RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 SACSQ9NZJ4 4579 aa15.47■□□□□ 0.07
CLN3-207ENST00000395653 TRAV8-1A0A0A6YYK1 113 aa15.47■□□□□ 0.07
CLN3-207ENST00000395653 LYSTQ99698 3801 aa15.47■□□□□ 0.07
CLN3-207ENST00000395653 FAM74A7A6NL05 159 aa15.46■□□□□ 0.07
CLN3-207ENST00000395653 UBE2G2P60604 165 aa15.46■□□□□ 0.07
CLN3-207ENST00000395653 ZFP69Q49AA0 526 aa15.46■□□□□ 0.07
CLN3-207ENST00000395653 SLC51BQ86UW2 128 aa15.46■□□□□ 0.07
CLN3-207ENST00000395653 TIMM8BQ9Y5J9 83 aaPredicted RBP15.46■□□□□ 0.07
CLN3-207ENST00000395653 DEFB131BA0A096LNP1 70 aa15.45■□□□□ 0.06
CLN3-207ENST00000395653 TCTAP57738 103 aa15.45■□□□□ 0.06
CLN3-207ENST00000395653 DAD1P61803 113 aa15.45■□□□□ 0.06
CLN3-207ENST00000395653 ANXA2RQ3ZCQ2 193 aa15.45■□□□□ 0.06
CLN3-207ENST00000395653 C9orf62Q8N4C0 152 aa15.45■□□□□ 0.06
CLN3-207ENST00000395653 EIF4E3Q8N5X7 224 aaKnown RBP15.45■□□□□ 0.06
CLN3-207ENST00000395653 CYB561D1Q8N8Q1 229 aa15.45■□□□□ 0.06
CLN3-207ENST00000395653 SFT2D1Q8WV19 159 aa15.45■□□□□ 0.06
CLN3-207ENST00000395653 ATG101Q9BSB4 218 aa15.45■□□□□ 0.06
CLN3-207ENST00000395653 ARL2-SNX15V9GYD0 113 aa15.45■□□□□ 0.06
CLN3-207ENST00000395653 FBLL1A6NHQ2 334 aaKnown RBP15.44■□□□□ 0.06
CLN3-207ENST00000395653 RAB5CP51148 216 aa15.44■□□□□ 0.06
CLN3-207ENST00000395653 Q6AWC8 147 aa15.44■□□□□ 0.06
CLN3-207ENST00000395653 ZNF680Q8NEM1 530 aa15.44■□□□□ 0.06
CLN3-207ENST00000395653 RYR3Q15413 4870 aa15.44■□□□□ 0.06
CLN3-207ENST00000395653 TMEM75Q8N9X5 138 aa15.43■□□□□ 0.06
CLN3-207ENST00000395653 NDFIP1Q9BT67 221 aa15.43■□□□□ 0.06
CLN3-207ENST00000395653 IGHV1OR15-1A0A075B7D0 117 aa15.43■□□□□ 0.06
CLN3-207ENST00000395653 SNURFLB1AK76 121 aa15.43■□□□□ 0.06
CLN3-207ENST00000395653 RGS13O14921 159 aa15.43■□□□□ 0.06
CLN3-207ENST00000395653 IFNA7P01567 189 aa15.43■□□□□ 0.06
CLN3-207ENST00000395653 H2AFB1P0C5Y9 115 aa15.43■□□□□ 0.06
CLN3-207ENST00000395653 Q6ZQT7 251 aa15.43■□□□□ 0.06
CLN3-207ENST00000395653 HIST1H2BAQ96A08 127 aa15.43■□□□□ 0.06
CLN3-207ENST00000395653 TVP23CQ96ET8 276 aa15.43■□□□□ 0.06
CLN3-207ENST00000395653 SGK494Q96LW2 274 aa15.43■□□□□ 0.06
CLN3-207ENST00000395653 TREM1Q9NP99 234 aa15.43■□□□□ 0.06
CLN3-207ENST00000395653 NOP10Q9NPE3 64 aaKnown RBP15.43■□□□□ 0.06
CLN3-207ENST00000395653 PSG8Q9UQ74 426 aa15.43■□□□□ 0.06
CLN3-207ENST00000395653 CBY3A6NI87 242 aa15.42■□□□□ 0.06
CLN3-207ENST00000395653 IGLL5B9A064 214 aa15.42■□□□□ 0.06
CLN3-207ENST00000395653 IGLV2-11P01706 119 aa15.42■□□□□ 0.06
CLN3-207ENST00000395653 FLI1Q01543 452 aaPredicted RBP15.42■□□□□ 0.06
CLN3-207ENST00000395653 DEFB130BP0DP73 79 aa15.41■□□□□ 0.06
CLN3-207ENST00000395653 DEFB130AP0DP74 79 aa15.41■□□□□ 0.06
CLN3-207ENST00000395653 C11orf72Q8NBR9 251 aa15.41■□□□□ 0.06
CLN3-207ENST00000395653 TCEAL7Q9BRU2 100 aa15.41■□□□□ 0.06
CLN3-207ENST00000395653 PEX7O00628 323 aa15.4■□□□□ 0.06
CLN3-207ENST00000395653 SULT1A2P50226 295 aa15.4■□□□□ 0.06
CLN3-207ENST00000395653 DAZ2Q13117 558 aaKnown RBP15.4■□□□□ 0.06
CLN3-207ENST00000395653 IBA57Q5T440 356 aaKnown RBP15.4■□□□□ 0.06
CLN3-207ENST00000395653 IGHV4-4A0A075B6R2 117 aa15.39■□□□□ 0.05
CLN3-207ENST00000395653 F6UZH7 168 aa15.39■□□□□ 0.05
CLN3-207ENST00000395653 PPT1P50897 306 aa15.39■□□□□ 0.05
CLN3-207ENST00000395653 CST9LP1Q5W188 147 aa15.39■□□□□ 0.05
CLN3-207ENST00000395653 LINC00612Q8N6U2 182 aa15.39■□□□□ 0.05
CLN3-207ENST00000395653 LINC00476Q8WZB0 136 aa15.39■□□□□ 0.05
CLN3-207ENST00000395653 ALMS1Q8TCU4 4167 aa15.38■□□□□ 0.05
CLN3-207ENST00000395653 TRAV21A0A0B4J279 112 aa15.38■□□□□ 0.05
CLN3-207ENST00000395653 A0A1B0GV50 99 aa15.38■□□□□ 0.05
CLN3-207ENST00000395653 SAPCD1Q5SSQ6 148 aa15.38■□□□□ 0.05
CLN3-207ENST00000395653 PRNTQ86SH4 94 aa15.38■□□□□ 0.05
CLN3-207ENST00000395653 FAM210BQ96KR6 192 aa15.38■□□□□ 0.05
CLN3-207ENST00000395653 GSN-AS1Q9NRJ2 163 aa15.38■□□□□ 0.05
CLN3-207ENST00000395653 APLNQ9ULZ1 77 aa15.38■□□□□ 0.05
CLN3-207ENST00000395653 TRAV1-1A0A0B4J248 108 aa15.37■□□□□ 0.05
CLN3-207ENST00000395653 PAGE4O60829 102 aa15.37■□□□□ 0.05
CLN3-207ENST00000395653 TCL1AP56279 114 aa15.37■□□□□ 0.05
CLN3-207ENST00000395653 MUC21Q5SSG8 566 aa15.37■□□□□ 0.05
CLN3-207ENST00000395653 FAM159AQ6UWV7 190 aa15.37■□□□□ 0.05
CLN3-207ENST00000395653 LINC00479Q96M42 142 aa15.37■□□□□ 0.05
CLN3-207ENST00000395653 TP53TG3Q9ULZ0 132 aa15.37■□□□□ 0.05
CLN3-207ENST00000395653 ATP5G3P48201 142 aa15.36■□□□□ 0.05
CLN3-207ENST00000395653 TDRG1Q3Y452 100 aa15.36■□□□□ 0.05
CLN3-207ENST00000395653 C8orf49Q96NF6 230 aa15.36■□□□□ 0.05
CLN3-207ENST00000395653 RYR2Q92736 4967 aa15.36■□□□□ 0.05
CLN3-207ENST00000395653 DNAH1Q9P2D7 4330 aa15.35■□□□□ 0.05
CLN3-207ENST00000395653 TRAV34A0A0B4J273 112 aa15.35■□□□□ 0.05
CLN3-207ENST00000395653 TEX46H3BTG2 121 aa15.35■□□□□ 0.05
CLN3-207ENST00000395653 ATP5G1P05496 136 aa15.35■□□□□ 0.05
CLN3-207ENST00000395653 HTN3P15516 51 aa15.35■□□□□ 0.05
CLN3-207ENST00000395653 SMUG1Q53HV7 270 aa15.35■□□□□ 0.05
CLN3-207ENST00000395653 NDUFAF3Q9BU61 184 aa15.35■□□□□ 0.05
CLN3-207ENST00000395653 ZNF415Q09FC8 603 aa15.34■□□□□ 0.05
CLN3-207ENST00000395653 Q86TA4 180 aa15.34■□□□□ 0.05
CLN3-207ENST00000395653 TRGV11A0A075B6L2 103 aa15.34■□□□□ 0.05
CLN3-207ENST00000395653 GCGP01275 180 aa15.34■□□□□ 0.05
CLN3-207ENST00000395653 LGALS9CQ6DKI2 356 aa15.34■□□□□ 0.05
CLN3-207ENST00000395653 FMC1Q96HJ9 113 aa15.34■□□□□ 0.05
CLN3-207ENST00000395653 MANBALQ9NQG1 85 aa15.34■□□□□ 0.05
CLN3-207ENST00000395653 NAGKQ9UJ70 344 aa15.34■□□□□ 0.05
CLN3-207ENST00000395653 KLF12Q9Y4X4 402 aa15.34■□□□□ 0.05
CLN3-207ENST00000395653 GAGE12BA1L429 117 aa15.33■□□□□ 0.04
CLN3-207ENST00000395653 GAGE7O76087 117 aa15.33■□□□□ 0.04
CLN3-207ENST00000395653 LY6G6CO95867 125 aa15.33■□□□□ 0.04
CLN3-207ENST00000395653 PFN1P07737 140 aaKnown RBP15.33■□□□□ 0.04
CLN3-207ENST00000395653 GAGE12FP0CL80 117 aa15.33■□□□□ 0.04
CLN3-207ENST00000395653 GAGE12GP0CL81 117 aa15.33■□□□□ 0.04
CLN3-207ENST00000395653 GAGE12IP0CL82 117 aa15.33■□□□□ 0.04
CLN3-207ENST00000395653 ZNF80P51504 273 aaPredicted RBP15.33■□□□□ 0.04
CLN3-207ENST00000395653 NKX2-5P52952 324 aaPredicted RBP15.33■□□□□ 0.04
CLN3-207ENST00000395653 UBE2G1P62253 170 aa15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms