RNA–Protein interactions for RNA: ENST00000409543.6

TSPAN4-209, Transcript of tetraspanin 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene TSPAN4, Length 1,031 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-209ENST00000409543 A0A0J9YY99 117 aa13.66□□□□□ -0.22
TSPAN4-209ENST00000409543 PGPA6NDG6 321 aa13.66□□□□□ -0.22
TSPAN4-209ENST00000409543 SPINK4O60575 86 aa13.66□□□□□ -0.22
TSPAN4-209ENST00000409543 FAM74A1Q5RGS3 127 aa13.66□□□□□ -0.22
TSPAN4-209ENST00000409543 ARL6IP6Q8N6S5 226 aa13.66□□□□□ -0.22
TSPAN4-209ENST00000409543 OR2G3Q8NGZ4 309 aa13.66□□□□□ -0.22
TSPAN4-209ENST00000409543 TMED6Q8WW62 240 aa13.66□□□□□ -0.22
TSPAN4-209ENST00000409543 HYLS1Q96M11 299 aa13.66□□□□□ -0.22
TSPAN4-209ENST00000409543 TP53TG3Q9ULZ0 132 aa13.66□□□□□ -0.22
TSPAN4-209ENST00000409543 LINC00588Q9Y4M8 146 aa13.66□□□□□ -0.22
TSPAN4-209ENST00000409543 GIPP09681 153 aaPredicted RBP13.65□□□□□ -0.22
TSPAN4-209ENST00000409543 C1orf134Q5TEV5 83 aa13.65□□□□□ -0.22
TSPAN4-209ENST00000409543 CMTM2Q8TAZ6 248 aa13.65□□□□□ -0.22
TSPAN4-209ENST00000409543 ARPC5LQ9BPX5 153 aa13.65□□□□□ -0.22
TSPAN4-209ENST00000409543 PSMG3Q9BT73 122 aaPredicted RBP13.65□□□□□ -0.22
TSPAN4-209ENST00000409543 Q5BKY6 102 aa13.64□□□□□ -0.23
TSPAN4-209ENST00000409543 SSX7Q7RTT5 188 aa13.64□□□□□ -0.23
TSPAN4-209ENST00000409543 HSD17B11Q8NBQ5 300 aa13.64□□□□□ -0.23
TSPAN4-209ENST00000409543 NBDYA0A0U1RRE5 68 aa13.63□□□□□ -0.23
TSPAN4-209ENST00000409543 HMGB3O15347 200 aaKnown RBP13.63□□□□□ -0.23
TSPAN4-209ENST00000409543 Q6AWC8 147 aa13.63□□□□□ -0.23
TSPAN4-209ENST00000409543 ATP6V0CP27449 155 aa13.62□□□□□ -0.23
TSPAN4-209ENST00000409543 CDC34P49427 236 aaPredicted RBP13.62□□□□□ -0.23
TSPAN4-209ENST00000409543 SERF2P84101 59 aa13.62□□□□□ -0.23
TSPAN4-209ENST00000409543 ZNF415Q09FC8 603 aa13.62□□□□□ -0.23
TSPAN4-209ENST00000409543 MBP02144 154 aa13.61□□□□□ -0.23
TSPAN4-209ENST00000409543 STAG3L2P0CL84 134 aa13.61□□□□□ -0.23
TSPAN4-209ENST00000409543 STAG3L3P0CL85 134 aa13.61□□□□□ -0.23
TSPAN4-209ENST00000409543 ARL14EPLP0DKL9 152 aa13.61□□□□□ -0.23
TSPAN4-209ENST00000409543 MUC21Q5SSG8 566 aa13.61□□□□□ -0.23
TSPAN4-209ENST00000409543 INO80EQ8NBZ0 244 aaPredicted RBP13.61□□□□□ -0.23
TSPAN4-209ENST00000409543 VSIG2Q96IQ7 327 aa13.61□□□□□ -0.23
TSPAN4-209ENST00000409543 ST6GAL2Q96JF0 529 aa13.61□□□□□ -0.23
TSPAN4-209ENST00000409543 RPH3ALQ9UNE2 315 aa13.61□□□□□ -0.23
TSPAN4-209ENST00000409543 ESRGQ1W209 222 aa13.6□□□□□ -0.23
TSPAN4-209ENST00000409543 GOLT1AQ6ZVE7 132 aa13.6□□□□□ -0.23
TSPAN4-209ENST00000409543 SUN5Q8TC36 379 aa13.6□□□□□ -0.23
TSPAN4-209ENST00000409543 RAB24Q969Q5 203 aa13.6□□□□□ -0.23
TSPAN4-209ENST00000409543 MUC4Q99102 2169 aa13.6□□□□□ -0.23
TSPAN4-209ENST00000409543 MRPL16Q9NX20 251 aaKnown RBP13.6□□□□□ -0.23
TSPAN4-209ENST00000409543 FAM159AQ6UWV7 190 aa13.59□□□□□ -0.23
TSPAN4-209ENST00000409543 Q9H8V8 135 aa13.59□□□□□ -0.23
TSPAN4-209ENST00000409543 MDFICQ9P1T7 246 aa13.59□□□□□ -0.23
TSPAN4-209ENST00000409543 TNFSF18Q9UNG2 199 aa13.59□□□□□ -0.23
TSPAN4-209ENST00000409543 HERC2O95714 4834 aa13.58□□□□□ -0.24
TSPAN4-209ENST00000409543 PKD1P98161 4303 aa13.58□□□□□ -0.24
TSPAN4-209ENST00000409543 A0A096LPF7 62 aa13.58□□□□□ -0.24
TSPAN4-209ENST00000409543 RNF222A6NCQ9 220 aa13.58□□□□□ -0.24
TSPAN4-209ENST00000409543 GCHFRP30047 84 aa13.58□□□□□ -0.24
TSPAN4-209ENST00000409543 RGS21Q2M5E4 152 aa13.58□□□□□ -0.24
TSPAN4-209ENST00000409543 TDRG1Q3Y452 100 aa13.58□□□□□ -0.24
TSPAN4-209ENST00000409543 UPK3BQ9BT76 320 aa13.58□□□□□ -0.24
TSPAN4-209ENST00000409543 SH3BGRL3Q9H299 93 aa13.58□□□□□ -0.24
TSPAN4-209ENST00000409543 TRGV11A0A075B6L2 103 aa13.57□□□□□ -0.24
TSPAN4-209ENST00000409543 FXYD6-FXYD2A0A087WZ82 144 aa13.57□□□□□ -0.24
TSPAN4-209ENST00000409543 SERTM2A0A1B0GWG4 89 aa13.57□□□□□ -0.24
TSPAN4-209ENST00000409543 GNG5P63218 68 aa13.57□□□□□ -0.24
TSPAN4-209ENST00000409543 OR2T35Q8NGX2 323 aa13.57□□□□□ -0.24
TSPAN4-209ENST00000409543 TVP23CQ96ET8 276 aa13.57□□□□□ -0.24
TSPAN4-209ENST00000409543 ACTR3CQ9C0K3 210 aaPredicted RBP13.57□□□□□ -0.24
TSPAN4-209ENST00000409543 MRPS16Q9Y3D3 137 aaKnown RBP13.57□□□□□ -0.24
TSPAN4-209ENST00000409543 KIAA1109Q2LD37 5005 aa13.57□□□□□ -0.24
TSPAN4-209ENST00000409543 PKHD1P08F94 4074 aa13.56□□□□□ -0.24
TSPAN4-209ENST00000409543 TRAV8-1A0A0A6YYK1 113 aa13.56□□□□□ -0.24
TSPAN4-209ENST00000409543 BORCS7-ASMTA0A0B4J1R7 106 aa13.56□□□□□ -0.24
TSPAN4-209ENST00000409543 PAX4O43316 350 aa13.56□□□□□ -0.24
TSPAN4-209ENST00000409543 IGHV3-53P01767 116 aa13.56□□□□□ -0.24
TSPAN4-209ENST00000409543 SLAQ13239 276 aa13.56□□□□□ -0.24
TSPAN4-209ENST00000409543 TMEM183BQ1AE95 376 aa13.56□□□□□ -0.24
TSPAN4-209ENST00000409543 RPL7L1Q6DKI1 246 aaKnown RBP13.56□□□□□ -0.24
TSPAN4-209ENST00000409543 TMEM183AQ8IXX5 376 aa13.56□□□□□ -0.24
TSPAN4-209ENST00000409543 C6orf223Q8N319 242 aa13.56□□□□□ -0.24
TSPAN4-209ENST00000409543 C5orf17Q8NAS9 161 aa13.56□□□□□ -0.24
TSPAN4-209ENST00000409543 SPXQ9BT56 116 aa13.56□□□□□ -0.24
TSPAN4-209ENST00000409543 TREM1Q9NP99 234 aa13.56□□□□□ -0.24
TSPAN4-209ENST00000409543 PRO0255Q9UI72 69 aa13.56□□□□□ -0.24
TSPAN4-209ENST00000409543 TRAV21A0A0B4J279 112 aa13.55□□□□□ -0.24
TSPAN4-209ENST00000409543 CXorf1O96002 111 aa13.55□□□□□ -0.24
TSPAN4-209ENST00000409543 RASL10AQ92737 203 aa13.55□□□□□ -0.24
TSPAN4-209ENST00000409543 TMEM167BQ9NRX6 74 aa13.55□□□□□ -0.24
TSPAN4-209ENST00000409543 NAGKQ9UJ70 344 aa13.55□□□□□ -0.24
TSPAN4-209ENST00000409543 TCRAP04437 139 aa13.54□□□□□ -0.24
TSPAN4-209ENST00000409543 FHL2Q14192 279 aa13.54□□□□□ -0.24
TSPAN4-209ENST00000409543 TTC32Q5I0X7 151 aa13.54□□□□□ -0.24
TSPAN4-209ENST00000409543 HHLA3Q9XRX5 114 aa13.54□□□□□ -0.24
TSPAN4-209ENST00000409543 F6UZH7 168 aa13.53□□□□□ -0.24
TSPAN4-209ENST00000409543 K7EQM0 130 aa13.53□□□□□ -0.24
TSPAN4-209ENST00000409543 CRYBA4P53673 196 aa13.53□□□□□ -0.24
TSPAN4-209ENST00000409543 IQCF2Q8IXL9 164 aa13.53□□□□□ -0.24
TSPAN4-209ENST00000409543 NDFIP1Q9BT67 221 aa13.53□□□□□ -0.24
TSPAN4-209ENST00000409543 ICOSQ9Y6W8 199 aa13.53□□□□□ -0.24
TSPAN4-209ENST00000409543 DNAH11Q96DT5 4516 aa13.52□□□□□ -0.24
TSPAN4-209ENST00000409543 IGHV3-16A0A0C4DH30 117 aa13.52□□□□□ -0.25
TSPAN4-209ENST00000409543 G3V3Q6 166 aa13.52□□□□□ -0.25
TSPAN4-209ENST00000409543 GNRH2O43555 120 aa13.52□□□□□ -0.25
TSPAN4-209ENST00000409543 SUMO1P63165 101 aaKnown RBP13.52□□□□□ -0.25
TSPAN4-209ENST00000409543 SGK494Q96LW2 274 aa13.52□□□□□ -0.25
TSPAN4-209ENST00000409543 C8orf49Q96NF6 230 aa13.52□□□□□ -0.25
TSPAN4-209ENST00000409543 EPDR1Q9UM22 224 aa13.52□□□□□ -0.25
TSPAN4-209ENST00000409543 DYNC1H1Q14204 4646 aaKnown RBP13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms