RNA–Protein interactions for RNA: ENST00000296581.10

LSM6-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 2,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-201ENST00000296581 CBLN1P23435 193 aa11.86□□□□□ -0.51
LSM6-201ENST00000296581 SLC50A1Q9BRV3 221 aa11.86□□□□□ -0.51
LSM6-201ENST00000296581 DAZ1Q9NQZ3 744 aaKnown RBP11.86□□□□□ -0.51
LSM6-201ENST00000296581 A0A1W2PS18 150 aa11.85□□□□□ -0.51
LSM6-201ENST00000296581 K7EQM0 130 aa11.85□□□□□ -0.51
LSM6-201ENST00000296581 ZNF418Q8TF45 676 aaPredicted RBP11.85□□□□□ -0.51
LSM6-201ENST00000296581 GRAMD2BQ96HH9 432 aa11.85□□□□□ -0.51
LSM6-201ENST00000296581 CLEC5AQ9NY25 188 aa11.85□□□□□ -0.51
LSM6-201ENST00000296581 V9GYV3 84 aa11.85□□□□□ -0.51
LSM6-201ENST00000296581 TRAV8-1A0A0A6YYK1 113 aa11.85□□□□□ -0.51
LSM6-201ENST00000296581 IGHV7-4-1A0A0J9YVY3 117 aa11.85□□□□□ -0.51
LSM6-201ENST00000296581 G3V4G9 280 aa11.85□□□□□ -0.51
LSM6-201ENST00000296581 CSN1S1P47710 185 aa11.85□□□□□ -0.51
LSM6-201ENST00000296581 HILS1P60008 231 aa11.85□□□□□ -0.51
LSM6-201ENST00000296581 FAM231DQ6ZW35 169 aa11.85□□□□□ -0.51
LSM6-201ENST00000296581 MRPL18Q9H0U6 180 aaKnown RBP11.85□□□□□ -0.51
LSM6-201ENST00000296581 PSG3Q16557 428 aa11.84□□□□□ -0.51
LSM6-201ENST00000296581 RPEL1Q2QD12 228 aa11.84□□□□□ -0.51
LSM6-201ENST00000296581 RNASE7Q9H1E1 156 aaKnown RBP11.84□□□□□ -0.51
LSM6-201ENST00000296581 C3orf79P0CE67 100 aa11.84□□□□□ -0.51
LSM6-201ENST00000296581 AMTP48728 403 aa11.84□□□□□ -0.51
LSM6-201ENST00000296581 TM4SF20Q53R12 229 aa11.84□□□□□ -0.51
LSM6-201ENST00000296581 IBA57Q5T440 356 aaKnown RBP11.84□□□□□ -0.51
LSM6-201ENST00000296581 ATOH7Q8N100 152 aa11.84□□□□□ -0.51
LSM6-201ENST00000296581 WIPF2Q8TF74 440 aaPredicted RBP11.84□□□□□ -0.51
LSM6-201ENST00000296581 UFC1Q9Y3C8 167 aa11.84□□□□□ -0.51
LSM6-201ENST00000296581 OTOGQ6ZRI0 2925 aa11.83□□□□□ -0.52
LSM6-201ENST00000296581 HLA-DMBP28068 263 aa11.83□□□□□ -0.52
LSM6-201ENST00000296581 TCTEX1D4Q5JR98 221 aa11.83□□□□□ -0.52
LSM6-201ENST00000296581 C8orf86Q6ZUL3 223 aa11.83□□□□□ -0.52
LSM6-201ENST00000296581 IL36BQ9NZH7 164 aa11.83□□□□□ -0.52
LSM6-201ENST00000296581 PSG8Q9UQ74 426 aa11.83□□□□□ -0.52
LSM6-201ENST00000296581 IGHV4OR15-8A0A075B7B6 117 aa11.83□□□□□ -0.52
LSM6-201ENST00000296581 A0A087WW49 117 aa11.83□□□□□ -0.52
LSM6-201ENST00000296581 TRAV8-2A0A0B4J237 113 aa11.83□□□□□ -0.52
LSM6-201ENST00000296581 CHEK1O14757 476 aa11.83□□□□□ -0.52
LSM6-201ENST00000296581 IGFL4Q6B9Z1 124 aa11.83□□□□□ -0.52
LSM6-201ENST00000296581 PRNTQ86SH4 94 aa11.83□□□□□ -0.52
LSM6-201ENST00000296581 RHPN1-AS1Q9BWJ2 59 aa11.83□□□□□ -0.52
LSM6-201ENST00000296581 C16orf95Q9H693 158 aa11.83□□□□□ -0.52
LSM6-201ENST00000296581 HIVEP2P31629 2446 aa11.82□□□□□ -0.52
LSM6-201ENST00000296581 A0A1B0GV72 72 aa11.82□□□□□ -0.52
LSM6-201ENST00000296581 LCN12Q6JVE5 192 aa11.82□□□□□ -0.52
LSM6-201ENST00000296581 FER1L6-AS1Q8NA97 138 aa11.82□□□□□ -0.52
LSM6-201ENST00000296581 FBLL1A6NHQ2 334 aaKnown RBP11.81□□□□□ -0.52
LSM6-201ENST00000296581 LGALS9O00182 355 aa11.81□□□□□ -0.52
LSM6-201ENST00000296581 PMCHP20382 165 aa11.81□□□□□ -0.52
LSM6-201ENST00000296581 DEFB125Q8N687 156 aa11.81□□□□□ -0.52
LSM6-201ENST00000296581 MRPL53Q96EL3 112 aaKnown RBP11.81□□□□□ -0.52
LSM6-201ENST00000296581 KCNS1Q96KK3 526 aa11.81□□□□□ -0.52
LSM6-201ENST00000296581 ZNF492Q9P255 531 aa11.81□□□□□ -0.52
LSM6-201ENST00000296581 MTORP42345 2549 aa11.81□□□□□ -0.52
LSM6-201ENST00000296581 MPV17L2Q567V2 206 aa11.81□□□□□ -0.52
LSM6-201ENST00000296581 TRAV9-1A0A075B6T8 112 aa11.8□□□□□ -0.52
LSM6-201ENST00000296581 TMEM213A2RRL7 107 aa11.8□□□□□ -0.52
LSM6-201ENST00000296581 SCGB1A1P11684 91 aa11.8□□□□□ -0.52
LSM6-201ENST00000296581 PMCHL1Q16048 86 aa11.8□□□□□ -0.52
LSM6-201ENST00000296581 OR1N2Q8NGR9 330 aa11.8□□□□□ -0.52
LSM6-201ENST00000296581 C4orf3Q8WVX3 66 aa11.8□□□□□ -0.52
LSM6-201ENST00000296581 IGKV2-40A0A087WW87 121 aaPredicted RBP11.8□□□□□ -0.52
LSM6-201ENST00000296581 C19orf71A6NCJ1 209 aa11.8□□□□□ -0.52
LSM6-201ENST00000296581 IGKV2D-40P01614 121 aaPredicted RBP11.8□□□□□ -0.52
LSM6-201ENST00000296581 HOXD3P31249 432 aaPredicted RBP11.8□□□□□ -0.52
LSM6-201ENST00000296581 C18orf65Q6ZTR6 163 aa11.8□□□□□ -0.52
LSM6-201ENST00000296581 RNF182Q8N6D2 247 aa11.8□□□□□ -0.52
LSM6-201ENST00000296581 TRAV9-2A0A087WT02 112 aa11.79□□□□□ -0.52
LSM6-201ENST00000296581 RBAKDNA6NC62 111 aa11.79□□□□□ -0.52
LSM6-201ENST00000296581 SOCS3O14543 225 aa11.79□□□□□ -0.52
LSM6-201ENST00000296581 PRB4P10163 310 aaPredicted RBP11.79□□□□□ -0.52
LSM6-201ENST00000296581 LINC00322Q6ZN03 302 aaPredicted RBP11.79□□□□□ -0.52
LSM6-201ENST00000296581 Q71RC1 249 aaPredicted RBP11.79□□□□□ -0.52
LSM6-201ENST00000296581 JMJD8Q96S16 334 aa11.79□□□□□ -0.52
LSM6-201ENST00000296581 EDN2P20800 178 aa11.79□□□□□ -0.52
LSM6-201ENST00000296581 BVES-AS1Q5T3Y7 98 aa11.79□□□□□ -0.52
LSM6-201ENST00000296581 ZNF324O75467 553 aaPredicted RBP11.78□□□□□ -0.52
LSM6-201ENST00000296581 SYNJ2BPP57105 145 aa11.78□□□□□ -0.52
LSM6-201ENST00000296581 KLF5Q13887 457 aaPredicted RBP11.78□□□□□ -0.52
LSM6-201ENST00000296581 COX8CQ7Z4L0 72 aa11.78□□□□□ -0.52
LSM6-201ENST00000296581 LINC01006Q8NI28 216 aa11.78□□□□□ -0.52
LSM6-201ENST00000296581 C16orf92Q96LL3 132 aa11.78□□□□□ -0.52
LSM6-201ENST00000296581 TRAV8-6A0A0B4J262 113 aa11.77□□□□□ -0.52
LSM6-201ENST00000296581 SMIM27A0A1W2PRY6 76 aa11.77□□□□□ -0.52
LSM6-201ENST00000296581 PRAC2D3DTV9 90 aa11.77□□□□□ -0.52
LSM6-201ENST00000296581 IGLL1P15814 213 aa11.77□□□□□ -0.52
LSM6-201ENST00000296581 ZC2HC1AQ96GY0 325 aa11.77□□□□□ -0.52
LSM6-201ENST00000296581 RCHY1Q96PM5 261 aa11.77□□□□□ -0.52
LSM6-201ENST00000296581 VGLL1Q99990 258 aa11.77□□□□□ -0.52
LSM6-201ENST00000296581 LINC01619G3V211 115 aa11.77□□□□□ -0.53
LSM6-201ENST00000296581 NDUFA7O95182 113 aa11.77□□□□□ -0.53
LSM6-201ENST00000296581 MUC21A0A0G2JKD1 596 aa11.76□□□□□ -0.53
LSM6-201ENST00000296581 MUC21A0A140T8X8 626 aa11.76□□□□□ -0.53
LSM6-201ENST00000296581 NPIPB6E9PJ23 425 aa11.76□□□□□ -0.53
LSM6-201ENST00000296581 DEFB136Q30KP8 78 aa11.76□□□□□ -0.53
LSM6-201ENST00000296581 CT83Q5H943 113 aa11.76□□□□□ -0.53
LSM6-201ENST00000296581 OR10J3Q5JRS4 329 aa11.76□□□□□ -0.53
LSM6-201ENST00000296581 MUC21Q5SSG8 566 aa11.76□□□□□ -0.53
LSM6-201ENST00000296581 SNURFLB1AK76 121 aa11.76□□□□□ -0.53
LSM6-201ENST00000296581 INAFM1C9JVW0 142 aa11.76□□□□□ -0.53
LSM6-201ENST00000296581 BORCS7Q96B45 105 aa11.76□□□□□ -0.53
LSM6-201ENST00000296581 PRR25Q96S07 402 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 140.4 ms