RNA–Protein interactions for RNA: ENST00000597649.5

SHKBP1-215, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 781 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-215ENST00000597649 C1QTNF4Q9BXJ3 329 aa11.68□□□□□ -0.54
SHKBP1-215ENST00000597649 ZNF586Q9NXT0 402 aa11.68□□□□□ -0.54
SHKBP1-215ENST00000597649 SOCS3O14543 225 aa11.67□□□□□ -0.54
SHKBP1-215ENST00000597649 CXorf1O96002 111 aa11.67□□□□□ -0.54
SHKBP1-215ENST00000597649 NBEAP1P0C6P0 100 aa11.67□□□□□ -0.54
SHKBP1-215ENST00000597649 STAG3L2P0CL84 134 aa11.67□□□□□ -0.54
SHKBP1-215ENST00000597649 STAG3L3P0CL85 134 aa11.67□□□□□ -0.54
SHKBP1-215ENST00000597649 RAB5CP51148 216 aa11.67□□□□□ -0.54
SHKBP1-215ENST00000597649 NUTF2P61970 127 aaKnown RBP11.67□□□□□ -0.54
SHKBP1-215ENST00000597649 C1orf134Q5TEV5 83 aa11.67□□□□□ -0.54
SHKBP1-215ENST00000597649 FAM210BQ96KR6 192 aa11.67□□□□□ -0.54
SHKBP1-215ENST00000597649 C17orf77Q96MU5 243 aa11.67□□□□□ -0.54
SHKBP1-215ENST00000597649 DKK2Q9UBU2 259 aa11.67□□□□□ -0.54
SHKBP1-215ENST00000597649 NACAE9PAV3 2078 aa11.66□□□□□ -0.54
SHKBP1-215ENST00000597649 TRBV19A0A075B6N1 114 aa11.66□□□□□ -0.54
SHKBP1-215ENST00000597649 ARL14EPLP0DKL9 152 aa11.66□□□□□ -0.54
SHKBP1-215ENST00000597649 FXYD7P58549 80 aa11.66□□□□□ -0.54
SHKBP1-215ENST00000597649 PSG9Q00887 426 aa11.66□□□□□ -0.54
SHKBP1-215ENST00000597649 RNF212Q495C1 297 aa11.66□□□□□ -0.54
SHKBP1-215ENST00000597649 GDF5OSQ5U4N7 250 aa11.66□□□□□ -0.54
SHKBP1-215ENST00000597649 IGFL4Q6B9Z1 124 aa11.66□□□□□ -0.54
SHKBP1-215ENST00000597649 FXYD5Q96DB9 178 aa11.66□□□□□ -0.54
SHKBP1-215ENST00000597649 PHYHIPLQ96FC7 376 aa11.66□□□□□ -0.54
SHKBP1-215ENST00000597649 AAMDCQ9H7C9 122 aa11.66□□□□□ -0.54
SHKBP1-215ENST00000597649 MAP1LC3B2A6NCE7 125 aa11.65□□□□□ -0.54
SHKBP1-215ENST00000597649 ZNF253O75346 499 aa11.65□□□□□ -0.54
SHKBP1-215ENST00000597649 IGKV3-20P01619 116 aa11.65□□□□□ -0.54
SHKBP1-215ENST00000597649 HLA-DRB4P13762 266 aa11.65□□□□□ -0.54
SHKBP1-215ENST00000597649 FHITP49789 147 aa11.65□□□□□ -0.54
SHKBP1-215ENST00000597649 TNP2Q05952 138 aa11.65□□□□□ -0.54
SHKBP1-215ENST00000597649 PDE6HQ13956 83 aa11.65□□□□□ -0.54
SHKBP1-215ENST00000597649 ZNF726P1Q15940 193 aa11.65□□□□□ -0.54
SHKBP1-215ENST00000597649 SOHLH1Q5JUK2 328 aa11.65□□□□□ -0.54
SHKBP1-215ENST00000597649 FAM222AQ5U5X8 452 aa11.65□□□□□ -0.54
SHKBP1-215ENST00000597649 ZNF738Q8NE65 137 aa11.65□□□□□ -0.54
SHKBP1-215ENST00000597649 ZNF503Q96F45 646 aa11.65□□□□□ -0.54
SHKBP1-215ENST00000597649 MAP1LC3BQ9GZQ8 125 aa11.65□□□□□ -0.54
SHKBP1-215ENST00000597649 ZNF331Q9NQX6 463 aaPredicted RBP11.65□□□□□ -0.54
SHKBP1-215ENST00000597649 HLA-DRB4X5D2U9 266 aa11.65□□□□□ -0.54
SHKBP1-215ENST00000597649 IGHV3OR16-12A0A075B7B8 117 aa11.64□□□□□ -0.55
SHKBP1-215ENST00000597649 TRAV8-2A0A0B4J237 113 aa11.64□□□□□ -0.55
SHKBP1-215ENST00000597649 TMEM189A5PLL7 270 aa11.64□□□□□ -0.55
SHKBP1-215ENST00000597649 SLC17A3O00476 420 aa11.64□□□□□ -0.55
SHKBP1-215ENST00000597649 HTN3P15516 51 aa11.64□□□□□ -0.55
SHKBP1-215ENST00000597649 GCHFRP30047 84 aa11.64□□□□□ -0.55
SHKBP1-215ENST00000597649 SULT1A2P50226 295 aa11.64□□□□□ -0.55
SHKBP1-215ENST00000597649 ALKAL2Q6UX46 152 aa11.64□□□□□ -0.55
SHKBP1-215ENST00000597649 SSX7Q7RTT5 188 aa11.64□□□□□ -0.55
SHKBP1-215ENST00000597649 RNF182Q8N6D2 247 aa11.64□□□□□ -0.55
SHKBP1-215ENST00000597649 SFT2D1Q8WV19 159 aa11.64□□□□□ -0.55
SHKBP1-215ENST00000597649 SAT2Q96F10 170 aaPredicted RBP11.64□□□□□ -0.55
SHKBP1-215ENST00000597649 NIPSNAP3BQ9BS92 247 aa11.64□□□□□ -0.55
SHKBP1-215ENST00000597649 TMEM167BQ9NRX6 74 aa11.64□□□□□ -0.55
SHKBP1-215ENST00000597649 SMIM9A6NGZ8 99 aa11.63□□□□□ -0.55
SHKBP1-215ENST00000597649 H2AFB1P0C5Y9 115 aa11.63□□□□□ -0.55
SHKBP1-215ENST00000597649 FGF8P55075 233 aaPredicted RBP11.63□□□□□ -0.55
SHKBP1-215ENST00000597649 RANP62826 216 aaKnown RBP11.63□□□□□ -0.55
SHKBP1-215ENST00000597649 PSG3Q16557 428 aa11.63□□□□□ -0.55
SHKBP1-215ENST00000597649 EBLN2Q6P2I7 272 aa11.63□□□□□ -0.55
SHKBP1-215ENST00000597649 C20orf173Q96LM9 149 aa11.63□□□□□ -0.55
SHKBP1-215ENST00000597649 C16orf90A8MZG2 172 aa11.62□□□□□ -0.55
SHKBP1-215ENST00000597649 TEX46H3BTG2 121 aa11.62□□□□□ -0.55
SHKBP1-215ENST00000597649 CDK2AP2O75956 126 aa11.62□□□□□ -0.55
SHKBP1-215ENST00000597649 NDUFB4O95168 129 aa11.62□□□□□ -0.55
SHKBP1-215ENST00000597649 FAM74A1Q5RGS3 127 aa11.62□□□□□ -0.55
SHKBP1-215ENST00000597649 TMEM88Q6PEY1 159 aa11.62□□□□□ -0.55
SHKBP1-215ENST00000597649 MAPKAPK5-AS1Q8N8E1 139 aa11.62□□□□□ -0.55
SHKBP1-215ENST00000597649 MBD3L1Q8WWY6 194 aa11.62□□□□□ -0.55
SHKBP1-215ENST00000597649 PRELID1Q9Y255 219 aa11.62□□□□□ -0.55
SHKBP1-215ENST00000597649 A0A1B0GV50 99 aa11.61□□□□□ -0.55
SHKBP1-215ENST00000597649 ICAM4Q14773 271 aa11.61□□□□□ -0.55
SHKBP1-215ENST00000597649 C1orf158Q8N1D5 194 aa11.61□□□□□ -0.55
SHKBP1-215ENST00000597649 LYPD1Q8N2G4 141 aa11.61□□□□□ -0.55
SHKBP1-215ENST00000597649 EXOC3-AS1Q8N2X6 119 aa11.61□□□□□ -0.55
SHKBP1-215ENST00000597649 RPUSD4Q96CM3 377 aaKnown RBP11.61□□□□□ -0.55
SHKBP1-215ENST00000597649 CSN1S1P47710 185 aa11.6□□□□□ -0.55
SHKBP1-215ENST00000597649 FOXI2Q6ZQN5 318 aa11.6□□□□□ -0.55
SHKBP1-215ENST00000597649 CMTM2Q8TAZ6 248 aa11.6□□□□□ -0.55
SHKBP1-215ENST00000597649 SLC35B3Q9H1N7 401 aa11.6□□□□□ -0.55
SHKBP1-215ENST00000597649 Q9H3A6 140 aa11.6□□□□□ -0.55
SHKBP1-215ENST00000597649 TMPRSS5Q9H3S3 457 aa11.6□□□□□ -0.55
SHKBP1-215ENST00000597649 SAV1Q9H4B6 383 aaPredicted RBP11.6□□□□□ -0.55
SHKBP1-215ENST00000597649 PGPA6NDG6 321 aa11.59□□□□□ -0.55
SHKBP1-215ENST00000597649 HBE1P02100 147 aa11.59□□□□□ -0.55
SHKBP1-215ENST00000597649 BLOC1S1P78537 153 aa11.59□□□□□ -0.55
SHKBP1-215ENST00000597649 OR4B1Q8NGF8 309 aa11.59□□□□□ -0.55
SHKBP1-215ENST00000597649 MRPL53Q96EL3 112 aaKnown RBP11.59□□□□□ -0.55
SHKBP1-215ENST00000597649 OTORQ9NRC9 128 aa11.59□□□□□ -0.55
SHKBP1-215ENST00000597649 YTHDF2Q9Y5A9 579 aaKnown RBP11.59□□□□□ -0.55
SHKBP1-215ENST00000597649 F6UB75 175 aa11.58□□□□□ -0.56
SHKBP1-215ENST00000597649 DUSP14O95147 198 aaKnown RBP11.58□□□□□ -0.56
SHKBP1-215ENST00000597649 IFNA7P01567 189 aa11.58□□□□□ -0.56
SHKBP1-215ENST00000597649 UBE2G2P60604 165 aa11.58□□□□□ -0.56
SHKBP1-215ENST00000597649 HIST1H1AQ02539 215 aaPredicted RBP11.58□□□□□ -0.56
SHKBP1-215ENST00000597649 OR10J6PQ8NGY7 276 aa11.58□□□□□ -0.56
SHKBP1-215ENST00000597649 SUN5Q8TC36 379 aa11.58□□□□□ -0.56
SHKBP1-215ENST00000597649 RXFP4Q8TDU9 374 aa11.58□□□□□ -0.56
SHKBP1-215ENST00000597649 CLUHP3Q96NS8 147 aa11.58□□□□□ -0.56
SHKBP1-215ENST00000597649 PPP1R14DQ9NXH3 145 aa11.58□□□□□ -0.56
SHKBP1-215ENST00000597649 FAT1Q14517 4588 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 87.1 ms