RNA–Protein interactions for RNA: ENST00000600026.5

LTBP4-227, Transcript of latent transforming growth factor beta binding protein 4, human

TSL 3

Gene LTBP4, Length 723 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LTBP4-227	ENST00000600026	HLA-DRB4	X5D2U9	266 aa		16.2	■□□□□ 0.18
LTBP4-227	ENST00000600026	AGRN	O00468	2067 aa		16.19	■□□□□ 0.18
LTBP4-227	ENST00000600026	FBLL1	A6NHQ2	334 aa	Known RBP	16.19	■□□□□ 0.18
LTBP4-227	ENST00000600026	ZNF705D	P0CH99	300 aa	Predicted RBP	16.19	■□□□□ 0.18
LTBP4-227	ENST00000600026	ZNF705B	P0CI00	300 aa	Predicted RBP	16.19	■□□□□ 0.18
LTBP4-227	ENST00000600026	CNN1	P51911	297 aa	Known RBP	16.19	■□□□□ 0.18
LTBP4-227	ENST00000600026	TMEM78	Q5T7P6	136 aa		16.19	■□□□□ 0.18
LTBP4-227	ENST00000600026	GDF5OS	Q5U4N7	250 aa		16.19	■□□□□ 0.18
LTBP4-227	ENST00000600026	C11orf52	Q96A22	123 aa		16.19	■□□□□ 0.18
LTBP4-227	ENST00000600026	LINC00477	Q96M19	166 aa		16.19	■□□□□ 0.18
LTBP4-227	ENST00000600026	LOC102724200	A0A096LPH7	203 aa	Predicted RBP	16.18	■□□□□ 0.18
LTBP4-227	ENST00000600026	NPIPB6	E9PJ23	425 aa		16.18	■□□□□ 0.18
LTBP4-227	ENST00000600026	TMEM250	H0YL14	139 aa		16.18	■□□□□ 0.18
LTBP4-227	ENST00000600026		H3BMM0	161 aa		16.18	■□□□□ 0.18
LTBP4-227	ENST00000600026	S100A9	P06702	114 aa	Known RBP	16.18	■□□□□ 0.18
LTBP4-227	ENST00000600026	UBE2G1	P62253	170 aa		16.18	■□□□□ 0.18
LTBP4-227	ENST00000600026	C9orf47	Q6ZRZ4	202 aa		16.18	■□□□□ 0.18
LTBP4-227	ENST00000600026	COMMD7	Q86VX2	200 aa		16.18	■□□□□ 0.18
LTBP4-227	ENST00000600026	OR4B1	Q8NGF8	309 aa		16.18	■□□□□ 0.18
LTBP4-227	ENST00000600026	TREM1	Q9NP99	234 aa		16.18	■□□□□ 0.18
LTBP4-227	ENST00000600026	PPP1R14D	Q9NXH3	145 aa		16.18	■□□□□ 0.18
LTBP4-227	ENST00000600026	ERCC8	Q13216	396 aa		16.17	■□□□□ 0.18
LTBP4-227	ENST00000600026	TMEM75	Q8N9X5	138 aa		16.17	■□□□□ 0.18
LTBP4-227	ENST00000600026	ASCL2	Q99929	193 aa		16.17	■□□□□ 0.18
LTBP4-227	ENST00000600026	VGLL1	Q99990	258 aa		16.17	■□□□□ 0.18
LTBP4-227	ENST00000600026	SRP19	P09132	144 aa	Known RBP	16.16	■□□□□ 0.18
LTBP4-227	ENST00000600026	RPL35A	P18077	110 aa	Known RBP	16.16	■□□□□ 0.18
LTBP4-227	ENST00000600026	SBSPON	Q8IVN8	264 aa		16.16	■□□□□ 0.18
LTBP4-227	ENST00000600026	C2CD4C	Q8TF44	421 aa		16.16	■□□□□ 0.18
LTBP4-227	ENST00000600026	FMC1	Q96HJ9	113 aa		16.16	■□□□□ 0.18
LTBP4-227	ENST00000600026	AGPAT4-IT1	Q9H0P7	198 aa		16.16	■□□□□ 0.18
LTBP4-227	ENST00000600026	IGKV3-20	P01619	116 aa		16.15	■□□□□ 0.18
LTBP4-227	ENST00000600026	ZNF138	P52744	262 aa		16.15	■□□□□ 0.18
LTBP4-227	ENST00000600026	CEBPG	P53567	150 aa		16.15	■□□□□ 0.18
LTBP4-227	ENST00000600026	SRSF3	P84103	164 aa	Known RBP	16.15	■□□□□ 0.18
LTBP4-227	ENST00000600026	FLI1	Q01543	452 aa	Predicted RBP	16.15	■□□□□ 0.18
LTBP4-227	ENST00000600026	UQCC3	Q6UW78	93 aa		16.15	■□□□□ 0.18
LTBP4-227	ENST00000600026	PSG8	Q9UQ74	426 aa		16.15	■□□□□ 0.18
LTBP4-227	ENST00000600026	HUWE1	Q7Z6Z7	4374 aa	Known RBP	16.15	■□□□□ 0.18
LTBP4-227	ENST00000600026	TRAV34	A0A0B4J273	112 aa		16.14	■□□□□ 0.17
LTBP4-227	ENST00000600026	TMEM183B	Q1AE95	376 aa		16.14	■□□□□ 0.17
LTBP4-227	ENST00000600026	TRPT1	Q86TN4	253 aa	Known RBP	16.14	■□□□□ 0.17
LTBP4-227	ENST00000600026	LINC00479	Q96M42	142 aa		16.14	■□□□□ 0.17
LTBP4-227	ENST00000600026	CLUHP3	Q96NS8	147 aa		16.14	■□□□□ 0.17
LTBP4-227	ENST00000600026	SLC35B3	Q9H1N7	401 aa		16.14	■□□□□ 0.17
LTBP4-227	ENST00000600026	ZNF492	Q9P255	531 aa		16.14	■□□□□ 0.17
LTBP4-227	ENST00000600026	KLF12	Q9Y4X4	402 aa		16.14	■□□□□ 0.17
LTBP4-227	ENST00000600026	TRAV8-1	A0A0A6YYK1	113 aa		16.13	■□□□□ 0.17
LTBP4-227	ENST00000600026		A8MTW9	85 aa		16.13	■□□□□ 0.17
LTBP4-227	ENST00000600026	PRNT	Q86SH4	94 aa		16.13	■□□□□ 0.17
LTBP4-227	ENST00000600026	SGK494	Q96LW2	274 aa		16.13	■□□□□ 0.17
LTBP4-227	ENST00000600026	NDFIP1	Q9BT67	221 aa		16.13	■□□□□ 0.17
LTBP4-227	ENST00000600026	LENEP	Q9Y5L5	61 aa		16.13	■□□□□ 0.17
LTBP4-227	ENST00000600026	TRBV6-1	A0A0K0K1D8	114 aa		16.12	■□□□□ 0.17
LTBP4-227	ENST00000600026	RPL35	P42766	123 aa	Known RBP	16.12	■□□□□ 0.17
LTBP4-227	ENST00000600026	TAS2R60	P59551	318 aa		16.12	■□□□□ 0.17
LTBP4-227	ENST00000600026	NUTF2	P61970	127 aa	Known RBP	16.12	■□□□□ 0.17
LTBP4-227	ENST00000600026	EIF4E3	Q8N5X7	224 aa	Known RBP	16.12	■□□□□ 0.17
LTBP4-227	ENST00000600026	ODF3	Q96PU9	254 aa		16.12	■□□□□ 0.17
LTBP4-227	ENST00000600026	IGLV2-11	P01706	119 aa		16.11	■□□□□ 0.17
LTBP4-227	ENST00000600026	CT45A10	P0DMU9	189 aa		16.11	■□□□□ 0.17
LTBP4-227	ENST00000600026	TSPO	P30536	169 aa		16.11	■□□□□ 0.17
LTBP4-227	ENST00000600026	LEP	P41159	167 aa		16.11	■□□□□ 0.17
LTBP4-227	ENST00000600026	APOC4	P55056	127 aa		16.11	■□□□□ 0.17
LTBP4-227	ENST00000600026	ZNF674	Q2M3X9	581 aa		16.11	■□□□□ 0.17
LTBP4-227	ENST00000600026		Q86TA4	180 aa		16.11	■□□□□ 0.17
LTBP4-227	ENST00000600026		Q8TAT8	98 aa		16.11	■□□□□ 0.17
LTBP4-227	ENST00000600026	KIR2DL5B	A0A0G2JN68	375 aa		16.1	■□□□□ 0.17
LTBP4-227	ENST00000600026	KIR2DL5B	A0A0G2JPC4	375 aa		16.1	■□□□□ 0.17
LTBP4-227	ENST00000600026	TRBV7-9	A0A0J9YWB2	115 aa		16.1	■□□□□ 0.17
LTBP4-227	ENST00000600026		C9JQL5	133 aa		16.1	■□□□□ 0.17
LTBP4-227	ENST00000600026	NDUFA5	Q16718	116 aa		16.1	■□□□□ 0.17
LTBP4-227	ENST00000600026	SAPCD1	Q5SSQ6	148 aa		16.1	■□□□□ 0.17
LTBP4-227	ENST00000600026	MORN3	Q6PF18	240 aa	Predicted RBP	16.1	■□□□□ 0.17
LTBP4-227	ENST00000600026	KIR2DL5A	Q8N109	375 aa		16.1	■□□□□ 0.17
LTBP4-227	ENST00000600026	KIR2DL5B	Q8NHK3	375 aa		16.1	■□□□□ 0.17
LTBP4-227	ENST00000600026	DERL1	Q9BUN8	251 aa		16.1	■□□□□ 0.17
LTBP4-227	ENST00000600026	PARL	Q9H300	379 aa		16.1	■□□□□ 0.17
LTBP4-227	ENST00000600026	ZFP30	Q9Y2G7	519 aa		16.1	■□□□□ 0.17
LTBP4-227	ENST00000600026	KMT2C	Q8NEZ4	4911 aa	Known RBP	16.1	■□□□□ 0.17
LTBP4-227	ENST00000600026	NBEAL2	Q6ZNJ1	2754 aa		16.09	■□□□□ 0.17
LTBP4-227	ENST00000600026	AMTN	Q6UX39	209 aa		16.09	■□□□□ 0.17
LTBP4-227	ENST00000600026	TM2D3	Q9BRN9	247 aa		16.09	■□□□□ 0.17
LTBP4-227	ENST00000600026	RYR3	Q15413	4870 aa		16.08	■□□□□ 0.17
LTBP4-227	ENST00000600026	AMBP	P02760	352 aa		16.08	■□□□□ 0.16
LTBP4-227	ENST00000600026	FAM74A3	Q4VXF1	159 aa		16.08	■□□□□ 0.16
LTBP4-227	ENST00000600026	BAGE2	Q86Y30	109 aa		16.08	■□□□□ 0.16
LTBP4-227	ENST00000600026	SMIM7	Q9BQ49	75 aa		16.08	■□□□□ 0.16
LTBP4-227	ENST00000600026	ZNF727	A8MUV8	499 aa		16.07	■□□□□ 0.16
LTBP4-227	ENST00000600026	LTA	P01374	205 aa		16.07	■□□□□ 0.16
LTBP4-227	ENST00000600026	SFTA3	P0C7M3	94 aa		16.07	■□□□□ 0.16
LTBP4-227	ENST00000600026	CDKN1B	P46527	198 aa		16.07	■□□□□ 0.16
LTBP4-227	ENST00000600026	GNG4	P50150	75 aa		16.07	■□□□□ 0.16
LTBP4-227	ENST00000600026	SOHLH1	Q5JUK2	328 aa		16.07	■□□□□ 0.16
LTBP4-227	ENST00000600026	FAM19A4	Q96LR4	140 aa		16.07	■□□□□ 0.16
LTBP4-227	ENST00000600026	CSTL1	Q9H114	145 aa		16.07	■□□□□ 0.16
LTBP4-227	ENST00000600026	NHLRC4	P0CG21	123 aa	Predicted RBP	16.06	■□□□□ 0.16
LTBP4-227	ENST00000600026	CRISP2	P16562	243 aa		16.06	■□□□□ 0.16
LTBP4-227	ENST00000600026	SPINK13	Q1W4C9	94 aa		16.06	■□□□□ 0.16
LTBP4-227	ENST00000600026	CENPW	Q5EE01	88 aa		16.06	■□□□□ 0.16

Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms