RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 NDFIP1Q9BT67 221 aa13.9□□□□□ -0.18
COL9A3-205ENST00000466192 CUBNO60494 3623 aa13.9□□□□□ -0.18
COL9A3-205ENST00000466192 GPX1P07203 203 aa13.89□□□□□ -0.19
COL9A3-205ENST00000466192 PMCHP20382 165 aa13.89□□□□□ -0.19
COL9A3-205ENST00000466192 Q8N2B8 174 aa13.89□□□□□ -0.19
COL9A3-205ENST00000466192 MYOZ3Q8TDC0 251 aa13.89□□□□□ -0.19
COL9A3-205ENST00000466192 C16orf92Q96LL3 132 aa13.89□□□□□ -0.19
COL9A3-205ENST00000466192 DAZ1Q9NQZ3 744 aaKnown RBP13.89□□□□□ -0.19
COL9A3-205ENST00000466192 ANK3Q12955 4377 aaKnown RBP13.89□□□□□ -0.19
COL9A3-205ENST00000466192 IGHV7-4-1A0A0J9YVY3 117 aa13.89□□□□□ -0.19
COL9A3-205ENST00000466192 RBAKDNA6NC62 111 aa13.89□□□□□ -0.19
COL9A3-205ENST00000466192 EDN2P20800 178 aa13.89□□□□□ -0.19
COL9A3-205ENST00000466192 AMTP48728 403 aa13.89□□□□□ -0.19
COL9A3-205ENST00000466192 TEX29Q8N6K0 151 aa13.89□□□□□ -0.19
COL9A3-205ENST00000466192 ELANEP08246 267 aa13.88□□□□□ -0.19
COL9A3-205ENST00000466192 RHPN1-AS1Q9BWJ2 59 aa13.88□□□□□ -0.19
COL9A3-205ENST00000466192 BMI1P35226 326 aa13.88□□□□□ -0.19
COL9A3-205ENST00000466192 RIGQ13278 110 aa13.88□□□□□ -0.19
COL9A3-205ENST00000466192 KLF5Q13887 457 aaPredicted RBP13.88□□□□□ -0.19
COL9A3-205ENST00000466192 FAM106AQ4KMX7 169 aa13.88□□□□□ -0.19
COL9A3-205ENST00000466192 Q6AWC8 147 aa13.88□□□□□ -0.19
COL9A3-205ENST00000466192 MRPL53Q96EL3 112 aaKnown RBP13.88□□□□□ -0.19
COL9A3-205ENST00000466192 AGPAT4-IT1Q9H0P7 198 aa13.88□□□□□ -0.19
COL9A3-205ENST00000466192 NF1P21359 2839 aa13.87□□□□□ -0.19
COL9A3-205ENST00000466192 ZNF324O75467 553 aaPredicted RBP13.87□□□□□ -0.19
COL9A3-205ENST00000466192 PCP4P48539 62 aa13.87□□□□□ -0.19
COL9A3-205ENST00000466192 FAM19A2Q8N3H0 131 aa13.87□□□□□ -0.19
COL9A3-205ENST00000466192 K7EMT4 169 aa13.86□□□□□ -0.19
COL9A3-205ENST00000466192 RPL11P62913 178 aaKnown RBP13.86□□□□□ -0.19
COL9A3-205ENST00000466192 LYZL1Q6UWQ5 148 aa13.86□□□□□ -0.19
COL9A3-205ENST00000466192 RNF152Q8N8N0 203 aa13.86□□□□□ -0.19
COL9A3-205ENST00000466192 C20orf173Q96LM9 149 aa13.86□□□□□ -0.19
COL9A3-205ENST00000466192 SMPXQ9UHP9 88 aa13.86□□□□□ -0.19
COL9A3-205ENST00000466192 SELENOKQ9Y6D0 94 aa13.86□□□□□ -0.19
COL9A3-205ENST00000466192 LOC102724200A0A096LPH7 203 aaPredicted RBP13.86□□□□□ -0.19
COL9A3-205ENST00000466192 SOCS3O14543 225 aa13.86□□□□□ -0.19
COL9A3-205ENST00000466192 CD5LO43866 347 aa13.86□□□□□ -0.19
COL9A3-205ENST00000466192 TMEM78Q5T7P6 136 aa13.86□□□□□ -0.19
COL9A3-205ENST00000466192 TMEM86BQ8N661 226 aa13.86□□□□□ -0.19
COL9A3-205ENST00000466192 BORCS7Q96B45 105 aa13.86□□□□□ -0.19
COL9A3-205ENST00000466192 MUC21A0A0G2JKD1 596 aa13.85□□□□□ -0.19
COL9A3-205ENST00000466192 MUC21A0A140T8X8 626 aa13.85□□□□□ -0.19
COL9A3-205ENST00000466192 ORM1P02763 201 aa13.85□□□□□ -0.19
COL9A3-205ENST00000466192 LGALS1P09382 135 aaKnown RBP13.85□□□□□ -0.19
COL9A3-205ENST00000466192 NTF3P20783 257 aa13.85□□□□□ -0.19
COL9A3-205ENST00000466192 C21orf62-AS1Q17RA5 79 aa13.85□□□□□ -0.19
COL9A3-205ENST00000466192 MUC21Q5SSG8 566 aa13.85□□□□□ -0.19
COL9A3-205ENST00000466192 RNF114Q9Y508 228 aa13.85□□□□□ -0.19
COL9A3-205ENST00000466192 FABP5P3A8MUU1 101 aa13.85□□□□□ -0.19
COL9A3-205ENST00000466192 ANKRD39Q53RE8 183 aa13.85□□□□□ -0.19
COL9A3-205ENST00000466192 UBE2E2Q96LR5 201 aa13.85□□□□□ -0.19
COL9A3-205ENST00000466192 NRN1Q9NPD7 142 aa13.85□□□□□ -0.19
COL9A3-205ENST00000466192 IGKV3-7A0A075B6H7 116 aa13.84□□□□□ -0.19
COL9A3-205ENST00000466192 TDRG1Q3Y452 100 aa13.84□□□□□ -0.19
COL9A3-205ENST00000466192 RNASEKQ6P5S7 137 aaKnown RBP13.84□□□□□ -0.19
COL9A3-205ENST00000466192 YAE1D1Q9NRH1 226 aa13.84□□□□□ -0.19
COL9A3-205ENST00000466192 CLEC5AQ9NY25 188 aa13.84□□□□□ -0.19
COL9A3-205ENST00000466192 FAM181BA6NEQ2 426 aa13.83□□□□□ -0.19
COL9A3-205ENST00000466192 DNAJC9-AS1A6NH13 148 aa13.83□□□□□ -0.19
COL9A3-205ENST00000466192 ZNF138P52744 262 aa13.83□□□□□ -0.19
COL9A3-205ENST00000466192 ZNF575Q86XF7 245 aa13.83□□□□□ -0.19
COL9A3-205ENST00000466192 ZNF738Q8NE65 137 aa13.83□□□□□ -0.19
COL9A3-205ENST00000466192 IGHV4OR15-8A0A075B7B6 117 aa13.83□□□□□ -0.2
COL9A3-205ENST00000466192 A0A087WW49 117 aa13.83□□□□□ -0.2
COL9A3-205ENST00000466192 A0A1B0GW15 77 aa13.83□□□□□ -0.2
COL9A3-205ENST00000466192 M0QZ24 198 aa13.83□□□□□ -0.2
COL9A3-205ENST00000466192 HSBP1O75506 76 aa13.83□□□□□ -0.2
COL9A3-205ENST00000466192 C9orf47Q6ZRZ4 202 aa13.83□□□□□ -0.2
COL9A3-205ENST00000466192 UFC1Q9Y3C8 167 aa13.83□□□□□ -0.2
COL9A3-205ENST00000466192 TMEM213A2RRL7 107 aa13.82□□□□□ -0.2
COL9A3-205ENST00000466192 KRTDAPP60985 99 aa13.82□□□□□ -0.2
COL9A3-205ENST00000466192 DMRTA1Q5VZB9 504 aa13.82□□□□□ -0.2
COL9A3-205ENST00000466192 NIT1Q86X76 327 aa13.82□□□□□ -0.2
COL9A3-205ENST00000466192 KLHDC1Q8N7A1 406 aa13.82□□□□□ -0.2
COL9A3-205ENST00000466192 RPS20P60866 119 aaKnown RBP13.82□□□□□ -0.2
COL9A3-205ENST00000466192 FER1L6-AS1Q8NA97 138 aa13.82□□□□□ -0.2
COL9A3-205ENST00000466192 URB1-AS1Q96HZ7 61 aa13.82□□□□□ -0.2
COL9A3-205ENST00000466192 VAMP8Q9BV40 100 aa13.82□□□□□ -0.2
COL9A3-205ENST00000466192 ESM1Q9NQ30 184 aa13.82□□□□□ -0.2
COL9A3-205ENST00000466192 MTORP42345 2549 aa13.81□□□□□ -0.2
COL9A3-205ENST00000466192 COL5A1-AS1Q5SY13 56 aa13.81□□□□□ -0.2
COL9A3-205ENST00000466192 PAM16Q9Y3D7 125 aa13.81□□□□□ -0.2
COL9A3-205ENST00000466192 SRD5A1P18405 259 aa13.81□□□□□ -0.2
COL9A3-205ENST00000466192 C18orf65Q6ZTR6 163 aa13.81□□□□□ -0.2
COL9A3-205ENST00000466192 GATD1Q8NB37 220 aa13.81□□□□□ -0.2
COL9A3-205ENST00000466192 SYNJ2BPP57105 145 aa13.8□□□□□ -0.2
COL9A3-205ENST00000466192 DEFB1P60022 68 aa13.8□□□□□ -0.2
COL9A3-205ENST00000466192 Q6ZSV7 163 aa13.8□□□□□ -0.2
COL9A3-205ENST00000466192 IGLC6P0CF74 106 aa13.79□□□□□ -0.2
COL9A3-205ENST00000466192 HOXD3P31249 432 aaPredicted RBP13.79□□□□□ -0.2
COL9A3-205ENST00000466192 SRSF2Q01130 221 aaKnown RBP13.79□□□□□ -0.2
COL9A3-205ENST00000466192 M0R2Z0 102 aa13.79□□□□□ -0.2
COL9A3-205ENST00000466192 CTRLP40313 264 aa13.79□□□□□ -0.2
COL9A3-205ENST00000466192 LINC01559Q495D7 138 aa13.79□□□□□ -0.2
COL9A3-205ENST00000466192 TCTEX1D4Q5JR98 221 aa13.79□□□□□ -0.2
COL9A3-205ENST00000466192 ZNF493Q6ZR52 646 aa13.79□□□□□ -0.2
COL9A3-205ENST00000466192 TWIST1Q15672 202 aa13.78□□□□□ -0.2
COL9A3-205ENST00000466192 Q6ZQT7 251 aa13.78□□□□□ -0.2
COL9A3-205ENST00000466192 C11orf21Q9P2W6 132 aa13.78□□□□□ -0.2
COL9A3-205ENST00000466192 IGKV3D-20A0A0C4DH25 116 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms