RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 HIST1H2BDP58876 126 aa7.03□□□□□ -1.28
LIG4-202ENST00000405925 HIST1H2BCP62807 126 aa7.03□□□□□ -1.28
LIG4-202ENST00000405925 HIST2H2BEQ16778 126 aa7.03□□□□□ -1.28
LIG4-202ENST00000405925 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.03□□□□□ -1.28
LIG4-202ENST00000405925 HIST1H2BHQ93079 126 aa7.03□□□□□ -1.28
LIG4-202ENST00000405925 CCDC140Q96MF4 163 aa7.03□□□□□ -1.28
LIG4-202ENST00000405925 HIST1H2BNQ99877 126 aa7.03□□□□□ -1.28
LIG4-202ENST00000405925 HIST1H2BMQ99879 126 aa7.03□□□□□ -1.28
LIG4-202ENST00000405925 AGPAT4-IT1Q9H0P7 198 aa7.03□□□□□ -1.28
LIG4-202ENST00000405925 USP24Q9UPU5 2620 aa7.03□□□□□ -1.28
LIG4-202ENST00000405925 NMUP48645 174 aa7.03□□□□□ -1.28
LIG4-202ENST00000405925 SRSF2Q01130 221 aaKnown RBP7.03□□□□□ -1.28
LIG4-202ENST00000405925 TMEM97Q5BJF2 176 aa7.03□□□□□ -1.28
LIG4-202ENST00000405925 C10orf99Q6UWK7 81 aa7.03□□□□□ -1.28
LIG4-202ENST00000405925 LYPD6BQ8NI32 183 aa7.03□□□□□ -1.28
LIG4-202ENST00000405925 SMIM12Q96EX1 92 aa7.03□□□□□ -1.28
LIG4-202ENST00000405925 ST20Q9HBF5 79 aa7.03□□□□□ -1.28
LIG4-202ENST00000405925 ATOH7Q8N100 152 aa7.03□□□□□ -1.28
LIG4-202ENST00000405925 OR4C5Q8NGB2 326 aa7.03□□□□□ -1.28
LIG4-202ENST00000405925 DEFB104AQ8WTQ1 72 aa7.03□□□□□ -1.28
LIG4-202ENST00000405925 SMR3AQ99954 134 aa7.03□□□□□ -1.28
LIG4-202ENST00000405925 C2orf70A6NJV1 201 aa7.02□□□□□ -1.28
LIG4-202ENST00000405925 ZNF876PQ49A33 203 aa7.02□□□□□ -1.28
LIG4-202ENST00000405925 C19orf54Q5BKX5 351 aa7.02□□□□□ -1.28
LIG4-202ENST00000405925 ZC2HC1AQ96GY0 325 aa7.02□□□□□ -1.28
LIG4-202ENST00000405925 ZNF492Q9P255 531 aa7.02□□□□□ -1.28
LIG4-202ENST00000405925 A0A087WWL8 130 aa7.02□□□□□ -1.29
LIG4-202ENST00000405925 TMEM89A2RUT3 159 aa7.02□□□□□ -1.29
LIG4-202ENST00000405925 C7orf71A4D174 169 aa7.02□□□□□ -1.29
LIG4-202ENST00000405925 VWC2LB2RUY7 222 aa7.02□□□□□ -1.29
LIG4-202ENST00000405925 D6R8Y8 96 aa7.02□□□□□ -1.29
LIG4-202ENST00000405925 DEFB130BP0DP73 79 aa7.02□□□□□ -1.29
LIG4-202ENST00000405925 DEFB130AP0DP74 79 aa7.02□□□□□ -1.29
LIG4-202ENST00000405925 Q6ZSV7 163 aa7.02□□□□□ -1.29
LIG4-202ENST00000405925 AMN1Q8IY45 258 aa7.02□□□□□ -1.29
LIG4-202ENST00000405925 MCRIP2Q9BUT9 160 aaKnown RBP7.02□□□□□ -1.29
LIG4-202ENST00000405925 WI2-2373I1.2A0A1W2PRP0 233 aa7.02□□□□□ -1.29
LIG4-202ENST00000405925 C16orf54Q6UWD8 224 aa7.02□□□□□ -1.29
LIG4-202ENST00000405925 GPHB5Q86YW7 130 aa7.02□□□□□ -1.29
LIG4-202ENST00000405925 Q8N6K4 173 aa7.02□□□□□ -1.29
LIG4-202ENST00000405925 IFITM10A6NMD0 228 aa7.01□□□□□ -1.29
LIG4-202ENST00000405925 ANXA2RQ3ZCQ2 193 aa7.01□□□□□ -1.29
LIG4-202ENST00000405925 SCGB3A1Q96QR1 104 aa7.01□□□□□ -1.29
LIG4-202ENST00000405925 ATP6V0BQ99437 205 aa7.01□□□□□ -1.29
LIG4-202ENST00000405925 SPAG8Q99932 426 aaPredicted RBP7.01□□□□□ -1.29
LIG4-202ENST00000405925 TMEM213A2RRL7 107 aa7.01□□□□□ -1.29
LIG4-202ENST00000405925 CD28P10747 220 aa7.01□□□□□ -1.29
LIG4-202ENST00000405925 PAPPA-AS1Q5QFB9 102 aa7.01□□□□□ -1.29
LIG4-202ENST00000405925 APRG1Q8IVJ8 170 aa7.01□□□□□ -1.29
LIG4-202ENST00000405925 ZNF324O75467 553 aaPredicted RBP7.01□□□□□ -1.29
LIG4-202ENST00000405925 Q6ZS46 218 aa7.01□□□□□ -1.29
LIG4-202ENST00000405925 MBD6Q96DN6 1003 aa7.01□□□□□ -1.29
LIG4-202ENST00000405925 DPH3P1Q9H4G8 78 aa7.01□□□□□ -1.29
LIG4-202ENST00000405925 PRSS46E5RG02 174 aa7.01□□□□□ -1.29
LIG4-202ENST00000405925 DEFB1P60022 68 aa7.01□□□□□ -1.29
LIG4-202ENST00000405925 ZNF48Q96MX3 618 aaPredicted RBP7.01□□□□□ -1.29
LIG4-202ENST00000405925 GEMIN7Q9H840 131 aaKnown RBP7.01□□□□□ -1.29
LIG4-202ENST00000405925 IGHV1OR15-1A0A075B7D0 117 aa7□□□□□ -1.29
LIG4-202ENST00000405925 SMKR1H3BMG3 65 aa7□□□□□ -1.29
LIG4-202ENST00000405925 AMBPP02760 352 aa7□□□□□ -1.29
LIG4-202ENST00000405925 LINC00614P0C842 121 aa7□□□□□ -1.29
LIG4-202ENST00000405925 HIST2H2BDQ6DRA6 164 aa7□□□□□ -1.29
LIG4-202ENST00000405925 TMEM70Q9BUB7 260 aa7□□□□□ -1.29
LIG4-202ENST00000405925 NXT2Q9NPJ8 142 aaKnown RBP7□□□□□ -1.29
LIG4-202ENST00000405925 K7EMT4 169 aa7□□□□□ -1.29
LIG4-202ENST00000405925 FOXI2Q6ZQN5 318 aa7□□□□□ -1.29
LIG4-202ENST00000405925 TMEM61Q8N0U2 210 aa7□□□□□ -1.29
LIG4-202ENST00000405925 POLR3KQ9Y2Y1 108 aaPredicted RBP7□□□□□ -1.29
LIG4-202ENST00000405925 V9GYV3 84 aa7□□□□□ -1.29
LIG4-202ENST00000405925 ATP5LO75964 103 aa6.99□□□□□ -1.29
LIG4-202ENST00000405925 PMCHL1Q16048 86 aa6.99□□□□□ -1.29
LIG4-202ENST00000405925 CD300EQ496F6 205 aaPredicted RBP6.99□□□□□ -1.29
LIG4-202ENST00000405925 GFI1BQ5VTD9 330 aa6.99□□□□□ -1.29
LIG4-202ENST00000405925 FAM231DQ6ZW35 169 aa6.99□□□□□ -1.29
LIG4-202ENST00000405925 DLX4Q92988 240 aaPredicted RBP6.99□□□□□ -1.29
LIG4-202ENST00000405925 PRAC2D3DTV9 90 aa6.99□□□□□ -1.29
LIG4-202ENST00000405925 HOXA5P20719 270 aa6.99□□□□□ -1.29
LIG4-202ENST00000405925 SRSF9Q13242 221 aaKnown RBP eCLIP6.99□□□□□ -1.29
LIG4-202ENST00000405925 Q1RN00 199 aa6.99□□□□□ -1.29
LIG4-202ENST00000405925 CT83Q5H943 113 aa6.99□□□□□ -1.29
LIG4-202ENST00000405925 C4orf3Q8WVX3 66 aa6.99□□□□□ -1.29
LIG4-202ENST00000405925 TMEM160Q9NX00 188 aa6.99□□□□□ -1.29
LIG4-202ENST00000405925 CFHR3Q02985 330 aa6.99□□□□□ -1.29
LIG4-202ENST00000405925 COTL1Q14019 142 aa6.99□□□□□ -1.29
LIG4-202ENST00000405925 TMEM170BQ5T4T1 132 aa6.99□□□□□ -1.29
LIG4-202ENST00000405925 RASL11AQ6T310 242 aa6.99□□□□□ -1.29
LIG4-202ENST00000405925 PSMG3-AS1Q96PY0 264 aa6.99□□□□□ -1.29
LIG4-202ENST00000405925 K7EN84 100 aa6.98□□□□□ -1.29
LIG4-202ENST00000405925 LTAP01374 205 aa6.98□□□□□ -1.29
LIG4-202ENST00000405925 MYCNOSP40205 109 aa6.98□□□□□ -1.29
LIG4-202ENST00000405925 NIT1Q86X76 327 aa6.98□□□□□ -1.29
LIG4-202ENST00000405925 MRPL53Q96EL3 112 aaKnown RBP6.98□□□□□ -1.29
LIG4-202ENST00000405925 PMCHL2Q9BQD1 86 aa6.98□□□□□ -1.29
LIG4-202ENST00000405925 DMRT1Q9Y5R6 373 aa6.98□□□□□ -1.29
LIG4-202ENST00000405925 TMEM101Q96IK0 257 aa6.98□□□□□ -1.29
LIG4-202ENST00000405925 GFRA4Q9GZZ7 299 aa6.98□□□□□ -1.29
LIG4-202ENST00000405925 FAM231BA6NCW3 169 aa6.98□□□□□ -1.29
LIG4-202ENST00000405925 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.98□□□□□ -1.29
LIG4-202ENST00000405925 HBDP02042 147 aa6.98□□□□□ -1.29
LIG4-202ENST00000405925 SUMO2P61956 95 aaKnown RBP6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms