RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 DEFB107AQ8IZN7 70 aa0.56□□□□□ -2.32
VPS50-219ENST00000495039 LRRC18Q8N456 261 aa0.56□□□□□ -2.32
VPS50-219ENST00000495039 TSTD1Q8NFU3 115 aa0.56□□□□□ -2.32
VPS50-219ENST00000495039 OR4B1Q8NGF8 309 aa0.56□□□□□ -2.32
VPS50-219ENST00000495039 POP5Q969H6 163 aaKnown RBP0.56□□□□□ -2.32
VPS50-219ENST00000495039 BORCS5Q969J3 196 aa0.56□□□□□ -2.32
VPS50-219ENST00000495039 MUCL1Q96DR8 90 aa0.56□□□□□ -2.32
VPS50-219ENST00000495039 PPP3R2Q96LZ3 170 aa0.56□□□□□ -2.32
VPS50-219ENST00000495039 S100A13Q99584 98 aa0.56□□□□□ -2.32
VPS50-219ENST00000495039 SAR1AQ9NR31 198 aa0.56□□□□□ -2.32
VPS50-219ENST00000495039 BATF3Q9NR55 127 aa0.56□□□□□ -2.32
VPS50-219ENST00000495039 CCDC167Q9P0B6 97 aa0.56□□□□□ -2.32
VPS50-219ENST00000495039 NAT8BQ9UHF3 227 aa0.56□□□□□ -2.32
VPS50-219ENST00000495039 TPRKBQ9Y3C4 175 aa0.56□□□□□ -2.32
VPS50-219ENST00000495039 AP4S1Q9Y587 144 aa0.56□□□□□ -2.32
VPS50-219ENST00000495039 SYNMO15061 1565 aa0.56□□□□□ -2.32
VPS50-219ENST00000495039 ADAMTS12P58397 1594 aa0.56□□□□□ -2.32
VPS50-219ENST00000495039 ARHGEF5Q12774 1597 aa0.56□□□□□ -2.32
VPS50-219ENST00000495039 RNF17Q9BXT8 1623 aaKnown RBP0.56□□□□□ -2.32
VPS50-219ENST00000495039 BIVM-ERCC5R4GMW8 1640 aa0.56□□□□□ -2.32
VPS50-219ENST00000495039 EML5Q05BV3 1969 aa0.56□□□□□ -2.32
VPS50-219ENST00000495039 BCL9LQ86UU0 1499 aa0.55□□□□□ -2.32
VPS50-219ENST00000495039 DLC1Q96QB1 1528 aa0.55□□□□□ -2.32
VPS50-219ENST00000495039 GLI2P10070 1586 aa0.55□□□□□ -2.32
VPS50-219ENST00000495039 KDM5CP41229 1560 aa0.55□□□□□ -2.32
VPS50-219ENST00000495039 ERCC6L2Q5T890 1561 aa0.55□□□□□ -2.32
VPS50-219ENST00000495039 CDC42BPGQ6DT37 1551 aa0.55□□□□□ -2.32
VPS50-219ENST00000495039 TRAV27A0A087WT01 109 aa0.55□□□□□ -2.32
VPS50-219ENST00000495039 A0A087WXM4 84 aa0.55□□□□□ -2.32
VPS50-219ENST00000495039 A0A096LPI6 279 aa0.55□□□□□ -2.32
VPS50-219ENST00000495039 TRAV10A0A0B4J240 114 aa0.55□□□□□ -2.32
VPS50-219ENST00000495039 PNMA8CA0A1B0GUJ8 204 aa0.55□□□□□ -2.32
VPS50-219ENST00000495039 LOC100130705A0A1B0GUX0 176 aa0.55□□□□□ -2.32
VPS50-219ENST00000495039 LOC285095A0A1B0GVY8 99 aa0.55□□□□□ -2.32
VPS50-219ENST00000495039 TRDV1A0A1B0GX56 115 aa0.55□□□□□ -2.32
VPS50-219ENST00000495039 ODAMA1E959 279 aa0.55□□□□□ -2.32
VPS50-219ENST00000495039 EFCAB10A6NFE3 127 aa0.55□□□□□ -2.32
VPS50-219ENST00000495039 BBIP1A8MTZ0 92 aa0.55□□□□□ -2.32
VPS50-219ENST00000495039 FAM25AB3EWG3 89 aa0.55□□□□□ -2.32
VPS50-219ENST00000495039 FAM25CB3EWG5 89 aa0.55□□□□□ -2.32
VPS50-219ENST00000495039 FAM25GB3EWG6 89 aa0.55□□□□□ -2.32
VPS50-219ENST00000495039 E7EUB6 86 aa0.55□□□□□ -2.32
VPS50-219ENST00000495039 CCL22O00626 93 aa0.55□□□□□ -2.32
VPS50-219ENST00000495039 EDF1O60869 148 aaKnown RBP0.55□□□□□ -2.32
VPS50-219ENST00000495039 ERC2-IT1O76042 136 aa0.55□□□□□ -2.32
VPS50-219ENST00000495039 HMGN1P05114 100 aa0.55□□□□□ -2.32
VPS50-219ENST00000495039 TSPAN19P0C672 248 aa0.55□□□□□ -2.32
VPS50-219ENST00000495039 TPT1P13693 172 aaKnown RBP0.55□□□□□ -2.32
VPS50-219ENST00000495039 S100A11P31949 105 aa0.55□□□□□ -2.32
VPS50-219ENST00000495039 SPINT3P49223 89 aa0.55□□□□□ -2.32
VPS50-219ENST00000495039 SRP9P49458 86 aaKnown RBP0.55□□□□□ -2.32
VPS50-219ENST00000495039 INSL3P51460 131 aa0.55□□□□□ -2.32
VPS50-219ENST00000495039 DSCR4P56555 118 aaPredicted RBP0.55□□□□□ -2.32
VPS50-219ENST00000495039 DNAJB13P59910 316 aa0.55□□□□□ -2.32
VPS50-219ENST00000495039 EMX2Q04743 252 aa0.55□□□□□ -2.32
VPS50-219ENST00000495039 MSMO1Q15800 293 aa0.55□□□□□ -2.32
VPS50-219ENST00000495039 ZCCHC23Q6ZST2 131 aa0.55□□□□□ -2.32
VPS50-219ENST00000495039 ARPINQ7Z6K5 226 aa0.55□□□□□ -2.32
VPS50-219ENST00000495039 PRR15Q8IV56 129 aa0.55□□□□□ -2.32
VPS50-219ENST00000495039 FAM216BQ8N7L0 139 aa0.55□□□□□ -2.32
VPS50-219ENST00000495039 OR5H6Q8NGV6 325 aa0.55□□□□□ -2.32
VPS50-219ENST00000495039 THEM6Q8WUY1 208 aa0.55□□□□□ -2.32
VPS50-219ENST00000495039 LCN9Q8WX39 176 aa0.55□□□□□ -2.32
VPS50-219ENST00000495039 RAB37Q96AX2 223 aa0.55□□□□□ -2.32
VPS50-219ENST00000495039 HYLS1Q96M11 299 aa0.55□□□□□ -2.32
VPS50-219ENST00000495039 TSC22D3Q99576 134 aa0.55□□□□□ -2.32
VPS50-219ENST00000495039 RERGLQ9H628 205 aa0.55□□□□□ -2.32
VPS50-219ENST00000495039 LRTM1Q9HBL6 345 aa0.55□□□□□ -2.32
VPS50-219ENST00000495039 C19orf12Q9NSK7 152 aa0.55□□□□□ -2.32
VPS50-219ENST00000495039 CALML5Q9NZT1 146 aa0.55□□□□□ -2.32
VPS50-219ENST00000495039 ORMDL1Q9P0S3 153 aa0.55□□□□□ -2.32
VPS50-219ENST00000495039 RNF11Q9Y3C5 154 aa0.55□□□□□ -2.32
VPS50-219ENST00000495039 ASB4Q9Y574 426 aa0.55□□□□□ -2.32
VPS50-219ENST00000495039 RIMBP3CA6NJZ7 1639 aa0.55□□□□□ -2.32
VPS50-219ENST00000495039 RIMBP3BA6NNM3 1639 aa0.55□□□□□ -2.32
VPS50-219ENST00000495039 TARBP1Q13395 1621 aaKnown RBP0.55□□□□□ -2.32
VPS50-219ENST00000495039 RIMBP3Q9UFD9 1639 aa0.55□□□□□ -2.32
VPS50-219ENST00000495039 PLXNC1O60486 1568 aa0.54□□□□□ -2.32
VPS50-219ENST00000495039 TTC37Q6PGP7 1564 aa0.54□□□□□ -2.32
VPS50-219ENST00000495039 NRKQ7Z2Y5 1582 aa0.54□□□□□ -2.32
VPS50-219ENST00000495039 MAST1Q9Y2H9 1570 aa0.54□□□□□ -2.32
VPS50-219ENST00000495039 CEP170BQ9Y4F5 1589 aaPredicted RBP0.54□□□□□ -2.32
VPS50-219ENST00000495039 SETBP1Q9Y6X0 1596 aa0.54□□□□□ -2.32
VPS50-219ENST00000495039 SCN10AQ9Y5Y9 1956 aa0.54□□□□□ -2.32
VPS50-219ENST00000495039 KDM6BO15054 1643 aa0.54□□□□□ -2.32
VPS50-219ENST00000495039 EIF2AK4Q9P2K8 1649 aaKnown RBP0.54□□□□□ -2.32
VPS50-219ENST00000495039 IGLV3-32A0A0A0MS00 114 aa0.54□□□□□ -2.32
VPS50-219ENST00000495039 TRAV16A0A0A6YYK6 109 aaPredicted RBP0.54□□□□□ -2.32
VPS50-219ENST00000495039 TRAV13-1A0A0B4J241 112 aa0.54□□□□□ -2.32
VPS50-219ENST00000495039 IGHV1-58A0A0C4DH39 117 aa0.54□□□□□ -2.32
VPS50-219ENST00000495039 CXorf51AA0A1B0GTR3 108 aa0.54□□□□□ -2.32
VPS50-219ENST00000495039 hDV103S1A0JD37 113 aa0.54□□□□□ -2.32
VPS50-219ENST00000495039 FAM92AA1XBS5 289 aa0.54□□□□□ -2.32
VPS50-219ENST00000495039 PRORSD1PA6NEY8 169 aa0.54□□□□□ -2.32
VPS50-219ENST00000495039 ZNF670-ZNF695F2Z2N8 137 aa0.54□□□□□ -2.32
VPS50-219ENST00000495039 C5orf67F2Z3F1 127 aa0.54□□□□□ -2.32
VPS50-219ENST00000495039 F8W1H4 67 aa0.54□□□□□ -2.32
VPS50-219ENST00000495039 H3BMG7 143 aa0.54□□□□□ -2.32
VPS50-219ENST00000495039 H3BRM9 83 aa0.54□□□□□ -2.32
VPS50-219ENST00000495039 GABARAPH6UMI1 98 aa0.54□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms