RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 RAB2AP61019 212 aa15.05■□□□□ -0
CCDC28B-201ENST00000373602 PQLC2Q6ZP29 291 aa15.05■□□□□ -0
CCDC28B-201ENST00000373602 VSIG2Q96IQ7 327 aa15.05■□□□□ -0
CCDC28B-201ENST00000373602 ARPC5LQ9BPX5 153 aa15.05■□□□□ -0
CCDC28B-201ENST00000373602 LENEPQ9Y5L5 61 aa15.05■□□□□ -0
CCDC28B-201ENST00000373602 ESRGQ1W209 222 aa15.04■□□□□ -0
CCDC28B-201ENST00000373602 TMED6Q8WW62 240 aa15.04■□□□□ -0
CCDC28B-201ENST00000373602 Q9H8V8 135 aa15.04■□□□□ -0
CCDC28B-201ENST00000373602 DYNC1H1Q14204 4646 aaKnown RBP15.04■□□□□ -0
CCDC28B-201ENST00000373602 PKD1P98161 4303 aa15.04■□□□□ -0
CCDC28B-201ENST00000373602 PGPA6NDG6 321 aa15.03■□□□□ -0
CCDC28B-201ENST00000373602 C6orf223Q8N319 242 aa15.03■□□□□ -0
CCDC28B-201ENST00000373602 ST6GAL2Q96JF0 529 aa15.03■□□□□ -0
CCDC28B-201ENST00000373602 HYLS1Q96M11 299 aa15.03■□□□□ -0
CCDC28B-201ENST00000373602 UPK3BQ9BT76 320 aa15.03■□□□□ -0
CCDC28B-201ENST00000373602 MED28Q9H204 178 aa15.03■□□□□ -0
CCDC28B-201ENST00000373602 KIAA1109Q2LD37 5005 aa15.02■□□□□ -0
CCDC28B-201ENST00000373602 ZNF415Q09FC8 603 aa15.02■□□□□ -0
CCDC28B-201ENST00000373602 FAM74A1Q5RGS3 127 aa15.02■□□□□ -0
CCDC28B-201ENST00000373602 Q6AWC8 147 aa15.02■□□□□ -0
CCDC28B-201ENST00000373602 OR10G4Q8NGN3 311 aa15.02■□□□□ -0
CCDC28B-201ENST00000373602 OR10G9Q8NGN4 311 aa15.02■□□□□ -0
CCDC28B-201ENST00000373602 OR10G7Q8NGN6 311 aa15.02■□□□□ -0
CCDC28B-201ENST00000373602 CMTM2Q8TAZ6 248 aa15.02■□□□□ -0
CCDC28B-201ENST00000373602 AQP10Q96PS8 301 aa15.02■□□□□ -0
CCDC28B-201ENST00000373602 MRPL16Q9NX20 251 aaKnown RBP15.02■□□□□ -0
CCDC28B-201ENST00000373602 MUC4Q99102 2169 aa15.01□□□□□ -0.01
CCDC28B-201ENST00000373602 PKHD1P08F94 4074 aa15.01□□□□□ -0.01
CCDC28B-201ENST00000373602 A0A096LPF7 62 aa15.01□□□□□ -0.01
CCDC28B-201ENST00000373602 MUC21Q5SSG8 566 aa15.01□□□□□ -0.01
CCDC28B-201ENST00000373602 ARL6IP6Q8N6S5 226 aa15.01□□□□□ -0.01
CCDC28B-201ENST00000373602 OR2G3Q8NGZ4 309 aa15.01□□□□□ -0.01
CCDC28B-201ENST00000373602 MRPS16Q9Y3D3 137 aaKnown RBP15.01□□□□□ -0.01
CCDC28B-201ENST00000373602 MED14OSP0DP75 135 aa15□□□□□ -0.01
CCDC28B-201ENST00000373602 HSD17B11Q8NBQ5 300 aa15□□□□□ -0.01
CCDC28B-201ENST00000373602 PSMG3Q9BT73 122 aaPredicted RBP15□□□□□ -0.01
CCDC28B-201ENST00000373602 HMGB3O15347 200 aaKnown RBP14.99□□□□□ -0.01
CCDC28B-201ENST00000373602 TNP2Q05952 138 aa14.99□□□□□ -0.01
CCDC28B-201ENST00000373602 MDFICQ9P1T7 246 aa14.99□□□□□ -0.01
CCDC28B-201ENST00000373602 RPH3ALQ9UNE2 315 aa14.99□□□□□ -0.01
CCDC28B-201ENST00000373602 IGHV3-53P01767 116 aa14.98□□□□□ -0.01
CCDC28B-201ENST00000373602 STAG3L2P0CL84 134 aa14.98□□□□□ -0.01
CCDC28B-201ENST00000373602 STAG3L3P0CL85 134 aa14.98□□□□□ -0.01
CCDC28B-201ENST00000373602 CDC34P49427 236 aaPredicted RBP14.98□□□□□ -0.01
CCDC28B-201ENST00000373602 Q5BKY6 102 aa14.98□□□□□ -0.01
CCDC28B-201ENST00000373602 FAM159AQ6UWV7 190 aa14.98□□□□□ -0.01
CCDC28B-201ENST00000373602 GOLT1AQ6ZVE7 132 aa14.98□□□□□ -0.01
CCDC28B-201ENST00000373602 PAX4O43316 350 aa14.97□□□□□ -0.01
CCDC28B-201ENST00000373602 ARL14EPLP0DKL9 152 aa14.97□□□□□ -0.01
CCDC28B-201ENST00000373602 ATP6V0CP27449 155 aa14.97□□□□□ -0.01
CCDC28B-201ENST00000373602 TTC32Q5I0X7 151 aa14.97□□□□□ -0.01
CCDC28B-201ENST00000373602 ASB13Q8WXK3 278 aa14.97□□□□□ -0.01
CCDC28B-201ENST00000373602 KRTAP1-5Q9BYS1 174 aa14.97□□□□□ -0.01
CCDC28B-201ENST00000373602 TRGV11A0A075B6L2 103 aa14.96□□□□□ -0.01
CCDC28B-201ENST00000373602 GIPP09681 153 aaPredicted RBP14.96□□□□□ -0.01
CCDC28B-201ENST00000373602 SLAQ13239 276 aa14.96□□□□□ -0.01
CCDC28B-201ENST00000373602 FHL2Q14192 279 aa14.96□□□□□ -0.01
CCDC28B-201ENST00000373602 TMEM183BQ1AE95 376 aa14.96□□□□□ -0.01
CCDC28B-201ENST00000373602 TDRG1Q3Y452 100 aa14.96□□□□□ -0.01
CCDC28B-201ENST00000373602 TMEM183AQ8IXX5 376 aa14.96□□□□□ -0.01
CCDC28B-201ENST00000373602 RAB24Q969Q5 203 aa14.96□□□□□ -0.01
CCDC28B-201ENST00000373602 SPXQ9BT56 116 aa14.96□□□□□ -0.01
CCDC28B-201ENST00000373602 PRO0255Q9UI72 69 aa14.96□□□□□ -0.01
CCDC28B-201ENST00000373602 TRAV8-1A0A0A6YYK1 113 aa14.95□□□□□ -0.02
CCDC28B-201ENST00000373602 A0A1W2PPQ1 181 aa14.95□□□□□ -0.02
CCDC28B-201ENST00000373602 MBP02144 154 aa14.95□□□□□ -0.02
CCDC28B-201ENST00000373602 GNG5P63218 68 aa14.95□□□□□ -0.02
CCDC28B-201ENST00000373602 SERF2P84101 59 aa14.95□□□□□ -0.02
CCDC28B-201ENST00000373602 ZNF575Q86XF7 245 aa14.95□□□□□ -0.02
CCDC28B-201ENST00000373602 SUN5Q8TC36 379 aa14.95□□□□□ -0.02
CCDC28B-201ENST00000373602 RASL10AQ92737 203 aa14.95□□□□□ -0.02
CCDC28B-201ENST00000373602 TVP23CQ96ET8 276 aa14.95□□□□□ -0.02
CCDC28B-201ENST00000373602 ICOSQ9Y6W8 199 aa14.95□□□□□ -0.02
CCDC28B-201ENST00000373602 CRYBA4P53673 196 aa14.94□□□□□ -0.02
CCDC28B-201ENST00000373602 TREM1Q9NP99 234 aa14.94□□□□□ -0.02
CCDC28B-201ENST00000373602 NAGKQ9UJ70 344 aa14.94□□□□□ -0.02
CCDC28B-201ENST00000373602 HHLA3Q9XRX5 114 aa14.94□□□□□ -0.02
CCDC28B-201ENST00000373602 TRAV21A0A0B4J279 112 aa14.93□□□□□ -0.02
CCDC28B-201ENST00000373602 GCHFRP30047 84 aa14.93□□□□□ -0.02
CCDC28B-201ENST00000373602 C8orf49Q96NF6 230 aa14.93□□□□□ -0.02
CCDC28B-201ENST00000373602 KRTAP17-1Q9BYP8 105 aa14.93□□□□□ -0.02
CCDC28B-201ENST00000373602 SERTM2A0A1B0GWG4 89 aa14.92□□□□□ -0.02
CCDC28B-201ENST00000373602 RNF222A6NCQ9 220 aa14.92□□□□□ -0.02
CCDC28B-201ENST00000373602 F6UZH7 168 aa14.92□□□□□ -0.02
CCDC28B-201ENST00000373602 IQCF2Q8IXL9 164 aa14.92□□□□□ -0.02
CCDC28B-201ENST00000373602 C5orf17Q8NAS9 161 aa14.92□□□□□ -0.02
CCDC28B-201ENST00000373602 INO80EQ8NBZ0 244 aaPredicted RBP14.92□□□□□ -0.02
CCDC28B-201ENST00000373602 SH3BGRL3Q9H299 93 aa14.92□□□□□ -0.02
CCDC28B-201ENST00000373602 TNFSF18Q9UNG2 199 aa14.92□□□□□ -0.02
CCDC28B-201ENST00000373602 GNRH2O43555 120 aa14.91□□□□□ -0.02
CCDC28B-201ENST00000373602 TCRAP04437 139 aa14.91□□□□□ -0.02
CCDC28B-201ENST00000373602 BTF3P20290 206 aaKnown RBP14.91□□□□□ -0.02
CCDC28B-201ENST00000373602 ZNF479Q96JC4 524 aa14.91□□□□□ -0.02
CCDC28B-201ENST00000373602 TRGV4A0A0C4DH28 118 aa14.9□□□□□ -0.02
CCDC28B-201ENST00000373602 IGHV3-16A0A0C4DH30 117 aa14.9□□□□□ -0.02
CCDC28B-201ENST00000373602 SFTA3P0C7M3 94 aa14.9□□□□□ -0.02
CCDC28B-201ENST00000373602 MRPL23Q16540 153 aaKnown RBP14.9□□□□□ -0.02
CCDC28B-201ENST00000373602 RPL7L1Q6DKI1 246 aaKnown RBP14.9□□□□□ -0.02
CCDC28B-201ENST00000373602 SGK494Q96LW2 274 aa14.9□□□□□ -0.02
CCDC28B-201ENST00000373602 ACTR3CQ9C0K3 210 aaPredicted RBP14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms