RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 SLC25A5P05141 298 aaKnown RBP14.87□□□□□ -0.03
CLN3-240ENST00000631023 SPART-AS1P0CW21 52 aa14.87□□□□□ -0.03
CLN3-240ENST00000631023 GCHFRP30047 84 aa14.87□□□□□ -0.03
CLN3-240ENST00000631023 TAS2R60P59551 318 aa14.87□□□□□ -0.03
CLN3-240ENST00000631023 HYLS1Q96M11 299 aa14.87□□□□□ -0.03
CLN3-240ENST00000631023 VGLL1Q99990 258 aa14.87□□□□□ -0.03
CLN3-240ENST00000631023 TMEM167BQ9NRX6 74 aa14.87□□□□□ -0.03
CLN3-240ENST00000631023 C11orf94C9JXX5 98 aa14.86□□□□□ -0.03
CLN3-240ENST00000631023 H7BYZ3 331 aa14.86□□□□□ -0.03
CLN3-240ENST00000631023 BCL2L11O43521 198 aa14.86□□□□□ -0.03
CLN3-240ENST00000631023 EIF5AP63241 154 aaKnown RBP14.86□□□□□ -0.03
CLN3-240ENST00000631023 GFI1BQ5VTD9 330 aa14.86□□□□□ -0.03
CLN3-240ENST00000631023 ARL6IP6Q8N6S5 226 aa14.86□□□□□ -0.03
CLN3-240ENST00000631023 ZNF471Q9BX82 626 aaPredicted RBP14.86□□□□□ -0.03
CLN3-240ENST00000631023 CTXND1A0A1B0GTU2 59 aa14.85□□□□□ -0.03
CLN3-240ENST00000631023 DIRC3C9JPN6 131 aa14.85□□□□□ -0.03
CLN3-240ENST00000631023 J3KRW8 73 aa14.85□□□□□ -0.03
CLN3-240ENST00000631023 PFDN1O60925 122 aa14.85□□□□□ -0.03
CLN3-240ENST00000631023 NMBP08949 121 aa14.85□□□□□ -0.03
CLN3-240ENST00000631023 KIR3DS1Q14943 382 aa14.85□□□□□ -0.03
CLN3-240ENST00000631023 SUN5Q8TC36 379 aa14.85□□□□□ -0.03
CLN3-240ENST00000631023 ZNF492Q9P255 531 aa14.85□□□□□ -0.03
CLN3-240ENST00000631023 CELA1Q9UNI1 258 aa14.85□□□□□ -0.03
CLN3-240ENST00000631023 HTN1P15515 57 aa14.85□□□□□ -0.03
CLN3-240ENST00000631023 ZNF138P52744 262 aa14.85□□□□□ -0.03
CLN3-240ENST00000631023 TMUB2Q71RG4 321 aa14.85□□□□□ -0.03
CLN3-240ENST00000631023 FAM19A4Q96LR4 140 aa14.85□□□□□ -0.03
CLN3-240ENST00000631023 NIPSNAP3BQ9BS92 247 aa14.85□□□□□ -0.03
CLN3-240ENST00000631023 YTHDF2Q9Y5A9 579 aaKnown RBP14.85□□□□□ -0.03
CLN3-240ENST00000631023 TRAV12-3A0A0B4J271 114 aa14.84□□□□□ -0.03
CLN3-240ENST00000631023 TRBV7-9A0A0J9YWB2 115 aa14.84□□□□□ -0.03
CLN3-240ENST00000631023 GPX1P07203 203 aa14.84□□□□□ -0.03
CLN3-240ENST00000631023 CRISP2P16562 243 aa14.84□□□□□ -0.03
CLN3-240ENST00000631023 IQCF2Q8IXL9 164 aa14.84□□□□□ -0.03
CLN3-240ENST00000631023 DKK2Q9UBU2 259 aa14.84□□□□□ -0.03
CLN3-240ENST00000631023 hCG_2014768A0A024R1R8 64 aa14.83□□□□□ -0.04
CLN3-240ENST00000631023 C7orf71A4D174 169 aa14.83□□□□□ -0.04
CLN3-240ENST00000631023 KLLNB2CW77 178 aa14.83□□□□□ -0.04
CLN3-240ENST00000631023 SEC11BP0C7V7 166 aa14.83□□□□□ -0.04
CLN3-240ENST00000631023 C12orf74Q32Q52 190 aa14.83□□□□□ -0.04
CLN3-240ENST00000631023 FAM222AQ5U5X8 452 aa14.83□□□□□ -0.04
CLN3-240ENST00000631023 CCDC28AQ8IWP9 274 aa14.83□□□□□ -0.04
CLN3-240ENST00000631023 KMT2CQ8NEZ4 4911 aaKnown RBP14.83□□□□□ -0.04
CLN3-240ENST00000631023 PRM2P04554 102 aa14.82□□□□□ -0.04
CLN3-240ENST00000631023 ZNF726P1Q15940 193 aa14.82□□□□□ -0.04
CLN3-240ENST00000631023 ZNF493Q6ZR52 646 aa14.82□□□□□ -0.04
CLN3-240ENST00000631023 Q6ZTC4 211 aa14.82□□□□□ -0.04
CLN3-240ENST00000631023 SSX7Q7RTT5 188 aa14.82□□□□□ -0.04
CLN3-240ENST00000631023 AKAP14Q86UN6 197 aa14.82□□□□□ -0.04
CLN3-240ENST00000631023 PYGO2Q9BRQ0 406 aa14.82□□□□□ -0.04
CLN3-240ENST00000631023 TRAV10A0A0B4J240 114 aa14.81□□□□□ -0.04
CLN3-240ENST00000631023 AZU1P20160 251 aa14.81□□□□□ -0.04
CLN3-240ENST00000631023 RNASE4P34096 147 aaKnown RBP14.81□□□□□ -0.04
CLN3-240ENST00000631023 C2CD4CQ8TF44 421 aa14.81□□□□□ -0.04
CLN3-240ENST00000631023 C16orf74Q96GX8 76 aa14.81□□□□□ -0.04
CLN3-240ENST00000631023 RPH3ALQ9UNE2 315 aa14.81□□□□□ -0.04
CLN3-240ENST00000631023 UMAD1C9J7I0 102 aa14.81□□□□□ -0.04
CLN3-240ENST00000631023 C1QBP02746 253 aa14.81□□□□□ -0.04
CLN3-240ENST00000631023 TMEM263Q8WUH6 116 aaKnown RBP14.81□□□□□ -0.04
CLN3-240ENST00000631023 TMED6Q8WW62 240 aa14.81□□□□□ -0.04
CLN3-240ENST00000631023 LENEPQ9Y5L5 61 aa14.81□□□□□ -0.04
CLN3-240ENST00000631023 TPT1P13693 172 aaKnown RBP14.8□□□□□ -0.04
CLN3-240ENST00000631023 GOLT1AQ6ZVE7 132 aa14.8□□□□□ -0.04
CLN3-240ENST00000631023 ZNF767PQ75MW2 155 aa14.8□□□□□ -0.04
CLN3-240ENST00000631023 ZFAND2AQ8N6M9 145 aa14.8□□□□□ -0.04
CLN3-240ENST00000631023 C5orf17Q8NAS9 161 aa14.8□□□□□ -0.04
CLN3-240ENST00000631023 Q8TAT8 98 aa14.8□□□□□ -0.04
CLN3-240ENST00000631023 STOML3Q8TAV4 291 aa14.8□□□□□ -0.04
CLN3-240ENST00000631023 LCE6AA0A183 80 aa14.79□□□□□ -0.04
CLN3-240ENST00000631023 SERTM2A0A1B0GWG4 89 aa14.79□□□□□ -0.04
CLN3-240ENST00000631023 LYRM9A8MSI8 78 aa14.79□□□□□ -0.04
CLN3-240ENST00000631023 SUMO1P63165 101 aaKnown RBP14.79□□□□□ -0.04
CLN3-240ENST00000631023 CD300CQ08708 224 aa14.79□□□□□ -0.04
CLN3-240ENST00000631023 A0A1W2PRE2 83 aa14.78□□□□□ -0.04
CLN3-240ENST00000631023 MAP1LC3B2A6NCE7 125 aa14.78□□□□□ -0.04
CLN3-240ENST00000631023 K7EQM0 130 aa14.78□□□□□ -0.04
CLN3-240ENST00000631023 BTN1A1Q13410 526 aa14.78□□□□□ -0.04
CLN3-240ENST00000631023 LGALSLQ3ZCW2 172 aaPredicted RBP14.78□□□□□ -0.04
CLN3-240ENST00000631023 MAP1LC3BQ9GZQ8 125 aa14.78□□□□□ -0.04
CLN3-240ENST00000631023 TIMM8BQ9Y5J9 83 aaPredicted RBP14.78□□□□□ -0.04
CLN3-240ENST00000631023 DEFB131BA0A096LNP1 70 aa14.77□□□□□ -0.04
CLN3-240ENST00000631023 ZNF324O75467 553 aaPredicted RBP14.77□□□□□ -0.04
CLN3-240ENST00000631023 FGF8P55075 233 aaPredicted RBP14.77□□□□□ -0.04
CLN3-240ENST00000631023 TCTAP57738 103 aa14.77□□□□□ -0.04
CLN3-240ENST00000631023 DAD1P61803 113 aa14.77□□□□□ -0.04
CLN3-240ENST00000631023 RNASE8Q8TDE3 154 aaKnown RBP14.77□□□□□ -0.04
CLN3-240ENST00000631023 NKX6-2Q9C056 277 aaPredicted RBP14.77□□□□□ -0.04
CLN3-240ENST00000631023 GNG5P63218 68 aa14.77□□□□□ -0.05
CLN3-240ENST00000631023 EIF5AL1Q6IS14 154 aaKnown RBP14.77□□□□□ -0.05
CLN3-240ENST00000631023 DPPA3Q6W0C5 159 aa14.77□□□□□ -0.05
CLN3-240ENST00000631023 TMPRSS5Q9H3S3 457 aa14.77□□□□□ -0.05
CLN3-240ENST00000631023 PLAC8L1A1L4L8 177 aa14.76□□□□□ -0.05
CLN3-240ENST00000631023 IGLL5B9A064 214 aa14.76□□□□□ -0.05
CLN3-240ENST00000631023 TCRAP04437 139 aa14.76□□□□□ -0.05
CLN3-240ENST00000631023 FAM213BQ8TBF2 198 aa14.76□□□□□ -0.05
CLN3-240ENST00000631023 LINC00467Q9BRT7 94 aa14.76□□□□□ -0.05
CLN3-240ENST00000631023 PLA2G2EQ9NZK7 142 aa14.76□□□□□ -0.05
CLN3-240ENST00000631023 EPDR1Q9UM22 224 aa14.76□□□□□ -0.05
CLN3-240ENST00000631023 GGTLC3B5MD39 225 aa14.75□□□□□ -0.05
CLN3-240ENST00000631023 FHITP49789 147 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 104.6 ms