RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 SNRPFP62306 86 aaKnown RBP3.03□□□□□ -1.92
BRCA1-220ENST00000492859 Q0VFX4 171 aa3.03□□□□□ -1.92
BRCA1-220ENST00000492859 FAM216BQ8N7L0 139 aa3.03□□□□□ -1.92
BRCA1-220ENST00000492859 B9D2Q9BPU9 175 aa3.03□□□□□ -1.92
BRCA1-220ENST00000492859 TTTY13Q9BZ97 58 aa3.03□□□□□ -1.92
BRCA1-220ENST00000492859 IL25Q9H293 177 aa3.03□□□□□ -1.92
BRCA1-220ENST00000492859 ZNF71Q9NQZ8 489 aaPredicted RBP3.03□□□□□ -1.92
BRCA1-220ENST00000492859 ZNF580Q9UK33 172 aa3.03□□□□□ -1.92
BRCA1-220ENST00000492859 ARID1AO14497 2285 aa3.03□□□□□ -1.93
BRCA1-220ENST00000492859 C5P01031 1676 aa3.03□□□□□ -1.93
BRCA1-220ENST00000492859 AGLP35573 1532 aa3.03□□□□□ -1.93
BRCA1-220ENST00000492859 DOCK11Q5JSL3 2073 aa3.02□□□□□ -1.93
BRCA1-220ENST00000492859 DOCK9Q9BZ29 2069 aa3.02□□□□□ -1.93
BRCA1-220ENST00000492859 PTPRMP28827 1452 aa3.02□□□□□ -1.93
BRCA1-220ENST00000492859 TET2Q6N021 2002 aaPredicted RBP3.02□□□□□ -1.93
BRCA1-220ENST00000492859 THADAQ6YHU6 1953 aa3.02□□□□□ -1.93
BRCA1-220ENST00000492859 A0A1B0GW54 56 aa3.02□□□□□ -1.93
BRCA1-220ENST00000492859 PINLYPA6NC86 204 aa3.02□□□□□ -1.93
BRCA1-220ENST00000492859 F2Z2F3 143 aa3.02□□□□□ -1.93
BRCA1-220ENST00000492859 KRTAP4-16G5E9R7 235 aaPredicted RBP3.02□□□□□ -1.93
BRCA1-220ENST00000492859 C3orf84H3BNL1 204 aa3.02□□□□□ -1.93
BRCA1-220ENST00000492859 RNASE2P10153 161 aaKnown RBP3.02□□□□□ -1.93
BRCA1-220ENST00000492859 LMO2P25791 158 aa3.02□□□□□ -1.93
BRCA1-220ENST00000492859 DSCR4P56555 118 aaPredicted RBP3.02□□□□□ -1.93
BRCA1-220ENST00000492859 DSCR9P59020 149 aa3.02□□□□□ -1.93
BRCA1-220ENST00000492859 NANOS2P60321 138 aaKnown RBP3.02□□□□□ -1.93
BRCA1-220ENST00000492859 KRTAP27-1Q3LI81 207 aa3.02□□□□□ -1.93
BRCA1-220ENST00000492859 MIR17HGQ75NE6 70 aa3.02□□□□□ -1.93
BRCA1-220ENST00000492859 Q8N7P7 452 aa3.02□□□□□ -1.93
BRCA1-220ENST00000492859 CCL4L1Q8NHW4 92 aa3.02□□□□□ -1.93
BRCA1-220ENST00000492859 CLEC7AQ9BXN2 247 aa3.02□□□□□ -1.93
BRCA1-220ENST00000492859 HILPDAQ9Y5L2 63 aa3.02□□□□□ -1.93
BRCA1-220ENST00000492859 GREB1Q4ZG55 1949 aa3.02□□□□□ -1.93
BRCA1-220ENST00000492859 PLXNA2O75051 1894 aa3.02□□□□□ -1.93
BRCA1-220ENST00000492859 MAST1Q9Y2H9 1570 aa3.01□□□□□ -1.93
BRCA1-220ENST00000492859 COL14A1Q05707 1796 aaKnown RBP3.01□□□□□ -1.93
BRCA1-220ENST00000492859 IGKV1D-17A0A075B6S4 117 aa3.01□□□□□ -1.93
BRCA1-220ENST00000492859 IGHV3OR15-7A0A075B7D8 119 aa3.01□□□□□ -1.93
BRCA1-220ENST00000492859 IGKV3D-20A0A0C4DH25 116 aa3.01□□□□□ -1.93
BRCA1-220ENST00000492859 CKS2P33552 79 aa3.01□□□□□ -1.93
BRCA1-220ENST00000492859 CRIP2P52943 208 aaPredicted RBP3.01□□□□□ -1.93
BRCA1-220ENST00000492859 GNB1P62873 340 aa3.01□□□□□ -1.93
BRCA1-220ENST00000492859 DYNLT1P63172 113 aa3.01□□□□□ -1.93
BRCA1-220ENST00000492859 FHL2Q14192 279 aa3.01□□□□□ -1.93
BRCA1-220ENST00000492859 RHOHQ15669 191 aa3.01□□□□□ -1.93
BRCA1-220ENST00000492859 S100A7L2Q5SY68 101 aa3.01□□□□□ -1.93
BRCA1-220ENST00000492859 CHCHD2P9Q5T1J5 151 aaPredicted RBP3.01□□□□□ -1.93
BRCA1-220ENST00000492859 FAM72BQ86X60 149 aa3.01□□□□□ -1.93
BRCA1-220ENST00000492859 FGF23Q9GZV9 251 aaPredicted RBP3.01□□□□□ -1.93
BRCA1-220ENST00000492859 R3HDMLQ9H3Y0 253 aa3.01□□□□□ -1.93
BRCA1-220ENST00000492859 TRAPPC1Q9Y5R8 145 aa3.01□□□□□ -1.93
BRCA1-220ENST00000492859 PLXNA3P51805 1871 aa3.01□□□□□ -1.93
BRCA1-220ENST00000492859 TOP2BQ02880 1626 aa3□□□□□ -1.93
BRCA1-220ENST00000492859 CICQ96RK0 1608 aaPredicted RBP3□□□□□ -1.93
BRCA1-220ENST00000492859 TJP1Q07157 1748 aa3□□□□□ -1.93
BRCA1-220ENST00000492859 IGHV4-4A0A075B6R2 117 aa3□□□□□ -1.93
BRCA1-220ENST00000492859 TRBV6-7A0A0A0MS04 114 aa3□□□□□ -1.93
BRCA1-220ENST00000492859 J3QLW9 94 aa3□□□□□ -1.93
BRCA1-220ENST00000492859 HCRTO43612 131 aa3□□□□□ -1.93
BRCA1-220ENST00000492859 APCSP02743 223 aa3□□□□□ -1.93
BRCA1-220ENST00000492859 PIRTP0C851 137 aa3□□□□□ -1.93
BRCA1-220ENST00000492859 CXCL8P10145 99 aa3□□□□□ -1.93
BRCA1-220ENST00000492859 PLA2G5P39877 138 aa3□□□□□ -1.93
BRCA1-220ENST00000492859 PRR4Q16378 134 aa3□□□□□ -1.93
BRCA1-220ENST00000492859 Q1T7F1 81 aa3□□□□□ -1.93
BRCA1-220ENST00000492859 C2orf83Q53S99 150 aa3□□□□□ -1.93
BRCA1-220ENST00000492859 LYPD5Q6UWN5 251 aa3□□□□□ -1.93
BRCA1-220ENST00000492859 TOMM5Q8N4H5 51 aa3□□□□□ -1.93
BRCA1-220ENST00000492859 RMI2Q96E14 147 aa3□□□□□ -1.93
BRCA1-220ENST00000492859 PLA2G12AQ9BZM1 189 aa3□□□□□ -1.93
BRCA1-220ENST00000492859 DPM3Q9P2X0 92 aa3□□□□□ -1.93
BRCA1-220ENST00000492859 PCNX2A6NKB5 2137 aa3□□□□□ -1.93
BRCA1-220ENST00000492859 IQGAP1P46940 1657 aa3□□□□□ -1.93
BRCA1-220ENST00000492859 PHRF1Q9P1Y6 1649 aaKnown RBP3□□□□□ -1.93
BRCA1-220ENST00000492859 ZNF236Q9UL36 1845 aa3□□□□□ -1.93
BRCA1-220ENST00000492859 IGLV3-12A0A075B6K2 115 aa3□□□□□ -1.93
BRCA1-220ENST00000492859 IGHV3-74A0A0B4J1X5 117 aa3□□□□□ -1.93
BRCA1-220ENST00000492859 CRYM-AS1A6NIL9 109 aa3□□□□□ -1.93
BRCA1-220ENST00000492859 SAA1P0DJI8 122 aaPredicted RBP3□□□□□ -1.93
BRCA1-220ENST00000492859 CGB3P0DN86 165 aa3□□□□□ -1.93
BRCA1-220ENST00000492859 CGB7P0DN87 165 aa3□□□□□ -1.93
BRCA1-220ENST00000492859 PEBP1P30086 187 aaKnown RBP3□□□□□ -1.93
BRCA1-220ENST00000492859 FHL1Q13642 323 aa3□□□□□ -1.93
BRCA1-220ENST00000492859 TMEM170BQ5T4T1 132 aa3□□□□□ -1.93
BRCA1-220ENST00000492859 BAGE3Q86Y29 109 aa3□□□□□ -1.93
BRCA1-220ENST00000492859 BAGE2Q86Y30 109 aa3□□□□□ -1.93
BRCA1-220ENST00000492859 LINC00476Q8WZB0 136 aa3□□□□□ -1.93
BRCA1-220ENST00000492859 C8orf49Q96NF6 230 aa3□□□□□ -1.93
BRCA1-220ENST00000492859 SLC50A1Q9BRV3 221 aa3□□□□□ -1.93
BRCA1-220ENST00000492859 OCR1Q9BZK8 76 aa3□□□□□ -1.93
BRCA1-220ENST00000492859 LOC285556D6RIA3 1793 aa2.99□□□□□ -1.93
BRCA1-220ENST00000492859 GON4LQ3T8J9 2241 aa2.99□□□□□ -1.93
BRCA1-220ENST00000492859 DLG5Q8TDM6 1919 aa2.99□□□□□ -1.93
BRCA1-220ENST00000492859 WDR90Q96KV7 1748 aa2.99□□□□□ -1.93
BRCA1-220ENST00000492859 FMN2Q9NZ56 1722 aa2.99□□□□□ -1.93
BRCA1-220ENST00000492859 MGAMO43451 1857 aa2.99□□□□□ -1.93
BRCA1-220ENST00000492859 LAMB2P55268 1798 aa2.99□□□□□ -1.93
BRCA1-220ENST00000492859 IGHV3OR16-10A0A075B7F0 116 aa2.99□□□□□ -1.93
BRCA1-220ENST00000492859 IGHV3-72A0A0B4J1Y9 119 aa2.99□□□□□ -1.93
BRCA1-220ENST00000492859 IGHV1OR15-9A0A0B4J2B8 117 aa2.99□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms