RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 IGLC1P0CG04 106 aa9.19□□□□□ -0.94
VPS39-201ENST00000318006 TRPT1Q86TN4 253 aaKnown RBP9.19□□□□□ -0.94
VPS39-201ENST00000318006 OBSL1O75147 1896 aa9.19□□□□□ -0.94
VPS39-201ENST00000318006 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.19□□□□□ -0.941e-6■■■□□ 19.2
VPS39-201ENST00000318006 TAX1BP3O14907 124 aa9.19□□□□□ -0.94
VPS39-201ENST00000318006 NDPQ00604 133 aa9.19□□□□□ -0.94
VPS39-201ENST00000318006 ANKRD29Q8N6D5 301 aa9.19□□□□□ -0.94
VPS39-201ENST00000318006 C1orf159Q96HA4 380 aa9.19□□□□□ -0.94
VPS39-201ENST00000318006 CARD19Q96LW7 228 aa9.19□□□□□ -0.94
VPS39-201ENST00000318006 PRR25Q96S07 402 aa9.19□□□□□ -0.94
VPS39-201ENST00000318006 A0A087WX48 190 aa9.19□□□□□ -0.94
VPS39-201ENST00000318006 IGLL5B9A064 214 aa9.19□□□□□ -0.94
VPS39-201ENST00000318006 FXYD5Q96DB9 178 aa9.19□□□□□ -0.94
VPS39-201ENST00000318006 B4DSR2 109 aa9.18□□□□□ -0.94
VPS39-201ENST00000318006 SMIM2Q9BVW6 85 aa9.18□□□□□ -0.94
VPS39-201ENST00000318006 SCRT2Q9NQ03 307 aa9.18□□□□□ -0.94
VPS39-201ENST00000318006 IL17RELQ6ZVW7 336 aa9.18□□□□□ -0.94
VPS39-201ENST00000318006 MED13LQ71F56 2210 aa9.18□□□□□ -0.94
VPS39-201ENST00000318006 DKK1O94907 266 aa9.18□□□□□ -0.94
VPS39-201ENST00000318006 ZNF415Q09FC8 603 aa9.18□□□□□ -0.94
VPS39-201ENST00000318006 ZC2HC1AQ96GY0 325 aa9.18□□□□□ -0.94
VPS39-201ENST00000318006 ZNRD1Q9P1U0 126 aa9.18□□□□□ -0.94
VPS39-201ENST00000318006 FOXI2Q6ZQN5 318 aa9.17□□□□□ -0.94
VPS39-201ENST00000318006 FAM215AQ9Y5M1 114 aa9.17□□□□□ -0.94
VPS39-201ENST00000318006 IGHG4P01861 327 aa9.17□□□□□ -0.94
VPS39-201ENST00000318006 GTF3C1Q12789 2109 aa9.17□□□□□ -0.94
VPS39-201ENST00000318006 LINC01545Q5VT33 79 aa9.17□□□□□ -0.94
VPS39-201ENST00000318006 TRAV13-1A0A0B4J241 112 aa9.17□□□□□ -0.94
VPS39-201ENST00000318006 C6orf226Q5I0X4 101 aa9.17□□□□□ -0.94
VPS39-201ENST00000318006 BRD3OSQ6XYD6 125 aa9.17□□□□□ -0.94
VPS39-201ENST00000318006 A0A1W2PRX2 142 aa9.17□□□□□ -0.94
VPS39-201ENST00000318006 H3BUX3 64 aa9.17□□□□□ -0.94
VPS39-201ENST00000318006 NDUFB8O95169 186 aa9.17□□□□□ -0.94
VPS39-201ENST00000318006 LTAP01374 205 aa9.17□□□□□ -0.94
VPS39-201ENST00000318006 ASPHD1Q5U4P2 390 aa9.17□□□□□ -0.94
VPS39-201ENST00000318006 DTX2Q86UW9 622 aa9.17□□□□□ -0.94
VPS39-201ENST00000318006 BPESC1Q9GZL8 116 aa9.17□□□□□ -0.94
VPS39-201ENST00000318006 TRBV25-1A0A075B6N4 114 aa9.16□□□□□ -0.94
VPS39-201ENST00000318006 ANXA2RQ3ZCQ2 193 aa9.16□□□□□ -0.94
VPS39-201ENST00000318006 IGLV3-9A0A075B6K5 115 aa9.16□□□□□ -0.94
VPS39-201ENST00000318006 J3QQQ9 107 aa9.16□□□□□ -0.94
VPS39-201ENST00000318006 UBL5Q9BZL1 73 aa9.16□□□□□ -0.94
VPS39-201ENST00000318006 TMEM126AQ9H061 195 aa9.16□□□□□ -0.94
VPS39-201ENST00000318006 SHANK1Q9Y566 2161 aa9.16□□□□□ -0.94
VPS39-201ENST00000318006 DOCK10Q96BY6 2186 aa9.16□□□□□ -0.94
VPS39-201ENST00000318006 CFC1BP0CG36 223 aa9.16□□□□□ -0.94
VPS39-201ENST00000318006 CFC1P0CG37 223 aa9.16□□□□□ -0.94
VPS39-201ENST00000318006 ANKRD39Q53RE8 183 aa9.16□□□□□ -0.94
VPS39-201ENST00000318006 NDUFA12Q9UI09 145 aa9.16□□□□□ -0.94
VPS39-201ENST00000318006 TRAV26-2A0A0B4J265 109 aa9.15□□□□□ -0.94
VPS39-201ENST00000318006 G3V4G9 280 aa9.15□□□□□ -0.94
VPS39-201ENST00000318006 SDHAF1A6NFY7 115 aa9.15□□□□□ -0.94
VPS39-201ENST00000318006 C17orf58Q2M2W7 97 aa9.15□□□□□ -0.94
VPS39-201ENST00000318006 THAP8Q8NA92 274 aa9.15□□□□□ -0.94
VPS39-201ENST00000318006 YLPM1P49750 1951 aaKnown RBP9.15□□□□□ -0.95
VPS39-201ENST00000318006 H3BRN7 92 aa9.15□□□□□ -0.95
VPS39-201ENST00000318006 K7EM74 188 aa9.15□□□□□ -0.95
VPS39-201ENST00000318006 FAM120AOSQ5T036 256 aa9.15□□□□□ -0.95
VPS39-201ENST00000318006 DUX4L9Q6RFH8 374 aaPredicted RBP9.15□□□□□ -0.95
VPS39-201ENST00000318006 C8orf86Q6ZUL3 223 aa9.15□□□□□ -0.95
VPS39-201ENST00000318006 Q8NFD4 153 aa9.15□□□□□ -0.95
VPS39-201ENST00000318006 COL4A4P53420 1690 aaPredicted RBP9.14□□□□□ -0.95
VPS39-201ENST00000318006 SAA4P35542 130 aa9.14□□□□□ -0.95
VPS39-201ENST00000318006 WT1-ASQ06250 92 aa9.14□□□□□ -0.95
VPS39-201ENST00000318006 RNF166Q96A37 237 aaPredicted RBP9.14□□□□□ -0.95
VPS39-201ENST00000318006 DPH3Q96FX2 82 aa9.14□□□□□ -0.95
VPS39-201ENST00000318006 SHISA9B4DS77 424 aa9.14□□□□□ -0.95
VPS39-201ENST00000318006 C15orf65H3BRN8 121 aa9.14□□□□□ -0.95
VPS39-201ENST00000318006 TEX36Q5VZQ5 186 aa9.14□□□□□ -0.95
VPS39-201ENST00000318006 LINC00173Q6ZV60 143 aa9.14□□□□□ -0.95
VPS39-201ENST00000318006 C20orf78Q9BR46 151 aa9.14□□□□□ -0.95
VPS39-201ENST00000318006 I3L3M4 83 aa9.14□□□□□ -0.95
VPS39-201ENST00000318006 NBL1P41271 181 aa9.14□□□□□ -0.95
VPS39-201ENST00000318006 CRYBA4P53673 196 aa9.14□□□□□ -0.95
VPS39-201ENST00000318006 WFDC2Q14508 124 aa9.14□□□□□ -0.95
VPS39-201ENST00000318006 ZNF833PQ6ZTB9 187 aa9.14□□□□□ -0.95
VPS39-201ENST00000318006 NOTCH3Q9UM47 2321 aa9.14□□□□□ -0.95
VPS39-201ENST00000318006 LOXP28300 417 aaPredicted RBP9.14□□□□□ -0.95
VPS39-201ENST00000318006 CITED2Q99967 270 aaPredicted RBP9.14□□□□□ -0.95
VPS39-201ENST00000318006 MUC6Q6W4X9 2439 aa9.13□□□□□ -0.95
VPS39-201ENST00000318006 TEN1Q86WV5 123 aa9.13□□□□□ -0.95
VPS39-201ENST00000318006 DNAH12Q6ZR08 3092 aa9.13□□□□□ -0.95
VPS39-201ENST00000318006 ACYP1P07311 99 aa9.13□□□□□ -0.95
VPS39-201ENST00000318006 RHPN1-AS1Q9BWJ2 59 aa9.13□□□□□ -0.95
VPS39-201ENST00000318006 ZGRF1Q86YA3 2104 aa9.13□□□□□ -0.95
VPS39-201ENST00000318006 TRAV26-1A0A087WT03 109 aa9.13□□□□□ -0.95
VPS39-201ENST00000318006 TRGV1A0A0A0MS02 117 aa9.13□□□□□ -0.95
VPS39-201ENST00000318006 MALRD1Q5VYJ5 2156 aa9.13□□□□□ -0.95
VPS39-201ENST00000318006 PRSS29PA6NIE9 313 aa9.12□□□□□ -0.95
VPS39-201ENST00000318006 USMG5Q96IX5 58 aa9.12□□□□□ -0.95
VPS39-201ENST00000318006 FAM223BA6NKX1 122 aa9.12□□□□□ -0.95
VPS39-201ENST00000318006 HTN3P15516 51 aa9.12□□□□□ -0.95
VPS39-201ENST00000318006 POU2AF1Q16633 256 aa9.12□□□□□ -0.95
VPS39-201ENST00000318006 FAM223AQ8IWN6 122 aa9.12□□□□□ -0.95
VPS39-201ENST00000318006 WT1P19544 449 aaPredicted RBP9.12□□□□□ -0.95
VPS39-201ENST00000318006 HIGD1BQ9P298 99 aa9.12□□□□□ -0.95
VPS39-201ENST00000318006 LINC00311Q8N616 119 aa9.12□□□□□ -0.95
VPS39-201ENST00000318006 UBE2E1P51965 193 aa9.11□□□□□ -0.95
VPS39-201ENST00000318006 FXYD2P54710 66 aa9.11□□□□□ -0.95
VPS39-201ENST00000318006 K7EMI3 77 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 116.9 ms