RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 TMED6Q8WW62 240 aa11.33□□□□□ -0.6
LIME1-209ENST00000494776 MAP1LC3BQ9GZQ8 125 aa11.33□□□□□ -0.6
LIME1-209ENST00000494776 TMPRSS5Q9H3S3 457 aa11.33□□□□□ -0.6
LIME1-209ENST00000494776 APLNQ9ULZ1 77 aa11.33□□□□□ -0.6
LIME1-209ENST00000494776 A0A1W2PRE2 83 aa11.32□□□□□ -0.6
LIME1-209ENST00000494776 UMAD1C9J7I0 102 aa11.32□□□□□ -0.6
LIME1-209ENST00000494776 TPT1P13693 172 aaKnown RBP11.32□□□□□ -0.6
LIME1-209ENST00000494776 UBE2G2P60604 165 aa11.32□□□□□ -0.6
LIME1-209ENST00000494776 AKAP14Q86UN6 197 aa11.32□□□□□ -0.6
LIME1-209ENST00000494776 ZNF680Q8NEM1 530 aa11.32□□□□□ -0.6
LIME1-209ENST00000494776 NDFIP1Q9BT67 221 aa11.32□□□□□ -0.6
LIME1-209ENST00000494776 NDUFAF3Q9BU61 184 aa11.32□□□□□ -0.6
LIME1-209ENST00000494776 IGHV1OR15-1A0A075B7D0 117 aa11.31□□□□□ -0.6
LIME1-209ENST00000494776 TRAV8-1A0A0A6YYK1 113 aa11.31□□□□□ -0.6
LIME1-209ENST00000494776 IFNA7P01567 189 aa11.31□□□□□ -0.6
LIME1-209ENST00000494776 TCRAP04437 139 aa11.31□□□□□ -0.6
LIME1-209ENST00000494776 FAM213BQ8TBF2 198 aa11.31□□□□□ -0.6
LIME1-209ENST00000494776 SGK494Q96LW2 274 aa11.31□□□□□ -0.6
LIME1-209ENST00000494776 LINC00467Q9BRT7 94 aa11.31□□□□□ -0.6
LIME1-209ENST00000494776 TREM1Q9NP99 234 aa11.31□□□□□ -0.6
LIME1-209ENST00000494776 EPDR1Q9UM22 224 aa11.31□□□□□ -0.6
LIME1-209ENST00000494776 GGTLC3B5MD39 225 aa11.3□□□□□ -0.6
LIME1-209ENST00000494776 C1QBP02746 253 aa11.3□□□□□ -0.6
LIME1-209ENST00000494776 FHITP49789 147 aa11.3□□□□□ -0.6
LIME1-209ENST00000494776 ANXA2RQ3ZCQ2 193 aa11.3□□□□□ -0.6
LIME1-209ENST00000494776 LGALS9CQ6DKI2 356 aa11.3□□□□□ -0.6
LIME1-209ENST00000494776 Q6ZQT7 251 aa11.3□□□□□ -0.6
LIME1-209ENST00000494776 FAM210BQ96KR6 192 aa11.3□□□□□ -0.6
LIME1-209ENST00000494776 NKX6-2Q9C056 277 aaPredicted RBP11.3□□□□□ -0.6
LIME1-209ENST00000494776 GSN-AS1Q9NRJ2 163 aa11.3□□□□□ -0.6
LIME1-209ENST00000494776 DNAH1Q9P2D7 4330 aa11.29□□□□□ -0.6
LIME1-209ENST00000494776 GAGE12BA1L429 117 aa11.29□□□□□ -0.6
LIME1-209ENST00000494776 F5H768 121 aa11.29□□□□□ -0.6
LIME1-209ENST00000494776 GAGE7O76087 117 aa11.29□□□□□ -0.6
LIME1-209ENST00000494776 ATP5G1P05496 136 aa11.29□□□□□ -0.6
LIME1-209ENST00000494776 GAGE12FP0CL80 117 aa11.29□□□□□ -0.6
LIME1-209ENST00000494776 GAGE12GP0CL81 117 aa11.29□□□□□ -0.6
LIME1-209ENST00000494776 GAGE12IP0CL82 117 aa11.29□□□□□ -0.6
LIME1-209ENST00000494776 ATP5G3P48201 142 aa11.29□□□□□ -0.6
LIME1-209ENST00000494776 LGALSLQ3ZCW2 172 aaPredicted RBP11.29□□□□□ -0.6
LIME1-209ENST00000494776 MUC21Q5SSG8 566 aa11.29□□□□□ -0.6
LIME1-209ENST00000494776 FAM159AQ6UWV7 190 aa11.29□□□□□ -0.6
LIME1-209ENST00000494776 CYB561D1Q8N8Q1 229 aa11.29□□□□□ -0.6
LIME1-209ENST00000494776 SFT2D1Q8WV19 159 aa11.29□□□□□ -0.6
LIME1-209ENST00000494776 ATG101Q9BSB4 218 aa11.29□□□□□ -0.6
LIME1-209ENST00000494776 F6UZH7 168 aa11.28□□□□□ -0.6
LIME1-209ENST00000494776 DAZ2Q13117 558 aaKnown RBP11.28□□□□□ -0.6
LIME1-209ENST00000494776 Q6AWC8 147 aa11.28□□□□□ -0.6
LIME1-209ENST00000494776 EIF5AL1Q6IS14 154 aaKnown RBP11.28□□□□□ -0.6
LIME1-209ENST00000494776 DPPA3Q6W0C5 159 aa11.28□□□□□ -0.6
LIME1-209ENST00000494776 NAGKQ9UJ70 344 aa11.28□□□□□ -0.6
LIME1-209ENST00000494776 TP53TG3Q9ULZ0 132 aa11.28□□□□□ -0.6
LIME1-209ENST00000494776 PSG8Q9UQ74 426 aa11.28□□□□□ -0.6
LIME1-209ENST00000494776 A0A1B0GV50 99 aa11.27□□□□□ -0.61
LIME1-209ENST00000494776 FBLL1A6NHQ2 334 aaKnown RBP11.27□□□□□ -0.61
LIME1-209ENST00000494776 FAM74A7A6NL05 159 aa11.27□□□□□ -0.61
LIME1-209ENST00000494776 PPT1P50897 306 aa11.27□□□□□ -0.61
LIME1-209ENST00000494776 FLI1Q01543 452 aaPredicted RBP11.27□□□□□ -0.61
LIME1-209ENST00000494776 CST9LP1Q5W188 147 aa11.27□□□□□ -0.61
LIME1-209ENST00000494776 TMEM88Q6PEY1 159 aa11.27□□□□□ -0.61
LIME1-209ENST00000494776 PRNTQ86SH4 94 aa11.27□□□□□ -0.61
LIME1-209ENST00000494776 TVP23CQ96ET8 276 aa11.27□□□□□ -0.61
LIME1-209ENST00000494776 PLECQ15149 4684 aaKnown RBP11.26□□□□□ -0.61
LIME1-209ENST00000494776 TRGV1A0A0A0MS02 117 aa11.26□□□□□ -0.61
LIME1-209ENST00000494776 TRAV21A0A0B4J279 112 aa11.26□□□□□ -0.61
LIME1-209ENST00000494776 H2AFB1P0C5Y9 115 aa11.26□□□□□ -0.61
LIME1-209ENST00000494776 TCL1AP56279 114 aa11.26□□□□□ -0.61
LIME1-209ENST00000494776 ZNF415Q09FC8 603 aa11.26□□□□□ -0.61
LIME1-209ENST00000494776 ZFP69Q49AA0 526 aa11.26□□□□□ -0.61
LIME1-209ENST00000494776 IBA57Q5T440 356 aaKnown RBP11.26□□□□□ -0.61
LIME1-209ENST00000494776 TMEM75Q8N9X5 138 aa11.26□□□□□ -0.61
LIME1-209ENST00000494776 C11orf72Q8NBR9 251 aa11.26□□□□□ -0.61
LIME1-209ENST00000494776 KLF12Q9Y4X4 402 aa11.26□□□□□ -0.61
LIME1-209ENST00000494776 TRGV11A0A075B6L2 103 aa11.25□□□□□ -0.61
LIME1-209ENST00000494776 TRGV2A0A075B6R0 118 aa11.25□□□□□ -0.61
LIME1-209ENST00000494776 TRAV34A0A0B4J273 112 aa11.25□□□□□ -0.61
LIME1-209ENST00000494776 PEX7O00628 323 aa11.25□□□□□ -0.61
LIME1-209ENST00000494776 TMEM183BQ1AE95 376 aa11.25□□□□□ -0.61
LIME1-209ENST00000494776 SAPCD1Q5SSQ6 148 aa11.25□□□□□ -0.61
LIME1-209ENST00000494776 Q6ZTI0 123 aa11.25□□□□□ -0.61
LIME1-209ENST00000494776 TMEM183AQ8IXX5 376 aa11.25□□□□□ -0.61
LIME1-209ENST00000494776 MBD3L1Q8WWY6 194 aa11.25□□□□□ -0.61
LIME1-209ENST00000494776 HIST1H2BAQ96A08 127 aa11.25□□□□□ -0.61
LIME1-209ENST00000494776 C8orf49Q96NF6 230 aa11.25□□□□□ -0.61
LIME1-209ENST00000494776 ALMS1Q8TCU4 4167 aa11.25□□□□□ -0.61
LIME1-209ENST00000494776 P0DMU3 169 aa11.24□□□□□ -0.61
LIME1-209ENST00000494776 FAM231AP0DMU4 169 aa11.24□□□□□ -0.61
LIME1-209ENST00000494776 FAM231CP0DMU5 169 aa11.24□□□□□ -0.61
LIME1-209ENST00000494776 OR5I1Q13606 314 aa11.24□□□□□ -0.61
LIME1-209ENST00000494776 SMUG1Q53HV7 270 aa11.24□□□□□ -0.61
LIME1-209ENST00000494776 LINC00612Q8N6U2 182 aa11.24□□□□□ -0.61
LIME1-209ENST00000494776 LINC00479Q96M42 142 aa11.24□□□□□ -0.61
LIME1-209ENST00000494776 HYDINQ4G0P3 5121 aa11.23□□□□□ -0.61
LIME1-209ENST00000494776 PAGE4O60829 102 aa11.23□□□□□ -0.61
LIME1-209ENST00000494776 GCGP01275 180 aa11.23□□□□□ -0.61
LIME1-209ENST00000494776 IGLV2-11P01706 119 aa11.23□□□□□ -0.61
LIME1-209ENST00000494776 RAB5CP51148 216 aa11.23□□□□□ -0.61
LIME1-209ENST00000494776 SLC51BQ86UW2 128 aa11.23□□□□□ -0.61
LIME1-209ENST00000494776 C15orf53Q8NAA6 179 aa11.23□□□□□ -0.61
LIME1-209ENST00000494776 ARL2-SNX15V9GYD0 113 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms