RNA–Protein interactions for RNA: ENST00000504120.3

PCDHA1-203, Transcript of protocadherin alpha 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA1, Length 5,263 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1-203ENST00000504120 IGHV2-70P01814 119 aa13.08□□□□□ -0.32
PCDHA1-203ENST00000504120 ZNF625Q96I27 306 aaPredicted RBP13.08□□□□□ -0.32
PCDHA1-203ENST00000504120 TMEM243Q9BU79 118 aa13.08□□□□□ -0.32
PCDHA1-203ENST00000504120 FAM120AOSQ5T036 256 aa13.08□□□□□ -0.32
PCDHA1-203ENST00000504120 OR11H6Q8NGC7 330 aa13.08□□□□□ -0.32
PCDHA1-203ENST00000504120 F5H768 121 aa13.08□□□□□ -0.32
PCDHA1-203ENST00000504120 NPYP01303 97 aa13.08□□□□□ -0.32
PCDHA1-203ENST00000504120 CFHR3Q02985 330 aa13.08□□□□□ -0.32
PCDHA1-203ENST00000504120 C20orf78Q9BR46 151 aa13.08□□□□□ -0.32
PCDHA1-203ENST00000504120 C22orf46C9J442 243 aa13.07□□□□□ -0.32
PCDHA1-203ENST00000504120 COX8AP10176 69 aa13.07□□□□□ -0.32
PCDHA1-203ENST00000504120 ZNRF2Q8NHG8 242 aa13.07□□□□□ -0.32
PCDHA1-203ENST00000504120 LYPD6BQ8NI32 183 aa13.07□□□□□ -0.32
PCDHA1-203ENST00000504120 USF3Q68DE3 2245 aa13.07□□□□□ -0.32
PCDHA1-203ENST00000504120 HEATR5AQ86XA9 2040 aa13.07□□□□□ -0.32
PCDHA1-203ENST00000504120 VWC2LB2RUY7 222 aa13.07□□□□□ -0.32
PCDHA1-203ENST00000504120 HLA-DRB4P13762 266 aa13.07□□□□□ -0.32
PCDHA1-203ENST00000504120 HLA-DRB4X5D2U9 266 aa13.07□□□□□ -0.32
PCDHA1-203ENST00000504120 ATP6V0BQ99437 205 aa13.07□□□□□ -0.32
PCDHA1-203ENST00000504120 CTSZQ9UBR2 303 aa13.07□□□□□ -0.32
PCDHA1-203ENST00000504120 CACNA1BQ00975 2339 aa13.07□□□□□ -0.32
PCDHA1-203ENST00000504120 IGFL2Q6UWQ7 119 aa13.06□□□□□ -0.32
PCDHA1-203ENST00000504120 SLX1AQ9BQ83 275 aa13.06□□□□□ -0.32
PCDHA1-203ENST00000504120 CACNA1HO95180 2353 aa13.06□□□□□ -0.32
PCDHA1-203ENST00000504120 GAGE7O76087 117 aa13.06□□□□□ -0.32
PCDHA1-203ENST00000504120 GAGE12FP0CL80 117 aa13.06□□□□□ -0.32
PCDHA1-203ENST00000504120 GAGE12GP0CL81 117 aa13.06□□□□□ -0.32
PCDHA1-203ENST00000504120 GAGE12IP0CL82 117 aa13.06□□□□□ -0.32
PCDHA1-203ENST00000504120 ZNF561-AS1K7EIQ3 104 aa13.06□□□□□ -0.32
PCDHA1-203ENST00000504120 HOXB4P17483 251 aaPredicted RBP13.06□□□□□ -0.32
PCDHA1-203ENST00000504120 YLPM1P49750 1951 aaKnown RBP13.06□□□□□ -0.32
PCDHA1-203ENST00000504120 CDK2AP2O75956 126 aa13.06□□□□□ -0.32
PCDHA1-203ENST00000504120 KRTAP27-1Q3LI81 207 aa13.06□□□□□ -0.32
PCDHA1-203ENST00000504120 GAGE2AQ6NT46 116 aa13.06□□□□□ -0.32
PCDHA1-203ENST00000504120 SNHG12Q9BXW3 62 aa13.06□□□□□ -0.32
PCDHA1-203ENST00000504120 MRPL53Q96EL3 112 aaKnown RBP13.05□□□□□ -0.32
PCDHA1-203ENST00000504120 ABCA1O95477 2261 aa13.05□□□□□ -0.32
PCDHA1-203ENST00000504120 C9orf118A6NHY6 69 aa13.05□□□□□ -0.32
PCDHA1-203ENST00000504120 F8VRH5 84 aa13.05□□□□□ -0.32
PCDHA1-203ENST00000504120 Q6ZSR3 168 aa13.05□□□□□ -0.32
PCDHA1-203ENST00000504120 IGLL1P15814 213 aa13.05□□□□□ -0.32
PCDHA1-203ENST00000504120 APOC4P55056 127 aa13.05□□□□□ -0.32
PCDHA1-203ENST00000504120 GTSF1LQ9H1H1 148 aa13.05□□□□□ -0.32
PCDHA1-203ENST00000504120 WNK2Q9Y3S1 2297 aa13.05□□□□□ -0.32
PCDHA1-203ENST00000504120 LHBP01229 141 aa13.05□□□□□ -0.32
PCDHA1-203ENST00000504120 MRPL35Q9NZE8 188 aaKnown RBP13.05□□□□□ -0.32
PCDHA1-203ENST00000504120 ABCA4P78363 2273 aa13.04□□□□□ -0.32
PCDHA1-203ENST00000504120 K7EN84 100 aa13.04□□□□□ -0.32
PCDHA1-203ENST00000504120 RBAKDNA6NC62 111 aa13.04□□□□□ -0.32
PCDHA1-203ENST00000504120 INAFM2P0DMQ5 153 aa13.04□□□□□ -0.32
PCDHA1-203ENST00000504120 NDUFA12Q9UI09 145 aa13.04□□□□□ -0.32
PCDHA1-203ENST00000504120 LENEPQ9Y5L5 61 aa13.04□□□□□ -0.32
PCDHA1-203ENST00000504120 WIPF2Q8TF74 440 aaPredicted RBP13.03□□□□□ -0.32
PCDHA1-203ENST00000504120 DOCK9Q9BZ29 2069 aa13.03□□□□□ -0.32
PCDHA1-203ENST00000504120 PLXNB3Q9ULL4 1909 aa13.03□□□□□ -0.32
PCDHA1-203ENST00000504120 TAL2Q16559 108 aa13.03□□□□□ -0.32
PCDHA1-203ENST00000504120 FOXI2Q6ZQN5 318 aa13.03□□□□□ -0.32
PCDHA1-203ENST00000504120 FGF23Q9GZV9 251 aaPredicted RBP13.02□□□□□ -0.32
PCDHA1-203ENST00000504120 IGHV3-38A0A0C4DH36 116 aa13.02□□□□□ -0.33
PCDHA1-203ENST00000504120 H3BMM0 161 aa13.02□□□□□ -0.33
PCDHA1-203ENST00000504120 SPINK8P0C7L1 97 aa13.02□□□□□ -0.33
PCDHA1-203ENST00000504120 PFN2P35080 140 aa13.02□□□□□ -0.33
PCDHA1-203ENST00000504120 UBE2WQ96B02 151 aa13.02□□□□□ -0.33
PCDHA1-203ENST00000504120 IGF2-ASQ6U949 168 aa13.02□□□□□ -0.33
PCDHA1-203ENST00000504120 C17orf77Q96MU5 243 aa13.02□□□□□ -0.33
PCDHA1-203ENST00000504120 ZNF48Q96MX3 618 aaPredicted RBP13.02□□□□□ -0.33
PCDHA1-203ENST00000504120 GAGE6Q13070 117 aa13.01□□□□□ -0.33
PCDHA1-203ENST00000504120 TCF15Q12870 199 aa13.01□□□□□ -0.33
PCDHA1-203ENST00000504120 SOCS3O14543 225 aa13.01□□□□□ -0.33
PCDHA1-203ENST00000504120 DYNAPQ8N1N2 210 aa13.01□□□□□ -0.33
PCDHA1-203ENST00000504120 PRSS33Q8NF86 280 aa13.01□□□□□ -0.33
PCDHA1-203ENST00000504120 AGPAT4-IT1Q9H0P7 198 aa13.01□□□□□ -0.33
PCDHA1-203ENST00000504120 CADP27708 2225 aa13.01□□□□□ -0.33
PCDHA1-203ENST00000504120 K7EMI3 77 aa13□□□□□ -0.33
PCDHA1-203ENST00000504120 HERVK_113P63121 156 aa13□□□□□ -0.33
PCDHA1-203ENST00000504120 ZNF493Q6ZR52 646 aa13□□□□□ -0.33
PCDHA1-203ENST00000504120 VPREB3Q9UKI3 123 aa13□□□□□ -0.33
PCDHA1-203ENST00000504120 DENND4CQ5VZ89 1909 aa13□□□□□ -0.33
PCDHA1-203ENST00000504120 J3QKU1 62 aa13□□□□□ -0.33
PCDHA1-203ENST00000504120 NDUFS7O75251 213 aa13□□□□□ -0.33
PCDHA1-203ENST00000504120 KLF5Q13887 457 aaPredicted RBP13□□□□□ -0.33
PCDHA1-203ENST00000504120 WT1P19544 449 aaPredicted RBP13□□□□□ -0.33
PCDHA1-203ENST00000504120 LURAP1LQ8IV03 231 aa13□□□□□ -0.33
PCDHA1-203ENST00000504120 SIVA1O15304 175 aa12.99□□□□□ -0.33
PCDHA1-203ENST00000504120 NPBQ8NG41 125 aa12.99□□□□□ -0.33
PCDHA1-203ENST00000504120 NBASA2RRP1 2371 aa12.99□□□□□ -0.33
PCDHA1-203ENST00000504120 CENPVL3A0A0U1RRI6 287 aa12.99□□□□□ -0.33
PCDHA1-203ENST00000504120 SPTAN1Q13813 2472 aaKnown RBP12.99□□□□□ -0.33
PCDHA1-203ENST00000504120 EGR2P11161 476 aaPredicted RBP12.99□□□□□ -0.33
PCDHA1-203ENST00000504120 F8W1H4 67 aa12.98□□□□□ -0.33
PCDHA1-203ENST00000504120 J3QQQ9 107 aa12.98□□□□□ -0.33
PCDHA1-203ENST00000504120 DEFB112Q30KQ8 113 aa12.98□□□□□ -0.33
PCDHA1-203ENST00000504120 PRO1854Q9UHT4 67 aa12.98□□□□□ -0.33
PCDHA1-203ENST00000504120 PLXND1Q9Y4D7 1925 aa12.98□□□□□ -0.33
PCDHA1-203ENST00000504120 DOCK7Q96N67 2140 aa12.98□□□□□ -0.33
PCDHA1-203ENST00000504120 HLA-DMBP28068 263 aa12.98□□□□□ -0.33
PCDHA1-203ENST00000504120 BVES-AS1Q5T3Y7 98 aa12.98□□□□□ -0.33
PCDHA1-203ENST00000504120 CEND1Q8N111 149 aa12.98□□□□□ -0.33
PCDHA1-203ENST00000504120 ASPHD1Q5U4P2 390 aa12.98□□□□□ -0.33
PCDHA1-203ENST00000504120 PPDPFLQ8WWR9 84 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms