RNA–Protein interactions for RNA: ENST00000567549.2

LINC01238-205, Transcript of long intergenic non-protein coding RNA 1238, humanhuman

BASIC

Gene LINC01238, Length 1,107 nt, Biotype antisense RNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01238-205ENST00000567549 DNAJC4Q9NNZ3 241 aa13.1□□□□□ -0.31
LINC01238-205ENST00000567549 MRPS12O15235 138 aaKnown RBP13.09□□□□□ -0.31
LINC01238-205ENST00000567549 AZU1P20160 251 aa13.09□□□□□ -0.31
LINC01238-205ENST00000567549 TTC32Q5I0X7 151 aa13.09□□□□□ -0.31
LINC01238-205ENST00000567549 ALKAL2Q6UX46 152 aa13.09□□□□□ -0.31
LINC01238-205ENST00000567549 ZNF503Q96F45 646 aa13.09□□□□□ -0.31
LINC01238-205ENST00000567549 ODF3Q96PU9 254 aa13.09□□□□□ -0.31
LINC01238-205ENST00000567549 ATP5SQ99766 215 aa13.09□□□□□ -0.31
LINC01238-205ENST00000567549 WFDC1Q9HC57 220 aa13.09□□□□□ -0.31
LINC01238-205ENST00000567549 NOP10Q9NPE3 64 aaKnown RBP13.09□□□□□ -0.31
LINC01238-205ENST00000567549 UQCC1Q9NVA1 299 aa13.09□□□□□ -0.31
LINC01238-205ENST00000567549 NBDYA0A0U1RRE5 68 aa13.08□□□□□ -0.32
LINC01238-205ENST00000567549 IFNA5P01569 189 aa13.08□□□□□ -0.32
LINC01238-205ENST00000567549 RNASE8Q8TDE3 154 aaKnown RBP13.08□□□□□ -0.32
LINC01238-205ENST00000567549 PLAC8L1A1L4L8 177 aa13.07□□□□□ -0.32
LINC01238-205ENST00000567549 ZNF253O75346 499 aa13.07□□□□□ -0.32
LINC01238-205ENST00000567549 SEC11BP0C7V7 166 aa13.07□□□□□ -0.32
LINC01238-205ENST00000567549 C6orf223Q8N319 242 aa13.07□□□□□ -0.32
LINC01238-205ENST00000567549 SCGB1C1Q8TD33 95 aa13.07□□□□□ -0.32
LINC01238-205ENST00000567549 GNPNAT1Q96EK6 184 aaPredicted RBP13.07□□□□□ -0.32
LINC01238-205ENST00000567549 MGST2Q99735 147 aa13.07□□□□□ -0.32
LINC01238-205ENST00000567549 M6PRP20645 277 aa13.06□□□□□ -0.32
LINC01238-205ENST00000567549 RNF141Q8WVD5 230 aa13.06□□□□□ -0.32
LINC01238-205ENST00000567549 MRPL53Q96EL3 112 aaKnown RBP13.06□□□□□ -0.32
LINC01238-205ENST00000567549 PYGO2Q9BRQ0 406 aa13.06□□□□□ -0.32
LINC01238-205ENST00000567549 PARD6GQ9BYG4 376 aaPredicted RBP13.06□□□□□ -0.32
LINC01238-205ENST00000567549 PRELID1Q9Y255 219 aa13.06□□□□□ -0.32
LINC01238-205ENST00000567549 H3BNG1 76 aa13.05□□□□□ -0.32
LINC01238-205ENST00000567549 MPDU1O75352 247 aa13.05□□□□□ -0.32
LINC01238-205ENST00000567549 IGLC2P0DOY2 106 aa13.05□□□□□ -0.32
LINC01238-205ENST00000567549 RPL29P47914 159 aaKnown RBP13.05□□□□□ -0.32
LINC01238-205ENST00000567549 OR5I1Q13606 314 aa13.05□□□□□ -0.32
LINC01238-205ENST00000567549 ZNRF2Q8NHG8 242 aa13.05□□□□□ -0.32
LINC01238-205ENST00000567549 TMEM37Q8WXS4 190 aa13.05□□□□□ -0.32
LINC01238-205ENST00000567549 KIAA1109Q2LD37 5005 aa13.05□□□□□ -0.32
LINC01238-205ENST00000567549 PRM2P04554 102 aa13.04□□□□□ -0.32
LINC01238-205ENST00000567549 RAB5CP51148 216 aa13.04□□□□□ -0.32
LINC01238-205ENST00000567549 ARL16Q0P5N6 197 aa13.04□□□□□ -0.32
LINC01238-205ENST00000567549 TMED6Q8WW62 240 aa13.04□□□□□ -0.32
LINC01238-205ENST00000567549 WDR83OSQ9Y284 106 aa13.04□□□□□ -0.32
LINC01238-205ENST00000567549 MUC4Q99102 2169 aa13.03□□□□□ -0.32
LINC01238-205ENST00000567549 PCLOQ9Y6V0 5065 aa13.03□□□□□ -0.32
LINC01238-205ENST00000567549 LINC00862A6NCI5 91 aa13.03□□□□□ -0.32
LINC01238-205ENST00000567549 SLC25A5P05141 298 aaKnown RBP13.03□□□□□ -0.32
LINC01238-205ENST00000567549 BTF3P20290 206 aaKnown RBP13.03□□□□□ -0.32
LINC01238-205ENST00000567549 PDE6HQ13956 83 aa13.03□□□□□ -0.32
LINC01238-205ENST00000567549 GFI1BQ5VTD9 330 aa13.03□□□□□ -0.32
LINC01238-205ENST00000567549 SSX7Q7RTT5 188 aa13.03□□□□□ -0.32
LINC01238-205ENST00000567549 RXFP4Q8TDU9 374 aa13.03□□□□□ -0.32
LINC01238-205ENST00000567549 SAT2Q96F10 170 aaPredicted RBP13.03□□□□□ -0.32
LINC01238-205ENST00000567549 AAMDCQ9H7C9 122 aa13.03□□□□□ -0.32
LINC01238-205ENST00000567549 NPIPB6E9PJ23 425 aa13.02□□□□□ -0.33
LINC01238-205ENST00000567549 SULT1A2P50226 295 aa13.02□□□□□ -0.33
LINC01238-205ENST00000567549 VWC2Q2TAL6 325 aa13.02□□□□□ -0.33
LINC01238-205ENST00000567549 KCNIP2Q9NS61 270 aa13.02□□□□□ -0.33
LINC01238-205ENST00000567549 SLC39A9Q9NUM3 307 aa13.02□□□□□ -0.33
LINC01238-205ENST00000567549 TIMM9Q9Y5J7 89 aa13.02□□□□□ -0.33
LINC01238-205ENST00000567549 UBE2L5PA0A1B0GUS4 154 aa13.01□□□□□ -0.33
LINC01238-205ENST00000567549 UMAD1C9J7I0 102 aa13.01□□□□□ -0.33
LINC01238-205ENST00000567549 SLC17A3O00476 420 aa13.01□□□□□ -0.33
LINC01238-205ENST00000567549 NMBP08949 121 aa13.01□□□□□ -0.33
LINC01238-205ENST00000567549 BLOC1S1P78537 153 aa13.01□□□□□ -0.33
LINC01238-205ENST00000567549 DAZ2Q13117 558 aaKnown RBP13.01□□□□□ -0.33
LINC01238-205ENST00000567549 MIC13Q5XKP0 118 aa13.01□□□□□ -0.33
LINC01238-205ENST00000567549 LINC00612Q8N6U2 182 aa13.01□□□□□ -0.33
LINC01238-205ENST00000567549 HSD17B11Q8NBQ5 300 aa13.01□□□□□ -0.33
LINC01238-205ENST00000567549 LINC00477Q96M19 166 aa13.01□□□□□ -0.33
LINC01238-205ENST00000567549 MED9Q9NWA0 146 aa13.01□□□□□ -0.33
LINC01238-205ENST00000567549 TMEM14CQ9P0S9 112 aa13.01□□□□□ -0.33
LINC01238-205ENST00000567549 LINC00588Q9Y4M8 146 aa13.01□□□□□ -0.33
LINC01238-205ENST00000567549 TRAV26-1A0A087WT03 109 aa13□□□□□ -0.33
LINC01238-205ENST00000567549 TRAV12-3A0A0B4J271 114 aa13□□□□□ -0.33
LINC01238-205ENST00000567549 A0A1W2PPQ1 181 aa13□□□□□ -0.33
LINC01238-205ENST00000567549 GAGE12BA1L429 117 aa13□□□□□ -0.33
LINC01238-205ENST00000567549 C16orf90A8MZG2 172 aa13□□□□□ -0.33
LINC01238-205ENST00000567549 H3BQ15 152 aa13□□□□□ -0.33
LINC01238-205ENST00000567549 GAGE7O76087 117 aa13□□□□□ -0.33
LINC01238-205ENST00000567549 SNRPCP09234 159 aaKnown RBP13□□□□□ -0.33
LINC01238-205ENST00000567549 GAGE12FP0CL80 117 aa13□□□□□ -0.33
LINC01238-205ENST00000567549 GAGE12GP0CL81 117 aa13□□□□□ -0.33
LINC01238-205ENST00000567549 GAGE12IP0CL82 117 aa13□□□□□ -0.33
LINC01238-205ENST00000567549 HIST1H1EP10412 219 aaKnown RBP13□□□□□ -0.33
LINC01238-205ENST00000567549 ATP6V0CP27449 155 aa13□□□□□ -0.33
LINC01238-205ENST00000567549 PSMG3Q9BT73 122 aaPredicted RBP13□□□□□ -0.33
LINC01238-205ENST00000567549 WDR61Q9GZS3 305 aaKnown RBP13□□□□□ -0.33
LINC01238-205ENST00000567549 Q9H8V8 135 aa13□□□□□ -0.33
LINC01238-205ENST00000567549 PKHD1P08F94 4074 aa13□□□□□ -0.33
LINC01238-205ENST00000567549 TRGV2A0A075B6R0 118 aa12.99□□□□□ -0.33
LINC01238-205ENST00000567549 H3BTX0 84 aa12.99□□□□□ -0.33
LINC01238-205ENST00000567549 SERF2P84101 59 aa12.99□□□□□ -0.33
LINC01238-205ENST00000567549 FAM74A1Q5RGS3 127 aa12.99□□□□□ -0.33
LINC01238-205ENST00000567549 SLC7A5P1Q8MH63 180 aa12.99□□□□□ -0.33
LINC01238-205ENST00000567549 OR2G3Q8NGZ4 309 aa12.99□□□□□ -0.33
LINC01238-205ENST00000567549 TRBV19A0A075B6N1 114 aa12.98□□□□□ -0.33
LINC01238-205ENST00000567549 C7orf71A4D174 169 aa12.98□□□□□ -0.33
LINC01238-205ENST00000567549 J3KRW8 73 aa12.98□□□□□ -0.33
LINC01238-205ENST00000567549 FGF7P21781 194 aa12.98□□□□□ -0.33
LINC01238-205ENST00000567549 MORN5Q5VZ52 161 aa12.98□□□□□ -0.33
LINC01238-205ENST00000567549 LINC00467Q9BRT7 94 aa12.98□□□□□ -0.33
LINC01238-205ENST00000567549 UPK3BQ9BT76 320 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms