RNA–Protein interactions for RNA: ENST00000582092.1

SS18-220, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 215 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-220ENST00000582092 OR2D3Q8NGH3 330 aa7.11□□□□□ -1.27
SS18-220ENST00000582092 OR10J6PQ8NGY7 276 aa7.11□□□□□ -1.27
SS18-220ENST00000582092 TSKUQ8WUA8 353 aa7.11□□□□□ -1.27
SS18-220ENST00000582092 MRPL53Q96EL3 112 aaKnown RBP7.11□□□□□ -1.27
SS18-220ENST00000582092 SMPXQ9UHP9 88 aa7.11□□□□□ -1.27
SS18-220ENST00000582092 TMEM189A5PLL7 270 aa7.1□□□□□ -1.27
SS18-220ENST00000582092 ZNF705FA8MVS1 300 aaPredicted RBP7.1□□□□□ -1.27
SS18-220ENST00000582092 OVOL1O14753 267 aa7.1□□□□□ -1.27
SS18-220ENST00000582092 SPINK4O60575 86 aa7.1□□□□□ -1.27
SS18-220ENST00000582092 MT-ND6P03923 174 aa7.1□□□□□ -1.27
SS18-220ENST00000582092 TRGC1P0CF51 173 aa7.1□□□□□ -1.27
SS18-220ENST00000582092 RPS20P60866 119 aaKnown RBP7.1□□□□□ -1.27
SS18-220ENST00000582092 PAFAH1B2P68402 229 aa7.1□□□□□ -1.27
SS18-220ENST00000582092 SMUG1Q53HV7 270 aa7.1□□□□□ -1.27
SS18-220ENST00000582092 CT83Q5H943 113 aa7.1□□□□□ -1.27
SS18-220ENST00000582092 FAM162BQ5T6X4 162 aa7.1□□□□□ -1.27
SS18-220ENST00000582092 UNQ9165/PRO28630Q6UXU0 137 aa7.1□□□□□ -1.27
SS18-220ENST00000582092 TCF24Q7RTU0 167 aa7.1□□□□□ -1.27
SS18-220ENST00000582092 GLMPQ8WWB7 406 aa7.1□□□□□ -1.27
SS18-220ENST00000582092 MLST8Q9BVC4 326 aa7.1□□□□□ -1.27
SS18-220ENST00000582092 PPP1R14DQ9NXH3 145 aa7.1□□□□□ -1.27
SS18-220ENST00000582092 CUBNO60494 3623 aa7.09□□□□□ -1.27
SS18-220ENST00000582092 IGKV3-7A0A075B6H7 116 aa7.09□□□□□ -1.27
SS18-220ENST00000582092 SNURFLB1AK76 121 aa7.09□□□□□ -1.27
SS18-220ENST00000582092 S100A8P05109 93 aa7.09□□□□□ -1.27
SS18-220ENST00000582092 MRPL54Q6P161 138 aaKnown RBP7.09□□□□□ -1.27
SS18-220ENST00000582092 RASL11AQ6T310 242 aa7.09□□□□□ -1.27
SS18-220ENST00000582092 C10orf99Q6UWK7 81 aa7.09□□□□□ -1.27
SS18-220ENST00000582092 RNF182Q8N6D2 247 aa7.09□□□□□ -1.27
SS18-220ENST00000582092 GNB1LQ9BYB4 327 aa7.09□□□□□ -1.27
SS18-220ENST00000582092 GFRA4Q9GZZ7 299 aa7.09□□□□□ -1.27
SS18-220ENST00000582092 NRN1Q9NPD7 142 aa7.09□□□□□ -1.27
SS18-220ENST00000582092 PEMTQ9UBM1 199 aa7.09□□□□□ -1.27
SS18-220ENST00000582092 RNF114Q9Y508 228 aa7.09□□□□□ -1.27
SS18-220ENST00000582092 IGHV4OR15-8A0A075B7B6 117 aa7.08□□□□□ -1.28
SS18-220ENST00000582092 A0A087WW49 117 aa7.08□□□□□ -1.28
SS18-220ENST00000582092 FAM231BA6NCW3 169 aa7.08□□□□□ -1.28
SS18-220ENST00000582092 FABP5P3A8MUU1 101 aa7.08□□□□□ -1.28
SS18-220ENST00000582092 HIGD1CA8MV81 97 aa7.08□□□□□ -1.28
SS18-220ENST00000582092 LINC01619G3V211 115 aa7.08□□□□□ -1.28
SS18-220ENST00000582092 LGALS9O00182 355 aa7.08□□□□□ -1.28
SS18-220ENST00000582092 HIST1H2BKO60814 126 aa7.08□□□□□ -1.28
SS18-220ENST00000582092 IGLV2-11P01706 119 aa7.08□□□□□ -1.28
SS18-220ENST00000582092 HLA-DQA1P01909 254 aa7.08□□□□□ -1.28
SS18-220ENST00000582092 HIST1H2BJP06899 126 aa7.08□□□□□ -1.28
SS18-220ENST00000582092 HIST1H2BOP23527 126 aa7.08□□□□□ -1.28
SS18-220ENST00000582092 HLA-DMBP28068 263 aa7.08□□□□□ -1.28
SS18-220ENST00000582092 HOXD3P31249 432 aaPredicted RBP7.08□□□□□ -1.28
SS18-220ENST00000582092 HIST1H2BBP33778 126 aa7.08□□□□□ -1.28
SS18-220ENST00000582092 CDX1P47902 265 aaPredicted RBP7.08□□□□□ -1.28
SS18-220ENST00000582092 ZNF138P52744 262 aa7.08□□□□□ -1.28
SS18-220ENST00000582092 SYNJ2BPP57105 145 aa7.08□□□□□ -1.28
SS18-220ENST00000582092 HIST1H2BDP58876 126 aa7.08□□□□□ -1.28
SS18-220ENST00000582092 HIST1H2BCP62807 126 aa7.08□□□□□ -1.28
SS18-220ENST00000582092 RIGQ13278 110 aa7.08□□□□□ -1.28
SS18-220ENST00000582092 HIST2H2BEQ16778 126 aa7.08□□□□□ -1.28
SS18-220ENST00000582092 ACTL10Q5JWF8 245 aa7.08□□□□□ -1.28
SS18-220ENST00000582092 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.08□□□□□ -1.28
SS18-220ENST00000582092 RBPMS2Q6ZRY4 209 aaKnown RBP7.08□□□□□ -1.28
SS18-220ENST00000582092 Q6ZSV7 163 aa7.08□□□□□ -1.28
SS18-220ENST00000582092 REC114Q7Z4M0 266 aa7.08□□□□□ -1.28
SS18-220ENST00000582092 WFDC3Q8IUB2 231 aa7.08□□□□□ -1.28
SS18-220ENST00000582092 RNF152Q8N8N0 203 aa7.08□□□□□ -1.28
SS18-220ENST00000582092 OR1N2Q8NGR9 330 aa7.08□□□□□ -1.28
SS18-220ENST00000582092 HIST1H2BHQ93079 126 aa7.08□□□□□ -1.28
SS18-220ENST00000582092 ZC2HC1AQ96GY0 325 aa7.08□□□□□ -1.28
SS18-220ENST00000582092 LINC00477Q96M19 166 aa7.08□□□□□ -1.28
SS18-220ENST00000582092 PRR25Q96S07 402 aa7.08□□□□□ -1.28
SS18-220ENST00000582092 HIST1H2BNQ99877 126 aa7.08□□□□□ -1.28
SS18-220ENST00000582092 HIST1H2BMQ99879 126 aa7.08□□□□□ -1.28
SS18-220ENST00000582092 ASCL2Q99929 193 aa7.08□□□□□ -1.28
SS18-220ENST00000582092 VGLL1Q99990 258 aa7.08□□□□□ -1.28
SS18-220ENST00000582092 MRPL18Q9H0U6 180 aaKnown RBP7.08□□□□□ -1.28
SS18-220ENST00000582092 SVEP1Q4LDE5 3571 aa7.08□□□□□ -1.28
SS18-220ENST00000582092 C19orf71A6NCJ1 209 aa7.07□□□□□ -1.28
SS18-220ENST00000582092 CA1P00915 261 aaPredicted RBP7.07□□□□□ -1.28
SS18-220ENST00000582092 APCSP02743 223 aa7.07□□□□□ -1.28
SS18-220ENST00000582092 ORM1P02763 201 aa7.07□□□□□ -1.28
SS18-220ENST00000582092 PRB4P10163 310 aaPredicted RBP7.07□□□□□ -1.28
SS18-220ENST00000582092 SNRPD3P62318 126 aaKnown RBP7.07□□□□□ -1.28
SS18-220ENST00000582092 ERCC8Q13216 396 aa7.07□□□□□ -1.28
SS18-220ENST00000582092 Q6AWC8 147 aa7.07□□□□□ -1.28
SS18-220ENST00000582092 ATP5L2Q7Z4Y8 100 aa7.07□□□□□ -1.28
SS18-220ENST00000582092 KLHL30-AS1Q8NEE0 82 aa7.07□□□□□ -1.28
SS18-220ENST00000582092 NUP35Q8NFH5 326 aa7.07□□□□□ -1.28
SS18-220ENST00000582092 C4orf3Q8WVX3 66 aa7.07□□□□□ -1.28
SS18-220ENST00000582092 WFDC12Q8WWY7 111 aa7.07□□□□□ -1.28
SS18-220ENST00000582092 PGLYRP4Q96LB8 373 aa7.07□□□□□ -1.28
SS18-220ENST00000582092 C8orf49Q96NF6 230 aa7.07□□□□□ -1.28
SS18-220ENST00000582092 NEU1Q99519 415 aa7.07□□□□□ -1.28
SS18-220ENST00000582092 C16orf95Q9H693 158 aa7.07□□□□□ -1.28
SS18-220ENST00000582092 C5orf52A6NGY3 159 aa7.06□□□□□ -1.28
SS18-220ENST00000582092 HOXA5P20719 270 aa7.06□□□□□ -1.28
SS18-220ENST00000582092 CBLN1P23435 193 aa7.06□□□□□ -1.28
SS18-220ENST00000582092 CAMPP49913 170 aa7.06□□□□□ -1.28
SS18-220ENST00000582092 OR11H1Q8NG94 326 aa7.06□□□□□ -1.28
SS18-220ENST00000582092 LINC01006Q8NI28 216 aa7.06□□□□□ -1.28
SS18-220ENST00000582092 MYOZ3Q8TDC0 251 aa7.06□□□□□ -1.28
SS18-220ENST00000582092 DYNLRB2Q8TF09 96 aa7.06□□□□□ -1.28
SS18-220ENST00000582092 TPPP3Q9BW30 176 aa7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms