RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 HOXD3P31249 432 aaPredicted RBP13.69□□□□□ -0.22
SHANK1-201ENST00000293441 DNAJC30Q96LL9 226 aa13.69□□□□□ -0.22
SHANK1-201ENST00000293441 TMEM14CQ9P0S9 112 aa13.69□□□□□ -0.22
SHANK1-201ENST00000293441 IGHV4-38-2P0DP08 117 aa13.68□□□□□ -0.22
SHANK1-201ENST00000293441 NOP10Q9NPE3 64 aaKnown RBP13.68□□□□□ -0.22
SHANK1-201ENST00000293441 SNHG12Q9BXW3 62 aa13.68□□□□□ -0.22
SHANK1-201ENST00000293441 RMI2Q96E14 147 aa13.68□□□□□ -0.22
SHANK1-201ENST00000293441 DOCK11Q5JSL3 2073 aa13.68□□□□□ -0.22
SHANK1-201ENST00000293441 KIR3DS1Q14943 382 aa13.68□□□□□ -0.22
SHANK1-201ENST00000293441 MPV17L2Q567V2 206 aa13.68□□□□□ -0.22
SHANK1-201ENST00000293441 TMEM126AQ9H061 195 aa13.68□□□□□ -0.22
SHANK1-201ENST00000293441 IGLC1P0CG04 106 aa13.67□□□□□ -0.22
SHANK1-201ENST00000293441 RPL32P62910 135 aaKnown RBP13.67□□□□□ -0.22
SHANK1-201ENST00000293441 F6UB75 175 aa13.67□□□□□ -0.22
SHANK1-201ENST00000293441 SIGMAR1Q99720 223 aa13.67□□□□□ -0.22
SHANK1-201ENST00000293441 HLA-DMBP28068 263 aa13.66□□□□□ -0.22
SHANK1-201ENST00000293441 VOPP1Q96AW1 172 aa13.66□□□□□ -0.22
SHANK1-201ENST00000293441 ZC2HC1AQ96GY0 325 aa13.66□□□□□ -0.22
SHANK1-201ENST00000293441 H3BUA1 57 aa13.66□□□□□ -0.22
SHANK1-201ENST00000293441 SLURP1P55000 103 aa13.66□□□□□ -0.22
SHANK1-201ENST00000293441 ZNF726P1Q15940 193 aa13.66□□□□□ -0.22
SHANK1-201ENST00000293441 GAGE2AQ6NT46 116 aa13.66□□□□□ -0.22
SHANK1-201ENST00000293441 PRSS57Q6UWY2 283 aa13.66□□□□□ -0.22
SHANK1-201ENST00000293441 OCIAD2Q56VL3 154 aa13.66□□□□□ -0.22
SHANK1-201ENST00000293441 ZGRF1Q86YA3 2104 aa13.66□□□□□ -0.22
SHANK1-201ENST00000293441 IGLV2-23P01705 113 aa13.66□□□□□ -0.22
SHANK1-201ENST00000293441 ADCYAP1P18509 176 aa13.66□□□□□ -0.22
SHANK1-201ENST00000293441 RSPO3Q9BXY4 272 aaPredicted RBP13.65□□□□□ -0.22
SHANK1-201ENST00000293441 RNASE13Q5GAN3 156 aaKnown RBP13.65□□□□□ -0.22
SHANK1-201ENST00000293441 C17orf77Q96MU5 243 aa13.65□□□□□ -0.22
SHANK1-201ENST00000293441 A0A1B0GUS0 222 aa13.65□□□□□ -0.22
SHANK1-201ENST00000293441 CT83Q5H943 113 aa13.65□□□□□ -0.22
SHANK1-201ENST00000293441 APRG1Q8IVJ8 170 aa13.64□□□□□ -0.23
SHANK1-201ENST00000293441 FAM231BA6NCW3 169 aa13.64□□□□□ -0.23
SHANK1-201ENST00000293441 FOXI2Q6ZQN5 318 aa13.64□□□□□ -0.23
SHANK1-201ENST00000293441 FXYD5Q96DB9 178 aa13.64□□□□□ -0.23
SHANK1-201ENST00000293441 PRSS29PA6NIE9 313 aa13.64□□□□□ -0.23
SHANK1-201ENST00000293441 ATP6V0BQ99437 205 aa13.64□□□□□ -0.23
SHANK1-201ENST00000293441 C9JAW5 83 aa13.64□□□□□ -0.23
SHANK1-201ENST00000293441 IGFL2Q6UWQ7 119 aa13.64□□□□□ -0.23
SHANK1-201ENST00000293441 MRPL53Q96EL3 112 aaKnown RBP13.64□□□□□ -0.23
SHANK1-201ENST00000293441 IGKV1OR2-108A0A075B7D4 117 aa13.63□□□□□ -0.23
SHANK1-201ENST00000293441 C9orf66Q5T8R8 295 aa13.63□□□□□ -0.23
SHANK1-201ENST00000293441 C18orf32Q8TCD1 76 aa13.63□□□□□ -0.23
SHANK1-201ENST00000293441 C9JQL5 133 aa13.63□□□□□ -0.23
SHANK1-201ENST00000293441 IGKV2D-24A0A075B6R9 120 aa13.63□□□□□ -0.23
SHANK1-201ENST00000293441 NCKAP5O14513 1909 aa13.63□□□□□ -0.23
SHANK1-201ENST00000293441 ZNF491Q8N8L2 437 aa13.63□□□□□ -0.23
SHANK1-201ENST00000293441 KLF5Q13887 457 aaPredicted RBP13.63□□□□□ -0.23
SHANK1-201ENST00000293441 U3KQE9 123 aa13.63□□□□□ -0.23
SHANK1-201ENST00000293441 CENPVL3A0A0U1RRI6 287 aa13.62□□□□□ -0.23
SHANK1-201ENST00000293441 GNRH2O43555 120 aa13.62□□□□□ -0.23
SHANK1-201ENST00000293441 C11orf53Q8IXP5 236 aa13.62□□□□□ -0.23
SHANK1-201ENST00000293441 ADORA2A-AS1P86434 159 aa13.62□□□□□ -0.23
SHANK1-201ENST00000293441 GPR179Q6PRD1 2367 aa13.62□□□□□ -0.23
SHANK1-201ENST00000293441 IGHV1-24A0A0C4DH33 117 aa13.62□□□□□ -0.23
SHANK1-201ENST00000293441 IGLV3-1P01715 115 aa13.61□□□□□ -0.23
SHANK1-201ENST00000293441 Q6ZQT7 251 aa13.61□□□□□ -0.23
SHANK1-201ENST00000293441 Q9HAA7 133 aa13.61□□□□□ -0.23
SHANK1-201ENST00000293441 ADAMTS9Q9P2N4 1935 aa13.61□□□□□ -0.23
SHANK1-201ENST00000293441 DENND4CQ5VZ89 1909 aa13.61□□□□□ -0.23
SHANK1-201ENST00000293441 LHBP01229 141 aa13.61□□□□□ -0.23
SHANK1-201ENST00000293441 SPINK8P0C7L1 97 aa13.61□□□□□ -0.23
SHANK1-201ENST00000293441 TRAV25A0A0B4J276 109 aa13.61□□□□□ -0.23
SHANK1-201ENST00000293441 OR11H6Q8NGC7 330 aa13.61□□□□□ -0.23
SHANK1-201ENST00000293441 Q0VG73 95 aa13.6□□□□□ -0.23
SHANK1-201ENST00000293441 GAGE2BQ13066 116 aa13.6□□□□□ -0.23
SHANK1-201ENST00000293441 SUMO4Q6EEV6 95 aa13.6□□□□□ -0.23
SHANK1-201ENST00000293441 DYNAPQ8N1N2 210 aa13.6□□□□□ -0.23
SHANK1-201ENST00000293441 SMIM27A0A1W2PRY6 76 aa13.6□□□□□ -0.23
SHANK1-201ENST00000293441 GTF3C1Q12789 2109 aa13.6□□□□□ -0.23
SHANK1-201ENST00000293441 KLF2Q9Y5W3 355 aaPredicted RBP13.6□□□□□ -0.23
SHANK1-201ENST00000293441 V9GYV3 84 aa13.6□□□□□ -0.23
SHANK1-201ENST00000293441 ABCA1O95477 2261 aa13.6□□□□□ -0.23
SHANK1-201ENST00000293441 FOXE3Q13461 319 aa13.6□□□□□ -0.23
SHANK1-201ENST00000293441 PCNX1Q96RV3 2341 aa13.6□□□□□ -0.23
SHANK1-201ENST00000293441 IGLC7A0M8Q6 106 aa13.6□□□□□ -0.23
SHANK1-201ENST00000293441 SLAQ13239 276 aa13.6□□□□□ -0.23
SHANK1-201ENST00000293441 RHOHQ15669 191 aa13.59□□□□□ -0.23
SHANK1-201ENST00000293441 IGF2-ASQ6U949 168 aa13.59□□□□□ -0.23
SHANK1-201ENST00000293441 GP9P14770 177 aa13.59□□□□□ -0.23
SHANK1-201ENST00000293441 ZFAND6Q6FIF0 208 aa13.59□□□□□ -0.23
SHANK1-201ENST00000293441 SCRT2Q9NQ03 307 aa13.59□□□□□ -0.23
SHANK1-201ENST00000293441 BLCAPP62952 87 aa13.59□□□□□ -0.23
SHANK1-201ENST00000293441 C8orf31Q8N9H6 132 aa13.59□□□□□ -0.23
SHANK1-201ENST00000293441 XCL1P47992 114 aa13.59□□□□□ -0.23
SHANK1-201ENST00000293441 DKK4Q9UBT3 224 aa13.59□□□□□ -0.23
SHANK1-201ENST00000293441 PYY3Q5JQD4 70 aa13.58□□□□□ -0.24
SHANK1-201ENST00000293441 SIGLEC8Q9NYZ4 499 aa13.58□□□□□ -0.24
SHANK1-201ENST00000293441 NPYP01303 97 aa13.58□□□□□ -0.24
SHANK1-201ENST00000293441 RITA1Q96K30 269 aa13.58□□□□□ -0.24
SHANK1-201ENST00000293441 NDUFA12Q9UI09 145 aa13.57□□□□□ -0.24
SHANK1-201ENST00000293441 A8MWP6 167 aa13.57□□□□□ -0.24
SHANK1-201ENST00000293441 PIFOQ8TCI5 191 aa13.57□□□□□ -0.24
SHANK1-201ENST00000293441 CFHR4Q92496 578 aa13.57□□□□□ -0.24
SHANK1-201ENST00000293441 SPRY2O43597 315 aa13.56□□□□□ -0.24
SHANK1-201ENST00000293441 C10orf105Q8TEF2 133 aa13.56□□□□□ -0.24
SHANK1-201ENST00000293441 EDA2RQ9HAV5 297 aa13.56□□□□□ -0.24
SHANK1-201ENST00000293441 SMIM2Q9BVW6 85 aa13.56□□□□□ -0.24
SHANK1-201ENST00000293441 RBMY1FQ15415 496 aaKnown RBP13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 77 ms