RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 TRGV1A0A0A0MS02 117 aa11.11□□□□□ -0.63
CLN3-246ENST00000636228 C7orf71A4D174 169 aa11.11□□□□□ -0.63
CLN3-246ENST00000636228 H3BNG1 76 aa11.11□□□□□ -0.63
CLN3-246ENST00000636228 ZNF324O75467 553 aaPredicted RBP11.11□□□□□ -0.63
CLN3-246ENST00000636228 TCRBP04435 133 aa11.11□□□□□ -0.63
CLN3-246ENST00000636228 SLC25A5P05141 298 aaKnown RBP11.11□□□□□ -0.63
CLN3-246ENST00000636228 FUSP35637 526 aaKnown RBP eCLIP11.11□□□□□ -0.63
CLN3-246ENST00000636228 RPL29P47914 159 aaKnown RBP11.11□□□□□ -0.63
CLN3-246ENST00000636228 DEFA1P59665 94 aa11.11□□□□□ -0.63
CLN3-246ENST00000636228 DEFA3P59666 94 aa11.11□□□□□ -0.63
CLN3-246ENST00000636228 S100A10P60903 97 aa11.11□□□□□ -0.63
CLN3-246ENST00000636228 GCSAMLQ5JQS6 135 aa11.11□□□□□ -0.63
CLN3-246ENST00000636228 MZT2BQ6NZ67 158 aa11.11□□□□□ -0.63
CLN3-246ENST00000636228 BLNKQ8WV28 456 aa11.11□□□□□ -0.63
CLN3-246ENST00000636228 C2orf50Q96LR7 162 aa11.11□□□□□ -0.63
CLN3-246ENST00000636228 FUT9Q9Y231 359 aa11.11□□□□□ -0.63
CLN3-246ENST00000636228 IGHV3-53P01767 116 aa11.1□□□□□ -0.63
CLN3-246ENST00000636228 LINC00315P59091 139 aa11.1□□□□□ -0.63
CLN3-246ENST00000636228 VWC2Q2TAL6 325 aa11.1□□□□□ -0.63
CLN3-246ENST00000636228 C12orf45Q8N5I9 185 aaPredicted RBP11.1□□□□□ -0.63
CLN3-246ENST00000636228 FAM19A4Q96LR4 140 aa11.1□□□□□ -0.63
CLN3-246ENST00000636228 PFDN5Q99471 154 aa11.1□□□□□ -0.63
CLN3-246ENST00000636228 TP53TG3Q9ULZ0 132 aa11.1□□□□□ -0.63
CLN3-246ENST00000636228 TIMM9Q9Y5J7 89 aa11.1□□□□□ -0.63
CLN3-246ENST00000636228 FAM240BA0A1B0GVZ2 78 aa11.09□□□□□ -0.63
CLN3-246ENST00000636228 A0A1W2PPQ1 181 aa11.09□□□□□ -0.63
CLN3-246ENST00000636228 KLLNB2CW77 178 aa11.09□□□□□ -0.63
CLN3-246ENST00000636228 ZNF253O75346 499 aa11.09□□□□□ -0.63
CLN3-246ENST00000636228 FGF7P21781 194 aa11.09□□□□□ -0.63
CLN3-246ENST00000636228 SULT1A1P50225 295 aa11.09□□□□□ -0.63
CLN3-246ENST00000636228 RAB32Q13637 225 aa11.09□□□□□ -0.63
CLN3-246ENST00000636228 EIF4E3Q8N5X7 224 aaKnown RBP11.09□□□□□ -0.63
CLN3-246ENST00000636228 TMEM252Q8N6L7 170 aa11.09□□□□□ -0.63
CLN3-246ENST00000636228 MRPL53Q96EL3 112 aaKnown RBP11.09□□□□□ -0.63
CLN3-246ENST00000636228 NUDT15Q9NV35 164 aa11.09□□□□□ -0.63
CLN3-246ENST00000636228 TNFRSF18Q9Y5U5 241 aa11.09□□□□□ -0.63
CLN3-246ENST00000636228 IGKV2-40A0A087WW87 121 aaPredicted RBP11.08□□□□□ -0.64
CLN3-246ENST00000636228 IGKV2D-40P01614 121 aaPredicted RBP11.08□□□□□ -0.64
CLN3-246ENST00000636228 GPX1P07203 203 aa11.08□□□□□ -0.64
CLN3-246ENST00000636228 HIST1H1EP10412 219 aaKnown RBP11.08□□□□□ -0.64
CLN3-246ENST00000636228 BTF3P20290 206 aaKnown RBP11.08□□□□□ -0.64
CLN3-246ENST00000636228 PVALBP20472 110 aaPredicted RBP11.08□□□□□ -0.64
CLN3-246ENST00000636228 S100A11P31949 105 aa11.08□□□□□ -0.64
CLN3-246ENST00000636228 PRR9Q5T870 116 aa11.08□□□□□ -0.64
CLN3-246ENST00000636228 FAM122CQ6P4D5 195 aa11.08□□□□□ -0.64
CLN3-246ENST00000636228 ZNF680Q8NEM1 530 aa11.08□□□□□ -0.64
CLN3-246ENST00000636228 ENKURQ8TC29 256 aa11.08□□□□□ -0.64
CLN3-246ENST00000636228 LINC00477Q96M19 166 aa11.08□□□□□ -0.64
CLN3-246ENST00000636228 VGLL1Q99990 258 aa11.08□□□□□ -0.64
CLN3-246ENST00000636228 LYRM2Q9NU23 88 aaPredicted RBP11.08□□□□□ -0.64
CLN3-246ENST00000636228 MRPL16Q9NX20 251 aaKnown RBP11.08□□□□□ -0.64
CLN3-246ENST00000636228 TMEM14CQ9P0S9 112 aa11.08□□□□□ -0.64
CLN3-246ENST00000636228 SPINK4O60575 86 aa11.07□□□□□ -0.64
CLN3-246ENST00000636228 IL15RAQ13261 267 aa11.07□□□□□ -0.64
CLN3-246ENST00000636228 ICAM4Q14773 271 aa11.07□□□□□ -0.64
CLN3-246ENST00000636228 ANXA2RQ3ZCQ2 193 aa11.07□□□□□ -0.64
CLN3-246ENST00000636228 LINC00467Q9BRT7 94 aa11.07□□□□□ -0.64
CLN3-246ENST00000636228 SLC25A2Q9BXI2 301 aa11.07□□□□□ -0.64
CLN3-246ENST00000636228 GPN1Q9HCN4 374 aaPredicted RBP11.07□□□□□ -0.64
CLN3-246ENST00000636228 PAX4O43316 350 aa11.06□□□□□ -0.64
CLN3-246ENST00000636228 MPDU1O75352 247 aa11.06□□□□□ -0.64
CLN3-246ENST00000636228 PTTG1O95997 202 aa11.06□□□□□ -0.64
CLN3-246ENST00000636228 Q6ZRN7 208 aaPredicted RBP11.06□□□□□ -0.64
CLN3-246ENST00000636228 MIR17HGQ75NE6 70 aa11.06□□□□□ -0.64
CLN3-246ENST00000636228 STX12Q86Y82 276 aa11.06□□□□□ -0.64
CLN3-246ENST00000636228 THAP6Q8TBB0 222 aa11.06□□□□□ -0.64
CLN3-246ENST00000636228 CHAC2Q8WUX2 184 aa11.06□□□□□ -0.64
CLN3-246ENST00000636228 C18orf15Q96N68 181 aa11.06□□□□□ -0.64
CLN3-246ENST00000636228 PRELID1Q9Y255 219 aa11.06□□□□□ -0.64
CLN3-246ENST00000636228 RGS13O14921 159 aa11.05□□□□□ -0.64
CLN3-246ENST00000636228 SIVA1O15304 175 aa11.05□□□□□ -0.64
CLN3-246ENST00000636228 NXPH4O95158 308 aa11.05□□□□□ -0.64
CLN3-246ENST00000636228 H2AFB2P0C5Z0 115 aa11.05□□□□□ -0.64
CLN3-246ENST00000636228 CRISP2P16562 243 aa11.05□□□□□ -0.64
CLN3-246ENST00000636228 TCL1AP56279 114 aa11.05□□□□□ -0.64
CLN3-246ENST00000636228 HBG1P69891 147 aa11.05□□□□□ -0.64
CLN3-246ENST00000636228 HBG2P69892 147 aa11.05□□□□□ -0.64
CLN3-246ENST00000636228 NHLH2Q02577 135 aa11.05□□□□□ -0.64
CLN3-246ENST00000636228 C9orf47Q6ZRZ4 202 aa11.05□□□□□ -0.64
CLN3-246ENST00000636228 ZFAND2AQ8N6M9 145 aa11.05□□□□□ -0.64
CLN3-246ENST00000636228 NPCDR1Q9BY65 106 aa11.05□□□□□ -0.64
CLN3-246ENST00000636228 AAMDCQ9H7C9 122 aa11.05□□□□□ -0.64
CLN3-246ENST00000636228 ICOSQ9Y6W8 199 aa11.05□□□□□ -0.64
CLN3-246ENST00000636228 IGHV1OR15-1A0A075B7D0 117 aa11.04□□□□□ -0.64
CLN3-246ENST00000636228 PDE6HQ13956 83 aa11.04□□□□□ -0.64
CLN3-246ENST00000636228 ATP6V1FQ16864 119 aa11.04□□□□□ -0.64
CLN3-246ENST00000636228 TMEM78Q5T7P6 136 aa11.04□□□□□ -0.64
CLN3-246ENST00000636228 ST6GAL2Q96JF0 529 aa11.04□□□□□ -0.64
CLN3-246ENST00000636228 FAM167A-AS1Q96KT0 104 aa11.04□□□□□ -0.64
CLN3-246ENST00000636228 C8orf49Q96NF6 230 aa11.04□□□□□ -0.64
CLN3-246ENST00000636228 PRAF2O60831 178 aa11.03□□□□□ -0.64
CLN3-246ENST00000636228 SIX6O95475 246 aa11.03□□□□□ -0.64
CLN3-246ENST00000636228 NBEAP1P0C6P0 100 aa11.03□□□□□ -0.64
CLN3-246ENST00000636228 Q8TAT8 98 aa11.03□□□□□ -0.64
CLN3-246ENST00000636228 MARVELD1Q9BSK0 173 aa11.03□□□□□ -0.64
CLN3-246ENST00000636228 ZNF492Q9P255 531 aa11.03□□□□□ -0.64
CLN3-246ENST00000636228 HHLA3Q9XRX5 114 aa11.03□□□□□ -0.64
CLN3-246ENST00000636228 OR10J4P0C629 311 aa11.02□□□□□ -0.65
CLN3-246ENST00000636228 CRYBA4P53673 196 aa11.02□□□□□ -0.65
CLN3-246ENST00000636228 FHL2Q14192 279 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 86.2 ms