RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 BCL2L11O43521 198 aa10.8□□□□□ -0.68
UPF1-202ENST00000594243 SLC25A5P05141 298 aaKnown RBP10.8□□□□□ -0.68
UPF1-202ENST00000594243 EMP1P54849 157 aa10.8□□□□□ -0.68
UPF1-202ENST00000594243 TAS2R60P59551 318 aa10.8□□□□□ -0.68
UPF1-202ENST00000594243 EIF5AP63241 154 aaKnown RBP10.8□□□□□ -0.68
UPF1-202ENST00000594243 TMEM167BQ9NRX6 74 aa10.8□□□□□ -0.68
UPF1-202ENST00000594243 IGKV2-40A0A087WW87 121 aaPredicted RBP10.79□□□□□ -0.68
UPF1-202ENST00000594243 CTXND1A0A1B0GTU2 59 aa10.79□□□□□ -0.68
UPF1-202ENST00000594243 TEX48A0A1B0GUV7 120 aa10.79□□□□□ -0.68
UPF1-202ENST00000594243 ZNF705GA8MUZ8 300 aaPredicted RBP10.79□□□□□ -0.68
UPF1-202ENST00000594243 DIRC3C9JPN6 131 aa10.79□□□□□ -0.68
UPF1-202ENST00000594243 PFDN1O60925 122 aa10.79□□□□□ -0.68
UPF1-202ENST00000594243 IGKV2D-40P01614 121 aaPredicted RBP10.79□□□□□ -0.68
UPF1-202ENST00000594243 NMBP08949 121 aa10.79□□□□□ -0.68
UPF1-202ENST00000594243 SEC11BP0C7V7 166 aa10.79□□□□□ -0.68
UPF1-202ENST00000594243 GCHFRP30047 84 aa10.79□□□□□ -0.68
UPF1-202ENST00000594243 GFI1BQ5VTD9 330 aa10.79□□□□□ -0.68
UPF1-202ENST00000594243 TMUB2Q71RG4 321 aa10.79□□□□□ -0.68
UPF1-202ENST00000594243 SUN5Q8TC36 379 aa10.79□□□□□ -0.68
UPF1-202ENST00000594243 FAM19A4Q96LR4 140 aa10.79□□□□□ -0.68
UPF1-202ENST00000594243 HYLS1Q96M11 299 aa10.79□□□□□ -0.68
UPF1-202ENST00000594243 VGLL1Q99990 258 aa10.79□□□□□ -0.68
UPF1-202ENST00000594243 ZNF471Q9BX82 626 aaPredicted RBP10.79□□□□□ -0.68
UPF1-202ENST00000594243 ZNF492Q9P255 531 aa10.79□□□□□ -0.68
UPF1-202ENST00000594243 TRBV7-9A0A0J9YWB2 115 aa10.78□□□□□ -0.68
UPF1-202ENST00000594243 J3KRW8 73 aa10.78□□□□□ -0.68
UPF1-202ENST00000594243 HTN1P15515 57 aa10.78□□□□□ -0.68
UPF1-202ENST00000594243 ZNF138P52744 262 aa10.78□□□□□ -0.68
UPF1-202ENST00000594243 KIR3DS1Q14943 382 aa10.78□□□□□ -0.68
UPF1-202ENST00000594243 NIPSNAP3BQ9BS92 247 aa10.78□□□□□ -0.68
UPF1-202ENST00000594243 hCG_2014768A0A024R1R8 64 aa10.77□□□□□ -0.69
UPF1-202ENST00000594243 TRAV12-3A0A0B4J271 114 aa10.77□□□□□ -0.69
UPF1-202ENST00000594243 GPX1P07203 203 aa10.77□□□□□ -0.69
UPF1-202ENST00000594243 CRISP2P16562 243 aa10.77□□□□□ -0.69
UPF1-202ENST00000594243 AKAP14Q86UN6 197 aa10.77□□□□□ -0.69
UPF1-202ENST00000594243 CCDC28AQ8IWP9 274 aa10.77□□□□□ -0.69
UPF1-202ENST00000594243 IQCF2Q8IXL9 164 aa10.77□□□□□ -0.69
UPF1-202ENST00000594243 DKK2Q9UBU2 259 aa10.77□□□□□ -0.69
UPF1-202ENST00000594243 CELA1Q9UNI1 258 aa10.77□□□□□ -0.69
UPF1-202ENST00000594243 YTHDF2Q9Y5A9 579 aaKnown RBP10.77□□□□□ -0.69
UPF1-202ENST00000594243 SACSQ9NZJ4 4579 aa10.76□□□□□ -0.69
UPF1-202ENST00000594243 TRAV10A0A0B4J240 114 aa10.76□□□□□ -0.69
UPF1-202ENST00000594243 KLLNB2CW77 178 aa10.76□□□□□ -0.69
UPF1-202ENST00000594243 UMAD1C9J7I0 102 aa10.76□□□□□ -0.69
UPF1-202ENST00000594243 C1QBP02746 253 aa10.76□□□□□ -0.69
UPF1-202ENST00000594243 PRM2P04554 102 aa10.76□□□□□ -0.69
UPF1-202ENST00000594243 TPT1P13693 172 aaKnown RBP10.76□□□□□ -0.69
UPF1-202ENST00000594243 AZU1P20160 251 aa10.76□□□□□ -0.69
UPF1-202ENST00000594243 ZNF726P1Q15940 193 aa10.76□□□□□ -0.69
UPF1-202ENST00000594243 C12orf74Q32Q52 190 aa10.76□□□□□ -0.69
UPF1-202ENST00000594243 FAM222AQ5U5X8 452 aa10.76□□□□□ -0.69
UPF1-202ENST00000594243 ZNF493Q6ZR52 646 aa10.76□□□□□ -0.69
UPF1-202ENST00000594243 Q6ZTC4 211 aa10.76□□□□□ -0.69
UPF1-202ENST00000594243 SSX7Q7RTT5 188 aa10.76□□□□□ -0.69
UPF1-202ENST00000594243 C2CD4CQ8TF44 421 aa10.76□□□□□ -0.69
UPF1-202ENST00000594243 TMED6Q8WW62 240 aa10.76□□□□□ -0.69
UPF1-202ENST00000594243 C16orf74Q96GX8 76 aa10.76□□□□□ -0.69
UPF1-202ENST00000594243 PYGO2Q9BRQ0 406 aa10.76□□□□□ -0.69
UPF1-202ENST00000594243 RPH3ALQ9UNE2 315 aa10.76□□□□□ -0.69
UPF1-202ENST00000594243 LENEPQ9Y5L5 61 aa10.76□□□□□ -0.69
UPF1-202ENST00000594243 SERTM2A0A1B0GWG4 89 aa10.75□□□□□ -0.69
UPF1-202ENST00000594243 A0A1W2PRE2 83 aa10.75□□□□□ -0.69
UPF1-202ENST00000594243 C7orf71A4D174 169 aa10.75□□□□□ -0.69
UPF1-202ENST00000594243 RNASE4P34096 147 aaKnown RBP10.75□□□□□ -0.69
UPF1-202ENST00000594243 SUMO1P63165 101 aaKnown RBP10.75□□□□□ -0.69
UPF1-202ENST00000594243 LGALSLQ3ZCW2 172 aaPredicted RBP10.75□□□□□ -0.69
UPF1-202ENST00000594243 STOML3Q8TAV4 291 aa10.75□□□□□ -0.69
UPF1-202ENST00000594243 LYRM9A8MSI8 78 aa10.74□□□□□ -0.69
UPF1-202ENST00000594243 K7EQM0 130 aa10.74□□□□□ -0.69
UPF1-202ENST00000594243 ZNF324O75467 553 aaPredicted RBP10.74□□□□□ -0.69
UPF1-202ENST00000594243 CD300CQ08708 224 aa10.74□□□□□ -0.69
UPF1-202ENST00000594243 C5orf17Q8NAS9 161 aa10.74□□□□□ -0.69
UPF1-202ENST00000594243 TMEM263Q8WUH6 116 aaKnown RBP10.74□□□□□ -0.69
UPF1-202ENST00000594243 NKX6-2Q9C056 277 aaPredicted RBP10.74□□□□□ -0.69
UPF1-202ENST00000594243 RYR2Q92736 4967 aa10.74□□□□□ -0.69
UPF1-202ENST00000594243 MAP1LC3B2A6NCE7 125 aa10.73□□□□□ -0.69
UPF1-202ENST00000594243 TCTAP57738 103 aa10.73□□□□□ -0.69
UPF1-202ENST00000594243 BTN1A1Q13410 526 aa10.73□□□□□ -0.69
UPF1-202ENST00000594243 EIF5AL1Q6IS14 154 aaKnown RBP10.73□□□□□ -0.69
UPF1-202ENST00000594243 DPPA3Q6W0C5 159 aa10.73□□□□□ -0.69
UPF1-202ENST00000594243 GOLT1AQ6ZVE7 132 aa10.73□□□□□ -0.69
UPF1-202ENST00000594243 ZNF767PQ75MW2 155 aa10.73□□□□□ -0.69
UPF1-202ENST00000594243 ZFAND2AQ8N6M9 145 aa10.73□□□□□ -0.69
UPF1-202ENST00000594243 Q8TAT8 98 aa10.73□□□□□ -0.69
UPF1-202ENST00000594243 MAP1LC3BQ9GZQ8 125 aa10.73□□□□□ -0.69
UPF1-202ENST00000594243 EPDR1Q9UM22 224 aa10.73□□□□□ -0.69
UPF1-202ENST00000594243 TIMM8BQ9Y5J9 83 aaPredicted RBP10.73□□□□□ -0.69
UPF1-202ENST00000594243 CSMD3Q7Z407 3707 aa10.72□□□□□ -0.69
UPF1-202ENST00000594243 DEFB131BA0A096LNP1 70 aa10.72□□□□□ -0.69
UPF1-202ENST00000594243 LCE6AA0A183 80 aa10.72□□□□□ -0.69
UPF1-202ENST00000594243 TCRAP04437 139 aa10.72□□□□□ -0.69
UPF1-202ENST00000594243 FGF8P55075 233 aaPredicted RBP10.72□□□□□ -0.69
UPF1-202ENST00000594243 DAD1P61803 113 aa10.72□□□□□ -0.69
UPF1-202ENST00000594243 GNG5P63218 68 aa10.72□□□□□ -0.69
UPF1-202ENST00000594243 RNASE8Q8TDE3 154 aaKnown RBP10.72□□□□□ -0.69
UPF1-202ENST00000594243 LINC00467Q9BRT7 94 aa10.72□□□□□ -0.69
UPF1-202ENST00000594243 TMPRSS5Q9H3S3 457 aa10.72□□□□□ -0.69
UPF1-202ENST00000594243 TENM2Q9NT68 2774 aa10.72□□□□□ -0.69
UPF1-202ENST00000594243 PLAC8L1A1L4L8 177 aa10.71□□□□□ -0.69
UPF1-202ENST00000594243 IGLL5B9A064 214 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 76 ms