RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 DOPEY2Q9Y3R5 2298 aa9.85□□□□□ -0.83
LIG1-201ENST00000263274 TEX48A0A1B0GUV7 120 aa9.85□□□□□ -0.83
LIG1-201ENST00000263274 FABP5P3A8MUU1 101 aa9.85□□□□□ -0.83
LIG1-201ENST00000263274 G3V318 75 aa9.85□□□□□ -0.83
LIG1-201ENST00000263274 K7EMI3 77 aa9.85□□□□□ -0.83
LIG1-201ENST00000263274 RAB9AP51151 201 aa9.85□□□□□ -0.83
LIG1-201ENST00000263274 DEFB104AQ8WTQ1 72 aa9.85□□□□□ -0.83
LIG1-201ENST00000263274 FOXC2Q99958 501 aa9.85□□□□□ -0.83
LIG1-201ENST00000263274 CTSGP08311 255 aa9.85□□□□□ -0.83
LIG1-201ENST00000263274 CCDC144NLQ6NUI1 221 aa9.85□□□□□ -0.83
LIG1-201ENST00000263274 CFHR4Q92496 578 aa9.85□□□□□ -0.83
LIG1-201ENST00000263274 TMEM160Q9NX00 188 aa9.85□□□□□ -0.83
LIG1-201ENST00000263274 PRTN3P24158 256 aa9.84□□□□□ -0.83
LIG1-201ENST00000263274 KIR3DS1Q14943 382 aa9.84□□□□□ -0.83
LIG1-201ENST00000263274 IL17RELQ6ZVW7 336 aa9.84□□□□□ -0.83
LIG1-201ENST00000263274 A0A096LNJ9 63 aa9.84□□□□□ -0.83
LIG1-201ENST00000263274 C2orf91Q6ZV80 131 aa9.84□□□□□ -0.83
LIG1-201ENST00000263274 ATP6V0BQ99437 205 aa9.84□□□□□ -0.83
LIG1-201ENST00000263274 HIVEP3Q5T1R4 2406 aa9.84□□□□□ -0.83
LIG1-201ENST00000263274 TRAV26-2A0A0B4J265 109 aa9.84□□□□□ -0.83
LIG1-201ENST00000263274 C9orf118A6NHY6 69 aa9.84□□□□□ -0.83
LIG1-201ENST00000263274 K7EP34 96 aa9.84□□□□□ -0.83
LIG1-201ENST00000263274 MRPS12O15235 138 aaKnown RBP9.84□□□□□ -0.83
LIG1-201ENST00000263274 CKS1BP61024 79 aa9.84□□□□□ -0.83
LIG1-201ENST00000263274 PDE6HQ13956 83 aa9.84□□□□□ -0.83
LIG1-201ENST00000263274 GTSCR1Q86UQ5 136 aa9.84□□□□□ -0.83
LIG1-201ENST00000263274 TSSC4Q9Y5U2 329 aaPredicted RBP9.84□□□□□ -0.83
LIG1-201ENST00000263274 SEC11AP67812 179 aa9.83□□□□□ -0.84
LIG1-201ENST00000263274 SPANXN1Q5VSR9 72 aa9.83□□□□□ -0.84
LIG1-201ENST00000263274 UBTD1Q9HAC8 227 aa9.83□□□□□ -0.84
LIG1-201ENST00000263274 IGSF10Q6WRI0 2623 aa9.83□□□□□ -0.84
LIG1-201ENST00000263274 NOTCH2Q04721 2471 aa9.83□□□□□ -0.84
LIG1-201ENST00000263274 FABP2P12104 132 aa9.83□□□□□ -0.84
LIG1-201ENST00000263274 HOXB4P17483 251 aaPredicted RBP9.83□□□□□ -0.84
LIG1-201ENST00000263274 TMEM219Q86XT9 240 aa9.83□□□□□ -0.84
LIG1-201ENST00000263274 BRI3O95415 125 aa9.83□□□□□ -0.84
LIG1-201ENST00000263274 HSD52Q0P140 79 aa9.83□□□□□ -0.84
LIG1-201ENST00000263274 LY6DQ14210 128 aa9.83□□□□□ -0.84
LIG1-201ENST00000263274 OR11H6Q8NGC7 330 aa9.83□□□□□ -0.84
LIG1-201ENST00000263274 LRRK2Q5S007 2527 aa9.82□□□□□ -0.84
LIG1-201ENST00000263274 CUBNO60494 3623 aa9.82□□□□□ -0.84
LIG1-201ENST00000263274 SMAD7O15105 426 aaKnown RBP9.82□□□□□ -0.84
LIG1-201ENST00000263274 TMEM78Q5T7P6 136 aa9.82□□□□□ -0.84
LIG1-201ENST00000263274 TMEM158Q8WZ71 300 aa9.82□□□□□ -0.84
LIG1-201ENST00000263274 SRSF8Q9BRL6 282 aaKnown RBP9.82□□□□□ -0.84
LIG1-201ENST00000263274 NPFFR1Q9GZQ6 430 aa9.82□□□□□ -0.84
LIG1-201ENST00000263274 SMAD5-AS1Q9Y6J3 95 aa9.82□□□□□ -0.84
LIG1-201ENST00000263274 SORL1Q92673 2214 aa9.82□□□□□ -0.84
LIG1-201ENST00000263274 TNFRSF6BO95407 300 aa9.82□□□□□ -0.84
LIG1-201ENST00000263274 LINC01548A6NM66 108 aa9.81□□□□□ -0.84
LIG1-201ENST00000263274 F8W735 103 aaPredicted RBP9.81□□□□□ -0.84
LIG1-201ENST00000263274 ATP6V0E1O15342 81 aa9.81□□□□□ -0.84
LIG1-201ENST00000263274 ZFP36P26651 326 aaKnown RBP9.81□□□□□ -0.84
LIG1-201ENST00000263274 IGHV7-81A0A0B4J1V7 117 aa9.81□□□□□ -0.84
LIG1-201ENST00000263274 NDUFA3O95167 84 aa9.81□□□□□ -0.84
LIG1-201ENST00000263274 ID1P41134 155 aa9.81□□□□□ -0.84
LIG1-201ENST00000263274 LGALS9BQ3B8N2 356 aa9.81□□□□□ -0.84
LIG1-201ENST00000263274 LGALS9CQ6DKI2 356 aa9.81□□□□□ -0.84
LIG1-201ENST00000263274 Q6ZQT7 251 aa9.81□□□□□ -0.84
LIG1-201ENST00000263274 NPBQ8NG41 125 aa9.81□□□□□ -0.84
LIG1-201ENST00000263274 UFSP1Q6NVU6 142 aa9.81□□□□□ -0.84
LIG1-201ENST00000263274 ZNF493Q6ZR52 646 aa9.81□□□□□ -0.84
LIG1-201ENST00000263274 S100A4P26447 101 aaKnown RBP9.8□□□□□ -0.84
LIG1-201ENST00000263274 POLQO75417 2590 aa9.8□□□□□ -0.84
LIG1-201ENST00000263274 CFAP46Q8IYW2 2715 aa9.8□□□□□ -0.84
LIG1-201ENST00000263274 TRBV6-1A0A0K0K1D8 114 aa9.8□□□□□ -0.84
LIG1-201ENST00000263274 H3BRM9 83 aa9.8□□□□□ -0.84
LIG1-201ENST00000263274 OVOL3O00110 214 aa9.8□□□□□ -0.84
LIG1-201ENST00000263274 MTURNQ8N3F0 131 aa9.8□□□□□ -0.84
LIG1-201ENST00000263274 TTC9CQ8N5M4 171 aa9.8□□□□□ -0.84
LIG1-201ENST00000263274 LY6G5BQ8NDX9 201 aa9.8□□□□□ -0.84
LIG1-201ENST00000263274 C16orf92Q96LL3 132 aa9.8□□□□□ -0.84
LIG1-201ENST00000263274 NOTCH3Q9UM47 2321 aa9.8□□□□□ -0.84
LIG1-201ENST00000263274 M0R381 172 aa9.8□□□□□ -0.84
LIG1-201ENST00000263274 TRGV3P03979 118 aa9.8□□□□□ -0.84
LIG1-201ENST00000263274 DEFB1P60022 68 aa9.8□□□□□ -0.84
LIG1-201ENST00000263274 ZC2HC1BQ5TFG8 222 aa9.8□□□□□ -0.84
LIG1-201ENST00000263274 DTX2Q86UW9 622 aa9.8□□□□□ -0.84
LIG1-201ENST00000263274 PIP4P2Q8N4L2 257 aa9.8□□□□□ -0.84
LIG1-201ENST00000263274 GLMPQ8WWB7 406 aa9.8□□□□□ -0.84
LIG1-201ENST00000263274 K7ENP7 123 aa9.79□□□□□ -0.84
LIG1-201ENST00000263274 SS18L2Q9UHA2 77 aa9.79□□□□□ -0.84
LIG1-201ENST00000263274 GAGE12HA6NDE8 117 aa9.79□□□□□ -0.84
LIG1-201ENST00000263274 H3BVH4 76 aa9.79□□□□□ -0.84
LIG1-201ENST00000263274 M0R1W7 72 aa9.79□□□□□ -0.84
LIG1-201ENST00000263274 NEGR1Q7Z3B1 354 aa9.79□□□□□ -0.84
LIG1-201ENST00000263274 MYOZ3Q8TDC0 251 aa9.79□□□□□ -0.84
LIG1-201ENST00000263274 AGPAT4-IT1Q9H0P7 198 aa9.79□□□□□ -0.84
LIG1-201ENST00000263274 SETD2Q9BYW2 2564 aaPredicted RBP9.78□□□□□ -0.84
LIG1-201ENST00000263274 TRAV40A0A0B4J280 105 aa9.78□□□□□ -0.84
LIG1-201ENST00000263274 A0A1W2PPM0 123 aa9.78□□□□□ -0.84
LIG1-201ENST00000263274 J3QR89 54 aa9.78□□□□□ -0.84
LIG1-201ENST00000263274 K7ERJ3 54 aa9.78□□□□□ -0.84
LIG1-201ENST00000263274 NHP2Q9NX24 153 aaKnown RBP9.78□□□□□ -0.84
LIG1-201ENST00000263274 SAA4P35542 130 aa9.78□□□□□ -0.84
LIG1-201ENST00000263274 ADAMTSL5Q6ZMM2 481 aa9.78□□□□□ -0.84
LIG1-201ENST00000263274 OR5A1Q8NGJ0 315 aa9.78□□□□□ -0.84
LIG1-201ENST00000263274 METTL26Q96S19 204 aa9.78□□□□□ -0.84
LIG1-201ENST00000263274 IGKV2D-26A0A0A0MRZ7 120 aa9.78□□□□□ -0.84
LIG1-201ENST00000263274 ATP5J2P56134 94 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 77.9 ms