RNA–Protein interactions for RNA: ENST00000622555.1

PTCHD3-202, Transcript of patched domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene PTCHD3, Length 1,720 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3-202ENST00000622555 CXCL1P09341 107 aa13.3□□□□□ -0.28
PTCHD3-202ENST00000622555 CNN1P51911 297 aaKnown RBP13.3□□□□□ -0.28
PTCHD3-202ENST00000622555 SMUG1Q53HV7 270 aa13.3□□□□□ -0.28
PTCHD3-202ENST00000622555 PRR31Q5SQ13 230 aa13.3□□□□□ -0.28
PTCHD3-202ENST00000622555 LINC00479Q96M42 142 aa13.3□□□□□ -0.28
PTCHD3-202ENST00000622555 TRAV34A0A0B4J273 112 aa13.3□□□□□ -0.28
PTCHD3-202ENST00000622555 DEFB1P60022 68 aa13.3□□□□□ -0.28
PTCHD3-202ENST00000622555 SERTM2A0A1B0GWG4 89 aa13.29□□□□□ -0.28
PTCHD3-202ENST00000622555 PFN1P07737 140 aaKnown RBP13.29□□□□□ -0.28
PTCHD3-202ENST00000622555 RPL35P42766 123 aaKnown RBP13.29□□□□□ -0.28
PTCHD3-202ENST00000622555 DEFB131AP59861 70 aa13.29□□□□□ -0.28
PTCHD3-202ENST00000622555 SGK494Q96LW2 274 aa13.29□□□□□ -0.28
PTCHD3-202ENST00000622555 GPR61Q9BZJ8 451 aa13.29□□□□□ -0.28
PTCHD3-202ENST00000622555 BIN3Q9NQY0 253 aa13.29□□□□□ -0.28
PTCHD3-202ENST00000622555 TRBV24-1A0A075B6N3 115 aa13.28□□□□□ -0.28
PTCHD3-202ENST00000622555 UBE2G1P62253 170 aa13.28□□□□□ -0.28
PTCHD3-202ENST00000622555 LINC01551Q86U37 167 aa13.28□□□□□ -0.28
PTCHD3-202ENST00000622555 ANAPC16Q96DE5 110 aa13.28□□□□□ -0.28
PTCHD3-202ENST00000622555 PYGO2Q9BRQ0 406 aa13.28□□□□□ -0.28
PTCHD3-202ENST00000622555 MAP6D1Q9H9H5 199 aa13.28□□□□□ -0.28
PTCHD3-202ENST00000622555 TRAV8-1A0A0A6YYK1 113 aa13.27□□□□□ -0.28
PTCHD3-202ENST00000622555 F6UB75 175 aa13.27□□□□□ -0.28
PTCHD3-202ENST00000622555 ZNF705DP0CH99 300 aaPredicted RBP13.27□□□□□ -0.28
PTCHD3-202ENST00000622555 ZNF705BP0CI00 300 aaPredicted RBP13.27□□□□□ -0.28
PTCHD3-202ENST00000622555 BEAN1Q3B7T3 259 aa13.27□□□□□ -0.28
PTCHD3-202ENST00000622555 ZFP82Q8N141 532 aa13.27□□□□□ -0.28
PTCHD3-202ENST00000622555 OR10J6PQ8NGY7 276 aa13.27□□□□□ -0.28
PTCHD3-202ENST00000622555 VGLL1Q99990 258 aa13.27□□□□□ -0.28
PTCHD3-202ENST00000622555 TRBV20OR9-2A0A075B6H5 130 aa13.27□□□□□ -0.29
PTCHD3-202ENST00000622555 TGIF2-C20orf24A0A0A6YYL0 155 aa13.27□□□□□ -0.29
PTCHD3-202ENST00000622555 RBAKDNA6NC62 111 aa13.27□□□□□ -0.29
PTCHD3-202ENST00000622555 WIPF1O43516 503 aa13.27□□□□□ -0.29
PTCHD3-202ENST00000622555 ERCC8Q13216 396 aa13.27□□□□□ -0.29
PTCHD3-202ENST00000622555 TMEM183BQ1AE95 376 aa13.27□□□□□ -0.29
PTCHD3-202ENST00000622555 TMEM75Q8N9X5 138 aa13.27□□□□□ -0.29
PTCHD3-202ENST00000622555 OR8A1Q8NGG7 326 aa13.27□□□□□ -0.29
PTCHD3-202ENST00000622555 FMC1Q96HJ9 113 aa13.27□□□□□ -0.29
PTCHD3-202ENST00000622555 KLF12Q9Y4X4 402 aa13.27□□□□□ -0.29
PTCHD3-202ENST00000622555 LY96Q9Y6Y9 160 aa13.27□□□□□ -0.29
PTCHD3-202ENST00000622555 URGCP-MRPS24S4R325 110 aa13.27□□□□□ -0.29
PTCHD3-202ENST00000622555 AGRNO00468 2067 aa13.26□□□□□ -0.29
PTCHD3-202ENST00000622555 S100A9P06702 114 aaKnown RBP13.26□□□□□ -0.29
PTCHD3-202ENST00000622555 HIST1H1AQ02539 215 aaPredicted RBP13.26□□□□□ -0.29
PTCHD3-202ENST00000622555 ODF3L2Q3SX64 289 aa13.26□□□□□ -0.29
PTCHD3-202ENST00000622555 OR11H12B2RN74 326 aa13.25□□□□□ -0.29
PTCHD3-202ENST00000622555 C9JCJ5 164 aa13.25□□□□□ -0.29
PTCHD3-202ENST00000622555 IGLV2-11P01706 119 aa13.25□□□□□ -0.29
PTCHD3-202ENST00000622555 OXLD1Q5BKU9 147 aa13.25□□□□□ -0.29
PTCHD3-202ENST00000622555 EBLN2Q6P2I7 272 aa13.25□□□□□ -0.29
PTCHD3-202ENST00000622555 PRNTQ86SH4 94 aa13.25□□□□□ -0.29
PTCHD3-202ENST00000622555 PSG8Q9UQ74 426 aa13.25□□□□□ -0.29
PTCHD3-202ENST00000622555 ANK2Q01484 3957 aa13.25□□□□□ -0.29
PTCHD3-202ENST00000622555 C5orf52A6NGY3 159 aa13.25□□□□□ -0.29
PTCHD3-202ENST00000622555 H7BYZ3 331 aa13.25□□□□□ -0.29
PTCHD3-202ENST00000622555 CD7P09564 240 aa13.25□□□□□ -0.29
PTCHD3-202ENST00000622555 RPS10P46783 165 aaKnown RBP13.25□□□□□ -0.29
PTCHD3-202ENST00000622555 CMC4P56277 68 aaPredicted RBP13.25□□□□□ -0.29
PTCHD3-202ENST00000622555 TAS2R60P59551 318 aa13.25□□□□□ -0.29
PTCHD3-202ENST00000622555 KRTAP21-3Q3LHN1 58 aa13.25□□□□□ -0.29
PTCHD3-202ENST00000622555 CENPWQ5EE01 88 aa13.25□□□□□ -0.29
PTCHD3-202ENST00000622555 GDF5OSQ5U4N7 250 aa13.25□□□□□ -0.29
PTCHD3-202ENST00000622555 FOXI2Q6ZQN5 318 aa13.25□□□□□ -0.29
PTCHD3-202ENST00000622555 Q86TA4 180 aa13.25□□□□□ -0.29
PTCHD3-202ENST00000622555 APRG1Q8IVJ8 170 aa13.25□□□□□ -0.29
PTCHD3-202ENST00000622555 FAM210BQ96KR6 192 aa13.25□□□□□ -0.29
PTCHD3-202ENST00000622555 SAV1Q9H4B6 383 aaPredicted RBP13.25□□□□□ -0.29
PTCHD3-202ENST00000622555 A0A0J9YX75 114 aa13.24□□□□□ -0.29
PTCHD3-202ENST00000622555 KNCNA6PVL3 124 aa13.24□□□□□ -0.29
PTCHD3-202ENST00000622555 GNG4P50150 75 aa13.24□□□□□ -0.29
PTCHD3-202ENST00000622555 ZNF124Q15973 351 aa13.24□□□□□ -0.29
PTCHD3-202ENST00000622555 TMEM78Q5T7P6 136 aa13.24□□□□□ -0.29
PTCHD3-202ENST00000622555 C9orf47Q6ZRZ4 202 aa13.24□□□□□ -0.29
PTCHD3-202ENST00000622555 Q8TAT8 98 aa13.24□□□□□ -0.29
PTCHD3-202ENST00000622555 AGPAT4-IT1Q9H0P7 198 aa13.24□□□□□ -0.29
PTCHD3-202ENST00000622555 FBLL1A6NHQ2 334 aaKnown RBP13.23□□□□□ -0.29
PTCHD3-202ENST00000622555 NPIPB6E9PJ23 425 aa13.23□□□□□ -0.29
PTCHD3-202ENST00000622555 ACTL10Q5JWF8 245 aa13.23□□□□□ -0.29
PTCHD3-202ENST00000622555 GTSCR1Q86UQ5 136 aa13.23□□□□□ -0.29
PTCHD3-202ENST00000622555 IGF2BP2-AS1Q96M15 143 aa13.23□□□□□ -0.29
PTCHD3-202ENST00000622555 ASCL2Q99929 193 aa13.23□□□□□ -0.29
PTCHD3-202ENST00000622555 PPP1R2P9O14990 202 aa13.22□□□□□ -0.29
PTCHD3-202ENST00000622555 BAGE2Q86Y30 109 aa13.22□□□□□ -0.29
PTCHD3-202ENST00000622555 OCC1Q8TAD7 63 aa13.22□□□□□ -0.29
PTCHD3-202ENST00000622555 TRBV6-1A0A0K0K1D8 114 aa13.22□□□□□ -0.29
PTCHD3-202ENST00000622555 PGPEP1LA6NFU8 196 aa13.22□□□□□ -0.29
PTCHD3-202ENST00000622555 PHOX2AO14813 284 aa13.22□□□□□ -0.29
PTCHD3-202ENST00000622555 LTAP01374 205 aa13.22□□□□□ -0.29
PTCHD3-202ENST00000622555 ZNF138P52744 262 aa13.22□□□□□ -0.29
PTCHD3-202ENST00000622555 NHLRC2Q8NBF2 726 aa13.22□□□□□ -0.29
PTCHD3-202ENST00000622555 LINC00477Q96M19 166 aa13.22□□□□□ -0.29
PTCHD3-202ENST00000622555 IMMP2LQ96T52 175 aa13.22□□□□□ -0.29
PTCHD3-202ENST00000622555 FAM110AQ9BQ89 295 aa13.22□□□□□ -0.29
PTCHD3-202ENST00000622555 PKD1L1Q8TDX9 2849 aa13.21□□□□□ -0.29
PTCHD3-202ENST00000622555 DUSP14O95147 198 aaKnown RBP13.21□□□□□ -0.3
PTCHD3-202ENST00000622555 OR4B1Q8NGF8 309 aa13.21□□□□□ -0.3
PTCHD3-202ENST00000622555 ZNF492Q9P255 531 aa13.21□□□□□ -0.3
PTCHD3-202ENST00000622555 UBE2CO00762 179 aa13.2□□□□□ -0.3
PTCHD3-202ENST00000622555 IGKV3-20P01619 116 aa13.2□□□□□ -0.3
PTCHD3-202ENST00000622555 HLA-DRB4P13762 266 aa13.2□□□□□ -0.3
PTCHD3-202ENST00000622555 SNRPEP62304 92 aaKnown RBP13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 444.7 ms