RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 ZNF727A8MUV8 499 aa10.16□□□□□ -0.78
C9orf3-221ENST00000489562 GIG44P09565 113 aaPredicted RBP10.16□□□□□ -0.78
C9orf3-221ENST00000489562 FXYD7P58549 80 aa10.16□□□□□ -0.78
C9orf3-221ENST00000489562 DEFA6Q01524 100 aa10.16□□□□□ -0.78
C9orf3-221ENST00000489562 Q6ZWC4 215 aa10.16□□□□□ -0.78
C9orf3-221ENST00000489562 TMEM256Q8N2U0 113 aa10.16□□□□□ -0.78
C9orf3-221ENST00000489562 BIN3Q9NQY0 253 aa10.16□□□□□ -0.78
C9orf3-221ENST00000489562 XCL2Q9UBD3 114 aa10.16□□□□□ -0.78
C9orf3-221ENST00000489562 LY96Q9Y6Y9 160 aa10.16□□□□□ -0.78
C9orf3-221ENST00000489562 TRBV20OR9-2A0A075B6H5 130 aa10.15□□□□□ -0.78
C9orf3-221ENST00000489562 CRXO43186 299 aaPredicted RBP10.15□□□□□ -0.78
C9orf3-221ENST00000489562 SFTA3P0C7M3 94 aa10.15□□□□□ -0.78
C9orf3-221ENST00000489562 GFI1BQ5VTD9 330 aa10.15□□□□□ -0.78
C9orf3-221ENST00000489562 C8orf49Q96NF6 230 aa10.15□□□□□ -0.78
C9orf3-221ENST00000489562 ASCL2Q99929 193 aa10.15□□□□□ -0.78
C9orf3-221ENST00000489562 MLST8Q9BVC4 326 aa10.15□□□□□ -0.78
C9orf3-221ENST00000489562 TRAV12-2A0A075B6T6 113 aa10.14□□□□□ -0.79
C9orf3-221ENST00000489562 J3KRW8 73 aa10.14□□□□□ -0.79
C9orf3-221ENST00000489562 RNASE4P34096 147 aaKnown RBP10.14□□□□□ -0.79
C9orf3-221ENST00000489562 Q6AWC8 147 aa10.14□□□□□ -0.79
C9orf3-221ENST00000489562 NIPSNAP3BQ9BS92 247 aa10.14□□□□□ -0.79
C9orf3-221ENST00000489562 GOLT1BQ9Y3E0 138 aa10.14□□□□□ -0.79
C9orf3-221ENST00000489562 DNAH3Q8TD57 4116 aa10.14□□□□□ -0.79
C9orf3-221ENST00000489562 TRAV21A0A0B4J279 112 aa10.13□□□□□ -0.79
C9orf3-221ENST00000489562 TMEM218A2RU14 115 aa10.13□□□□□ -0.79
C9orf3-221ENST00000489562 GCGP01275 180 aa10.13□□□□□ -0.79
C9orf3-221ENST00000489562 PFN1P07737 140 aaKnown RBP10.13□□□□□ -0.79
C9orf3-221ENST00000489562 BTN1A1Q13410 526 aa10.13□□□□□ -0.79
C9orf3-221ENST00000489562 TMEM241Q24JQ0 296 aa10.13□□□□□ -0.79
C9orf3-221ENST00000489562 PRR9Q5T870 116 aa10.13□□□□□ -0.79
C9orf3-221ENST00000489562 CSNK1G2-AS1Q8NCQ2 148 aa10.13□□□□□ -0.79
C9orf3-221ENST00000489562 ZC2HC1AQ96GY0 325 aa10.13□□□□□ -0.79
C9orf3-221ENST00000489562 NAT8Q9UHE5 227 aa10.13□□□□□ -0.79
C9orf3-221ENST00000489562 TP53TG1Q9Y2A0 90 aa10.13□□□□□ -0.79
C9orf3-221ENST00000489562 TRAV12-3A0A0B4J271 114 aa10.12□□□□□ -0.79
C9orf3-221ENST00000489562 FABP5P3A8MUU1 101 aa10.12□□□□□ -0.79
C9orf3-221ENST00000489562 H7BYZ3 331 aa10.12□□□□□ -0.79
C9orf3-221ENST00000489562 IGLV2-8P01709 118 aa10.12□□□□□ -0.79
C9orf3-221ENST00000489562 KIR3DS1Q14943 382 aa10.12□□□□□ -0.79
C9orf3-221ENST00000489562 FAM162BQ5T6X4 162 aa10.12□□□□□ -0.79
C9orf3-221ENST00000489562 NHLRC2Q8NBF2 726 aa10.12□□□□□ -0.79
C9orf3-221ENST00000489562 RCHY1Q96PM5 261 aa10.12□□□□□ -0.79
C9orf3-221ENST00000489562 B9D2Q9BPU9 175 aa10.12□□□□□ -0.79
C9orf3-221ENST00000489562 TMEM208Q9BTX3 173 aa10.12□□□□□ -0.79
C9orf3-221ENST00000489562 ZNF324O75467 553 aaPredicted RBP10.11□□□□□ -0.79
C9orf3-221ENST00000489562 MGST1P10620 155 aaKnown RBP10.11□□□□□ -0.79
C9orf3-221ENST00000489562 DEFB135Q30KP9 77 aa10.11□□□□□ -0.79
C9orf3-221ENST00000489562 ZNF705AQ6ZN79 300 aaPredicted RBP10.11□□□□□ -0.79
C9orf3-221ENST00000489562 OCC1Q8TAD7 63 aa10.11□□□□□ -0.79
C9orf3-221ENST00000489562 RNF183Q96D59 192 aa10.11□□□□□ -0.79
C9orf3-221ENST00000489562 PYGO2Q9BRQ0 406 aa10.11□□□□□ -0.79
C9orf3-221ENST00000489562 PGPEP1LA6NFU8 196 aa10.1□□□□□ -0.79
C9orf3-221ENST00000489562 ZNF80P51504 273 aaPredicted RBP10.1□□□□□ -0.79
C9orf3-221ENST00000489562 LINC01551Q86U37 167 aa10.1□□□□□ -0.79
C9orf3-221ENST00000489562 SBSPONQ8IVN8 264 aa10.1□□□□□ -0.79
C9orf3-221ENST00000489562 C1orf158Q8N1D5 194 aa10.1□□□□□ -0.79
C9orf3-221ENST00000489562 NEU1Q99519 415 aa10.1□□□□□ -0.79
C9orf3-221ENST00000489562 SPATA25Q9BR10 227 aa10.1□□□□□ -0.79
C9orf3-221ENST00000489562 LINC00467Q9BRT7 94 aa10.1□□□□□ -0.79
C9orf3-221ENST00000489562 SEC11CQ9BY50 192 aa10.1□□□□□ -0.79
C9orf3-221ENST00000489562 SMIM9A6NGZ8 99 aa10.09□□□□□ -0.79
C9orf3-221ENST00000489562 F8W036 122 aa10.09□□□□□ -0.79
C9orf3-221ENST00000489562 SPRY2O43597 315 aa10.09□□□□□ -0.79
C9orf3-221ENST00000489562 RBMY1A1P0DJD3 496 aaKnown RBP10.09□□□□□ -0.79
C9orf3-221ENST00000489562 RBMY1CP0DJD4 496 aa10.09□□□□□ -0.79
C9orf3-221ENST00000489562 PNRC1Q12796 327 aaPredicted RBP10.09□□□□□ -0.79
C9orf3-221ENST00000489562 RBMY1FQ15415 496 aaKnown RBP10.09□□□□□ -0.79
C9orf3-221ENST00000489562 PRR27Q6MZM9 219 aa10.09□□□□□ -0.79
C9orf3-221ENST00000489562 DAZAP1Q96EP5 407 aaKnown RBP10.09□□□□□ -0.79
C9orf3-221ENST00000489562 KCNS1Q96KK3 526 aa10.09□□□□□ -0.79
C9orf3-221ENST00000489562 LINC01587Q99440 93 aa10.09□□□□□ -0.79
C9orf3-221ENST00000489562 TM2D3Q9BRN9 247 aa10.09□□□□□ -0.79
C9orf3-221ENST00000489562 SDF2L1Q9HCN8 221 aa10.09□□□□□ -0.79
C9orf3-221ENST00000489562 IGHV3OR16-12A0A075B7B8 117 aa10.08□□□□□ -0.8
C9orf3-221ENST00000489562 IGHV1OR15-1A0A075B7D0 117 aa10.08□□□□□ -0.8
C9orf3-221ENST00000489562 SH2D1AO60880 128 aa10.08□□□□□ -0.8
C9orf3-221ENST00000489562 CRIP1P50238 77 aa10.08□□□□□ -0.8
C9orf3-221ENST00000489562 RPL23P62829 140 aaKnown RBP10.08□□□□□ -0.8
C9orf3-221ENST00000489562 TDRG1Q3Y452 100 aa10.08□□□□□ -0.8
C9orf3-221ENST00000489562 FAM159AQ6UWV7 190 aa10.08□□□□□ -0.8
C9orf3-221ENST00000489562 ZMAT4Q9H898 229 aa10.08□□□□□ -0.8
C9orf3-221ENST00000489562 C19orf71A6NCJ1 209 aa10.07□□□□□ -0.8
C9orf3-221ENST00000489562 KRBOX1C9JBD0 128 aa10.07□□□□□ -0.8
C9orf3-221ENST00000489562 K7EN84 100 aa10.07□□□□□ -0.8
C9orf3-221ENST00000489562 NHLRC4P0CG21 123 aaPredicted RBP10.07□□□□□ -0.8
C9orf3-221ENST00000489562 ADCYAP1P18509 176 aa10.07□□□□□ -0.8
C9orf3-221ENST00000489562 ADIRFQ15847 76 aa10.07□□□□□ -0.8
C9orf3-221ENST00000489562 LINC01559Q495D7 138 aa10.07□□□□□ -0.8
C9orf3-221ENST00000489562 FAM231DQ6ZW35 169 aa10.07□□□□□ -0.8
C9orf3-221ENST00000489562 OR11H2Q8NH07 326 aa10.07□□□□□ -0.8
C9orf3-221ENST00000489562 OVOL2Q9BRP0 275 aa10.07□□□□□ -0.8
C9orf3-221ENST00000489562 P01737 135 aa10.06□□□□□ -0.8
C9orf3-221ENST00000489562 MIFP14174 115 aa10.06□□□□□ -0.8
C9orf3-221ENST00000489562 OR5I1Q13606 314 aa10.06□□□□□ -0.8
C9orf3-221ENST00000489562 RRN3P1Q2M238 152 aa10.06□□□□□ -0.8
C9orf3-221ENST00000489562 ANXA2RQ3ZCQ2 193 aa10.06□□□□□ -0.8
C9orf3-221ENST00000489562 C10orf91Q5T1B1 145 aa10.06□□□□□ -0.8
C9orf3-221ENST00000489562 IBA57Q5T440 356 aaKnown RBP10.06□□□□□ -0.8
C9orf3-221ENST00000489562 ZNF493Q6ZR52 646 aa10.06□□□□□ -0.8
C9orf3-221ENST00000489562 SLC7A5P1Q8MH63 180 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 164.2 ms