa5.62□□□□□ -1.51
LIMCH1-207ENST00000508466 RAB1BQ9H0U4 201 aa5.62□□□□□ -1.51
LIMCH1-207ENST00000508466 ZNF71Q9NQZ8 489 aaPredicted RBP5.62□□□□□ -1.51
LIMCH1-207ENST00000508466 IGKV3D-15A0A087WSY6 115 aa5.62□□□□□ -1.51
LIMCH1-207ENST00000508466 FAM236AA0A1B0GUQ0 79 aa5.62□□□□□ -1.51
LIMCH1-207ENST00000508466 FAM236BA0A1B0GV22 79 aa5.62□□□□□ -1.51
LIMCH1-207ENST00000508466 KIR2DS2P43631 304 aa5.62□□□□□ -1.51
LIMCH1-207ENST00000508466 IL17RELQ6ZVW7 336 aa5.62□□□□□ -1.51
LIMCH1-207ENST00000508466 ZNF575Q86XF7 245 aa5.62□□□□□ -1.51
LIMCH1-207ENST00000508466 TRIOBPQ9H2D6 2365 aa5.62□□□□□ -1.51
LIMCH1-207ENST00000508466 TNRC6BQ9UPQ9 1833 aaKnown RBP5.62□□□□□ -1.51
LIMCH1-207ENST00000508466 TRGV5A0A0B4J1U4 118 aa5.61□□□□□ -1.51
LIMCH1-207ENST00000508466 A4D1N5 150 aa5.61□□□□□ -1.51
LIMCH1-207ENST00000508466 DNPH1O43598 174 aa5.61□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 76.9 ms