RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 FAM162BQ5T6X4 162 aa13.8□□□□□ -0.2
CLN3-206ENST00000360019 APRG1Q8IVJ8 170 aa13.8□□□□□ -0.2
CLN3-206ENST00000360019 WFDC9Q8NEX5 89 aa13.8□□□□□ -0.2
CLN3-206ENST00000360019 DAZAP1Q96EP5 407 aaKnown RBP13.8□□□□□ -0.2
CLN3-206ENST00000360019 COLCA2A8K830 154 aa13.8□□□□□ -0.2
CLN3-206ENST00000360019 INSL3P51460 131 aa13.8□□□□□ -0.2
CLN3-206ENST00000360019 ACTL10Q5JWF8 245 aa13.8□□□□□ -0.2
CLN3-206ENST00000360019 C9orf66Q5T8R8 295 aa13.8□□□□□ -0.2
CLN3-206ENST00000360019 RPP21Q9H633 154 aaKnown RBP13.8□□□□□ -0.2
CLN3-206ENST00000360019 IL36BQ9NZH7 164 aa13.8□□□□□ -0.2
CLN3-206ENST00000360019 TRBV7-9A0A0J9YWB2 115 aa13.79□□□□□ -0.2
CLN3-206ENST00000360019 J3KRW8 73 aa13.79□□□□□ -0.2
CLN3-206ENST00000360019 IGKV3-20P01619 116 aa13.79□□□□□ -0.2
CLN3-206ENST00000360019 HLA-DRB4P13762 266 aa13.79□□□□□ -0.2
CLN3-206ENST00000360019 CRISP2P16562 243 aa13.79□□□□□ -0.2
CLN3-206ENST00000360019 KIR3DS1Q14943 382 aa13.79□□□□□ -0.2
CLN3-206ENST00000360019 BEAN1Q3B7T3 259 aa13.79□□□□□ -0.2
CLN3-206ENST00000360019 OR4B1Q8NGF8 309 aa13.79□□□□□ -0.2
CLN3-206ENST00000360019 IMMP2LQ96T52 175 aa13.79□□□□□ -0.2
CLN3-206ENST00000360019 HLA-DRB4X5D2U9 266 aa13.79□□□□□ -0.2
CLN3-206ENST00000360019 TGIF2-C20orf24A0A0A6YYL0 155 aa13.78□□□□□ -0.2
CLN3-206ENST00000360019 DUSP14O95147 198 aaKnown RBP13.78□□□□□ -0.2
CLN3-206ENST00000360019 FAM3BP58499 235 aaPredicted RBP13.78□□□□□ -0.2
CLN3-206ENST00000360019 RPL19P84098 196 aaKnown RBP13.78□□□□□ -0.2
CLN3-206ENST00000360019 CXCL1P09341 107 aa13.78□□□□□ -0.2
CLN3-206ENST00000360019 CD7P09564 240 aa13.78□□□□□ -0.2
CLN3-206ENST00000360019 Q6ZQT7 251 aa13.78□□□□□ -0.2
CLN3-206ENST00000360019 ODF3Q96PU9 254 aa13.78□□□□□ -0.2
CLN3-206ENST00000360019 FABP5P3A8MUU1 101 aa13.77□□□□□ -0.21
CLN3-206ENST00000360019 H3BMM0 161 aa13.77□□□□□ -0.21
CLN3-206ENST00000360019 S100PP25815 95 aa13.77□□□□□ -0.21
CLN3-206ENST00000360019 CT83Q5H943 113 aa13.77□□□□□ -0.21
CLN3-206ENST00000360019 AMTNQ6UX39 209 aa13.77□□□□□ -0.21
CLN3-206ENST00000360019 OR2D3Q8NGH3 330 aa13.77□□□□□ -0.21
CLN3-206ENST00000360019 PKD1L1Q8TDX9 2849 aa13.77□□□□□ -0.21
CLN3-206ENST00000360019 SMIM27A0A1W2PRY6 76 aa13.76□□□□□ -0.21
CLN3-206ENST00000360019 KLLNB2CW77 178 aa13.76□□□□□ -0.21
CLN3-206ENST00000360019 OR11H12B2RN74 326 aa13.76□□□□□ -0.21
CLN3-206ENST00000360019 TCL1AP56279 114 aa13.76□□□□□ -0.21
CLN3-206ENST00000360019 KCNIP4Q6PIL6 250 aa13.76□□□□□ -0.21
CLN3-206ENST00000360019 A0A1W2PPQ1 181 aa13.76□□□□□ -0.21
CLN3-206ENST00000360019 RBMY1BA6NDE4 496 aaKnown RBP13.76□□□□□ -0.21
CLN3-206ENST00000360019 RBMY1EA6NEQ0 496 aaKnown RBP13.76□□□□□ -0.21
CLN3-206ENST00000360019 A8MTW9 85 aa13.76□□□□□ -0.21
CLN3-206ENST00000360019 GPX1P07203 203 aa13.76□□□□□ -0.21
CLN3-206ENST00000360019 RBMY1DP0C7P1 496 aaKnown RBP13.76□□□□□ -0.21
CLN3-206ENST00000360019 IGLL1P15814 213 aa13.76□□□□□ -0.21
CLN3-206ENST00000360019 TSKUQ8WUA8 353 aa13.76□□□□□ -0.21
CLN3-206ENST00000360019 MCRIP2Q9BUT9 160 aaKnown RBP13.76□□□□□ -0.21
CLN3-206ENST00000360019 C19orf73Q9NVV2 129 aa13.76□□□□□ -0.21
CLN3-206ENST00000360019 TRBV24-1A0A075B6N3 115 aa13.75□□□□□ -0.21
CLN3-206ENST00000360019 GZMBP10144 247 aa13.75□□□□□ -0.21
CLN3-206ENST00000360019 PYGO2Q9BRQ0 406 aa13.75□□□□□ -0.21
CLN3-206ENST00000360019 C11orf21Q9P2W6 132 aa13.75□□□□□ -0.21
CLN3-206ENST00000360019 M0R2Z0 102 aa13.74□□□□□ -0.21
CLN3-206ENST00000360019 RNASE4P34096 147 aaKnown RBP13.74□□□□□ -0.21
CLN3-206ENST00000360019 ZNF575Q86XF7 245 aa13.74□□□□□ -0.21
CLN3-206ENST00000360019 GTSF1Q8WW33 167 aa13.74□□□□□ -0.21
CLN3-206ENST00000360019 NEU1Q99519 415 aa13.74□□□□□ -0.21
CLN3-206ENST00000360019 A8MWL6 223 aa13.74□□□□□ -0.21
CLN3-206ENST00000360019 LEPP41159 167 aa13.74□□□□□ -0.21
CLN3-206ENST00000360019 SPINK13Q1W4C9 94 aa13.74□□□□□ -0.21
CLN3-206ENST00000360019 Q6AWC8 147 aa13.74□□□□□ -0.21
CLN3-206ENST00000360019 FAM110AQ9BQ89 295 aa13.74□□□□□ -0.21
CLN3-206ENST00000360019 WFDC10AQ9H1F0 79 aa13.74□□□□□ -0.21
CLN3-206ENST00000360019 TMSB15BA0A087X1C1 80 aa13.73□□□□□ -0.21
CLN3-206ENST00000360019 TMEM189A5PLL7 270 aa13.73□□□□□ -0.21
CLN3-206ENST00000360019 CMC4P56277 68 aaPredicted RBP13.73□□□□□ -0.21
CLN3-206ENST00000360019 LINC01559Q495D7 138 aa13.73□□□□□ -0.21
CLN3-206ENST00000360019 DNAH3Q8TD57 4116 aa13.73□□□□□ -0.21
CLN3-206ENST00000360019 TRAV12-2A0A075B6T6 113 aa13.72□□□□□ -0.21
CLN3-206ENST00000360019 IGKV3D-20A0A0C4DH25 116 aa13.72□□□□□ -0.21
CLN3-206ENST00000360019 HIGD1CA8MV81 97 aa13.72□□□□□ -0.21
CLN3-206ENST00000360019 ORM1P02763 201 aa13.72□□□□□ -0.21
CLN3-206ENST00000360019 CDKN1BP46527 198 aa13.72□□□□□ -0.21
CLN3-206ENST00000360019 GFI1BQ5VTD9 330 aa13.72□□□□□ -0.21
CLN3-206ENST00000360019 NUP35Q8NFH5 326 aa13.72□□□□□ -0.21
CLN3-206ENST00000360019 FAM210BQ96KR6 192 aa13.72□□□□□ -0.21
CLN3-206ENST00000360019 TRAV21A0A0B4J279 112 aa13.71□□□□□ -0.21
CLN3-206ENST00000360019 WIPF1O43516 503 aa13.71□□□□□ -0.21
CLN3-206ENST00000360019 RAB5AP20339 215 aa13.71□□□□□ -0.21
CLN3-206ENST00000360019 NAT8BQ9UHF3 227 aa13.71□□□□□ -0.21
CLN3-206ENST00000360019 FXYD7P58549 80 aa13.71□□□□□ -0.22
CLN3-206ENST00000360019 GFRA4Q9GZZ7 299 aa13.71□□□□□ -0.22
CLN3-206ENST00000360019 TRAV9-1A0A075B6T8 112 aa13.7□□□□□ -0.22
CLN3-206ENST00000360019 C7orf71A4D174 169 aa13.7□□□□□ -0.22
CLN3-206ENST00000360019 FAM231BA6NCW3 169 aa13.7□□□□□ -0.22
CLN3-206ENST00000360019 TSPOP30536 169 aa13.7□□□□□ -0.22
CLN3-206ENST00000360019 TRPT1Q86TN4 253 aaKnown RBP13.7□□□□□ -0.22
CLN3-206ENST00000360019 STHQ8IWL8 128 aa13.7□□□□□ -0.22
CLN3-206ENST00000360019 BTF3L4Q96K17 158 aa13.7□□□□□ -0.22
CLN3-206ENST00000360019 CLUHP3Q96NS8 147 aa13.7□□□□□ -0.22
CLN3-206ENST00000360019 MDFIQ99750 246 aa13.7□□□□□ -0.22
CLN3-206ENST00000360019 CRXO43186 299 aaPredicted RBP13.69□□□□□ -0.22
CLN3-206ENST00000360019 SPINK4O60575 86 aa13.69□□□□□ -0.22
CLN3-206ENST00000360019 ZNF324O75467 553 aaPredicted RBP13.69□□□□□ -0.22
CLN3-206ENST00000360019 TRAV12-3A0A0B4J271 114 aa13.69□□□□□ -0.22
CLN3-206ENST00000360019 FOXA3P55318 350 aaPredicted RBP13.69□□□□□ -0.22
CLN3-206ENST00000360019 XKRY2A2RUG3 117 aa13.68□□□□□ -0.22
CLN3-206ENST00000360019 FRMD6-AS1P0C7T7 363 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 138 ms