RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 ATP5G2Q06055 141 aa6.78□□□□□ -1.32
USP40-203ENST00000427112 RBPJQ06330 500 aa6.78□□□□□ -1.32
USP40-203ENST00000427112 LY6EQ16553 131 aa6.78□□□□□ -1.32
USP40-203ENST00000427112 MRPL51Q4U2R6 128 aaKnown RBP6.78□□□□□ -1.32
USP40-203ENST00000427112 THAP8Q8NA92 274 aa6.78□□□□□ -1.32
USP40-203ENST00000427112 TRGV9Q99603 122 aa6.78□□□□□ -1.32
USP40-203ENST00000427112 OTORQ9NRC9 128 aa6.78□□□□□ -1.32
USP40-203ENST00000427112 PKD1L2Q7Z442 2459 aa6.78□□□□□ -1.32
USP40-203ENST00000427112 I3L2K1 104 aa6.77□□□□□ -1.33
USP40-203ENST00000427112 SIGLEC15Q6ZMC9 328 aa6.77□□□□□ -1.33
USP40-203ENST00000427112 IL17RELQ6ZVW7 336 aa6.77□□□□□ -1.33
USP40-203ENST00000427112 PIP4P1Q86T03 277 aa6.77□□□□□ -1.33
USP40-203ENST00000427112 ZNF747Q9BV97 191 aa6.77□□□□□ -1.33
USP40-203ENST00000427112 NDUFA3O95167 84 aa6.77□□□□□ -1.33
USP40-203ENST00000427112 LEPP41159 167 aa6.77□□□□□ -1.33
USP40-203ENST00000427112 EFNA4P52798 201 aa6.77□□□□□ -1.33
USP40-203ENST00000427112 C3orf36Q3SXR2 165 aa6.77□□□□□ -1.33
USP40-203ENST00000427112 FAM231DQ6ZW35 169 aa6.77□□□□□ -1.33
USP40-203ENST00000427112 JMJD8Q96S16 334 aa6.77□□□□□ -1.33
USP40-203ENST00000427112 FOXC2Q99958 501 aa6.77□□□□□ -1.33
USP40-203ENST00000427112 M0R381 172 aa6.77□□□□□ -1.33
USP40-203ENST00000427112 SNCGO76070 127 aa6.77□□□□□ -1.33
USP40-203ENST00000427112 TRGV3P03979 118 aa6.77□□□□□ -1.33
USP40-203ENST00000427112 COX19Q49B96 90 aa6.77□□□□□ -1.33
USP40-203ENST00000427112 MRPS16Q9Y3D3 137 aaKnown RBP6.77□□□□□ -1.33
USP40-203ENST00000427112 IGKV2D-26A0A0A0MRZ7 120 aa6.76□□□□□ -1.33
USP40-203ENST00000427112 TRAV8-2A0A0B4J237 113 aa6.76□□□□□ -1.33
USP40-203ENST00000427112 DLX6P56179 175 aa6.76□□□□□ -1.33
USP40-203ENST00000427112 FAM71F2Q6NXP2 309 aa6.76□□□□□ -1.33
USP40-203ENST00000427112 BRD3OSQ6XYD6 125 aa6.76□□□□□ -1.33
USP40-203ENST00000427112 ZNF414Q96IQ9 312 aa6.76□□□□□ -1.33
USP40-203ENST00000427112 PRSS22Q9GZN4 317 aa6.76□□□□□ -1.33
USP40-203ENST00000427112 ST20Q9HBF5 79 aa6.76□□□□□ -1.33
USP40-203ENST00000427112 NBR2O15453 112 aa6.76□□□□□ -1.33
USP40-203ENST00000427112 HTN1P15515 57 aa6.76□□□□□ -1.33
USP40-203ENST00000427112 NF1P21359 2839 aa6.76□□□□□ -1.33
USP40-203ENST00000427112 F6UB75 175 aa6.76□□□□□ -1.33
USP40-203ENST00000427112 APOBEC3AP31941 199 aaPredicted RBP6.76□□□□□ -1.33
USP40-203ENST00000427112 KLF5Q13887 457 aaPredicted RBP6.76□□□□□ -1.33
USP40-203ENST00000427112 MRPL23Q16540 153 aaKnown RBP6.76□□□□□ -1.33
USP40-203ENST00000427112 ZC2HC1BQ5TFG8 222 aa6.76□□□□□ -1.33
USP40-203ENST00000427112 ZNF502Q8TBZ5 544 aa6.76□□□□□ -1.33
USP40-203ENST00000427112 SCRT2Q9NQ03 307 aa6.76□□□□□ -1.33
USP40-203ENST00000427112 C21orf62Q9NYP8 219 aa6.76□□□□□ -1.33
USP40-203ENST00000427112 PRRC2AP48634 2157 aaKnown RBP6.76□□□□□ -1.33
USP40-203ENST00000427112 IGLV1-47P01700 117 aa6.75□□□□□ -1.33
USP40-203ENST00000427112 PF4V1P10720 104 aa6.75□□□□□ -1.33
USP40-203ENST00000427112 FAM162BQ5T6X4 162 aa6.75□□□□□ -1.33
USP40-203ENST00000427112 ARPC1AQ92747 370 aa6.75□□□□□ -1.33
USP40-203ENST00000427112 SHANK2-AS3Q9BTD1 123 aa6.75□□□□□ -1.33
USP40-203ENST00000427112 RPL13AP40429 203 aaKnown RBP6.75□□□□□ -1.33
USP40-203ENST00000427112 C15orf32Q32M92 178 aa6.75□□□□□ -1.33
USP40-203ENST00000427112 PIP4P2Q8N4L2 257 aa6.75□□□□□ -1.33
USP40-203ENST00000427112 DPM3Q9P2X0 92 aa6.75□□□□□ -1.33
USP40-203ENST00000427112 A0A096LNJ9 63 aa6.75□□□□□ -1.33
USP40-203ENST00000427112 LYRM7Q5U5X0 104 aa6.75□□□□□ -1.33
USP40-203ENST00000427112 PET117Q6UWS5 81 aa6.75□□□□□ -1.33
USP40-203ENST00000427112 C2orf91Q6ZV80 131 aa6.75□□□□□ -1.33
USP40-203ENST00000427112 IFI27L1Q96BM0 104 aa6.75□□□□□ -1.33
USP40-203ENST00000427112 CFAP46Q8IYW2 2715 aa6.75□□□□□ -1.33
USP40-203ENST00000427112 MGPP08493 103 aa6.74□□□□□ -1.33
USP40-203ENST00000427112 LY6DQ14210 128 aa6.74□□□□□ -1.33
USP40-203ENST00000427112 ORMDL3Q8N138 153 aa6.74□□□□□ -1.33
USP40-203ENST00000427112 LINC00477Q96M19 166 aa6.74□□□□□ -1.33
USP40-203ENST00000427112 MRPL16Q9NX20 251 aaKnown RBP6.74□□□□□ -1.33
USP40-203ENST00000427112 KLF12Q9Y4X4 402 aa6.74□□□□□ -1.33
USP40-203ENST00000427112 CRYGCP07315 174 aa6.74□□□□□ -1.33
USP40-203ENST00000427112 SYT8Q8NBV8 401 aa6.74□□□□□ -1.33
USP40-203ENST00000427112 NUP37Q8NFH4 326 aa6.74□□□□□ -1.33
USP40-203ENST00000427112 TRAV40A0A0B4J280 105 aa6.74□□□□□ -1.33
USP40-203ENST00000427112 H3BMG7 143 aa6.74□□□□□ -1.33
USP40-203ENST00000427112 ZFP36P26651 326 aaKnown RBP6.74□□□□□ -1.33
USP40-203ENST00000427112 MFAP4P55083 255 aa6.74□□□□□ -1.33
USP40-203ENST00000427112 GAGE2BQ13066 116 aa6.74□□□□□ -1.33
USP40-203ENST00000427112 TMEM95Q3KNT9 176 aa6.74□□□□□ -1.33
USP40-203ENST00000427112 GAGE2EQ4V326 116 aa6.74□□□□□ -1.33
USP40-203ENST00000427112 ATP5L2Q7Z4Y8 100 aa6.74□□□□□ -1.33
USP40-203ENST00000427112 VMO1Q7Z5L0 202 aa6.74□□□□□ -1.33
USP40-203ENST00000427112 TMEM158Q8WZ71 300 aa6.74□□□□□ -1.33
USP40-203ENST00000427112 GAGE2DQ9UEU5 116 aa6.74□□□□□ -1.33
USP40-203ENST00000427112 NIPBLQ6KC79 2804 aaeCLIP6.73□□□□□ -1.33
USP40-203ENST00000427112 GAGE13Q4V321 117 aa6.73□□□□□ -1.33
USP40-203ENST00000427112 CFHR4Q92496 578 aa6.73□□□□□ -1.33
USP40-203ENST00000427112 FANCD2OSQ96PS1 177 aa6.73□□□□□ -1.33
USP40-203ENST00000427112 FXYD2P54710 66 aa6.73□□□□□ -1.33
USP40-203ENST00000427112 CHCHD1Q96BP2 118 aaKnown RBP6.73□□□□□ -1.33
USP40-203ENST00000427112 ZNF479Q96JC4 524 aa6.73□□□□□ -1.33
USP40-203ENST00000427112 CYSLTR1Q9Y271 337 aa6.73□□□□□ -1.33
USP40-203ENST00000427112 CD5LO43866 347 aa6.73□□□□□ -1.33
USP40-203ENST00000427112 HIST1H1AQ02539 215 aaPredicted RBP6.73□□□□□ -1.33
USP40-203ENST00000427112 KLRB1Q12918 225 aa6.73□□□□□ -1.33
USP40-203ENST00000427112 C5orf64Q2M2E5 130 aa6.73□□□□□ -1.33
USP40-203ENST00000427112 ZFAND6Q6FIF0 208 aa6.73□□□□□ -1.33
USP40-203ENST00000427112 H3BRN7 92 aa6.72□□□□□ -1.33
USP40-203ENST00000427112 HAX1O00165 279 aa6.72□□□□□ -1.33
USP40-203ENST00000427112 SPANXN1Q5VSR9 72 aa6.72□□□□□ -1.33
USP40-203ENST00000427112 FAM104BQ5XKR9 115 aa6.72□□□□□ -1.33
USP40-203ENST00000427112 PRR25Q96S07 402 aa6.72□□□□□ -1.33
USP40-203ENST00000427112 RAXQ9Y2V3 346 aa6.72□□□□□ -1.33
USP40-203ENST00000427112 DEFB125Q8N687 156 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms