RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 LINC00310P59036 64 aa7.73□□□□□ -1.17
VPS53-202ENST00000389040 SLAQ13239 276 aa7.73□□□□□ -1.17
VPS53-202ENST00000389040 C9orf66Q5T8R8 295 aa7.73□□□□□ -1.17
VPS53-202ENST00000389040 HIST2H2BDQ6DRA6 164 aa7.73□□□□□ -1.17
VPS53-202ENST00000389040 C16orf54Q6UWD8 224 aa7.73□□□□□ -1.17
VPS53-202ENST00000389040 TCF24Q7RTU0 167 aa7.73□□□□□ -1.17
VPS53-202ENST00000389040 ARL6IP6Q8N6S5 226 aa7.73□□□□□ -1.17
VPS53-202ENST00000389040 OR9G4Q8NGQ1 327 aa7.73□□□□□ -1.17
VPS53-202ENST00000389040 DLX4Q92988 240 aaPredicted RBP7.73□□□□□ -1.17
VPS53-202ENST00000389040 A8MWP6 167 aa7.72□□□□□ -1.17
VPS53-202ENST00000389040 F2Z2F3 143 aa7.72□□□□□ -1.17
VPS53-202ENST00000389040 K7EMT4 169 aa7.72□□□□□ -1.17
VPS53-202ENST00000389040 BUB3O43684 328 aa7.72□□□□□ -1.17
VPS53-202ENST00000389040 SERF1AO75920 110 aa7.72□□□□□ -1.17
VPS53-202ENST00000389040 TRBV12-3P01733 135 aa7.72□□□□□ -1.17
VPS53-202ENST00000389040 GZMBP10144 247 aa7.72□□□□□ -1.17
VPS53-202ENST00000389040 PRB4P10163 310 aaPredicted RBP7.72□□□□□ -1.17
VPS53-202ENST00000389040 SRIP30626 198 aa7.72□□□□□ -1.17
VPS53-202ENST00000389040 KIAA1644Q3SXP7 199 aa7.72□□□□□ -1.17
VPS53-202ENST00000389040 OR10J3Q5JRS4 329 aa7.72□□□□□ -1.17
VPS53-202ENST00000389040 GDF5OSQ5U4N7 250 aa7.72□□□□□ -1.17
VPS53-202ENST00000389040 DUX3Q96PT4 197 aa7.72□□□□□ -1.17
VPS53-202ENST00000389040 UFC1Q9Y3C8 167 aa7.72□□□□□ -1.17
VPS53-202ENST00000389040 A0A087X0K7 114 aa7.72□□□□□ -1.17
VPS53-202ENST00000389040 ZNF785A8K8V0 405 aa7.72□□□□□ -1.17
VPS53-202ENST00000389040 CHEK1O14757 476 aa7.72□□□□□ -1.17
VPS53-202ENST00000389040 CAMPP49913 170 aa7.72□□□□□ -1.17
VPS53-202ENST00000389040 SLURP1P55000 103 aa7.72□□□□□ -1.17
VPS53-202ENST00000389040 PAFAH1B2P68402 229 aa7.72□□□□□ -1.17
VPS53-202ENST00000389040 RBPMS2Q6ZRY4 209 aaKnown RBP7.72□□□□□ -1.17
VPS53-202ENST00000389040 OR2D3Q8NGH3 330 aa7.72□□□□□ -1.17
VPS53-202ENST00000389040 METTL26Q96S19 204 aa7.72□□□□□ -1.17
VPS53-202ENST00000389040 ASCL2Q99929 193 aa7.72□□□□□ -1.17
VPS53-202ENST00000389040 TRRAPQ9Y4A5 3859 aa7.71□□□□□ -1.17
VPS53-202ENST00000389040 FBLL1A6NHQ2 334 aaKnown RBP7.71□□□□□ -1.18
VPS53-202ENST00000389040 SYNJ2BPP57105 145 aa7.71□□□□□ -1.18
VPS53-202ENST00000389040 HBBP68871 147 aa7.71□□□□□ -1.18
VPS53-202ENST00000389040 C1orf194Q5T5A4 169 aa7.71□□□□□ -1.18
VPS53-202ENST00000389040 PGLYRP4Q96LB8 373 aa7.71□□□□□ -1.18
VPS53-202ENST00000389040 IGKV2-40A0A087WW87 121 aaPredicted RBP7.7□□□□□ -1.18
VPS53-202ENST00000389040 LINC00587B1AMM8 73 aa7.7□□□□□ -1.18
VPS53-202ENST00000389040 IGKV2D-40P01614 121 aaPredicted RBP7.7□□□□□ -1.18
VPS53-202ENST00000389040 CT45A10P0DMU9 189 aa7.7□□□□□ -1.18
VPS53-202ENST00000389040 BMI1P35226 326 aa7.7□□□□□ -1.18
VPS53-202ENST00000389040 OR2K2Q8NGT1 345 aa7.7□□□□□ -1.18
VPS53-202ENST00000389040 DAZ1Q9NQZ3 744 aaKnown RBP7.7□□□□□ -1.18
VPS53-202ENST00000389040 VWFP04275 2813 aa7.7□□□□□ -1.18
VPS53-202ENST00000389040 IGHV3-66A0A0C4DH42 116 aa7.7□□□□□ -1.18
VPS53-202ENST00000389040 CRIP1P50238 77 aa7.7□□□□□ -1.18
VPS53-202ENST00000389040 FOXA3P55318 350 aaPredicted RBP7.7□□□□□ -1.18
VPS53-202ENST00000389040 SAPCD1Q5SSQ6 148 aa7.7□□□□□ -1.18
VPS53-202ENST00000389040 KPRPQ5T749 579 aaPredicted RBP7.7□□□□□ -1.18
VPS53-202ENST00000389040 SAMD5Q5TGI4 173 aa7.7□□□□□ -1.18
VPS53-202ENST00000389040 IGFL4Q6B9Z1 124 aa7.7□□□□□ -1.18
VPS53-202ENST00000389040 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa7.7□□□□□ -1.18
VPS53-202ENST00000389040 C8orf49Q96NF6 230 aa7.7□□□□□ -1.18
VPS53-202ENST00000389040 SSBP4Q9BWG4 385 aaPredicted RBP7.7□□□□□ -1.18
VPS53-202ENST00000389040 APOHP02749 345 aaPredicted RBP7.69□□□□□ -1.18
VPS53-202ENST00000389040 HLA-DMBP28068 263 aa7.69□□□□□ -1.18
VPS53-202ENST00000389040 EGFEM1PQ0D2K5 195 aa7.69□□□□□ -1.18
VPS53-202ENST00000389040 IQCJQ1A5X6 159 aa7.69□□□□□ -1.18
VPS53-202ENST00000389040 LCN12Q6JVE5 192 aa7.69□□□□□ -1.18
VPS53-202ENST00000389040 COX8CQ7Z4L0 72 aa7.69□□□□□ -1.18
VPS53-202ENST00000389040 KCNS1Q96KK3 526 aa7.69□□□□□ -1.18
VPS53-202ENST00000389040 RCHY1Q96PM5 261 aa7.69□□□□□ -1.18
VPS53-202ENST00000389040 SLC50A1Q9BRV3 221 aa7.69□□□□□ -1.18
VPS53-202ENST00000389040 SAMD10Q9BYL1 202 aa7.69□□□□□ -1.18
VPS53-202ENST00000389040 U3KQE9 123 aa7.69□□□□□ -1.18
VPS53-202ENST00000389040 IGHV3OR16-13A0A075B7E8 117 aa7.68□□□□□ -1.18
VPS53-202ENST00000389040 IGHV3-74A0A0B4J1X5 117 aa7.68□□□□□ -1.18
VPS53-202ENST00000389040 ZNF705FA8MVS1 300 aaPredicted RBP7.68□□□□□ -1.18
VPS53-202ENST00000389040 ZNF207O43670 478 aaKnown RBP7.68□□□□□ -1.18
VPS53-202ENST00000389040 CSN3P07498 182 aa7.68□□□□□ -1.18
VPS53-202ENST00000389040 IGLL1P15814 213 aa7.68□□□□□ -1.18
VPS53-202ENST00000389040 C18orf32Q8TCD1 76 aa7.68□□□□□ -1.18
VPS53-202ENST00000389040 PRR25Q96S07 402 aa7.68□□□□□ -1.18
VPS53-202ENST00000389040 VGLL1Q99990 258 aa7.68□□□□□ -1.18
VPS53-202ENST00000389040 IGHV3-49A0A0A0MS15 119 aa7.68□□□□□ -1.18
VPS53-202ENST00000389040 C2orf70A6NJV1 201 aa7.68□□□□□ -1.18
VPS53-202ENST00000389040 J3QL48 77 aa7.68□□□□□ -1.18
VPS53-202ENST00000389040 SAP30O75446 220 aa7.68□□□□□ -1.18
VPS53-202ENST00000389040 SCGB1D1O95968 90 aa7.68□□□□□ -1.18
VPS53-202ENST00000389040 IGLV1-51P01701 117 aa7.68□□□□□ -1.18
VPS53-202ENST00000389040 FAM162BQ5T6X4 162 aa7.68□□□□□ -1.18
VPS53-202ENST00000389040 Q6ZWC4 215 aa7.68□□□□□ -1.18
VPS53-202ENST00000389040 Q8TAT8 98 aa7.68□□□□□ -1.18
VPS53-202ENST00000389040 ALKBH7Q9BT30 221 aaPredicted RBP7.68□□□□□ -1.18
VPS53-202ENST00000389040 TRAV25A0A0B4J276 109 aa7.67□□□□□ -1.18
VPS53-202ENST00000389040 A0A1W2PS18 150 aa7.67□□□□□ -1.18
VPS53-202ENST00000389040 TMEM213A2RRL7 107 aa7.67□□□□□ -1.18
VPS53-202ENST00000389040 SH2D1AO60880 128 aa7.67□□□□□ -1.18
VPS53-202ENST00000389040 GPX1P07203 203 aa7.67□□□□□ -1.18
VPS53-202ENST00000389040 PKIAP61925 76 aa7.67□□□□□ -1.18
VPS53-202ENST00000389040 Q6AWC8 147 aa7.67□□□□□ -1.18
VPS53-202ENST00000389040 UNQ9165/PRO28630Q6UXU0 137 aa7.67□□□□□ -1.18
VPS53-202ENST00000389040 RNF182Q8N6D2 247 aa7.67□□□□□ -1.18
VPS53-202ENST00000389040 PKD1L1Q8TDX9 2849 aa7.67□□□□□ -1.18
VPS53-202ENST00000389040 A0A1B0GUT8 65 aa7.66□□□□□ -1.18
VPS53-202ENST00000389040 RBAKDNA6NC62 111 aa7.66□□□□□ -1.18
VPS53-202ENST00000389040 PRAC2D3DTV9 90 aa7.66□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 87.1 ms