RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 GAGE12BA1L429 117 aa7.55□□□□□ -1.2
VPS39-208ENST00000564994 C7orf71A4D174 169 aa7.55□□□□□ -1.2
VPS39-208ENST00000564994 KLLNB2CW77 178 aa7.55□□□□□ -1.2
VPS39-208ENST00000564994 ZNF324O75467 553 aaPredicted RBP7.55□□□□□ -1.2
VPS39-208ENST00000564994 GAGE7O76087 117 aa7.55□□□□□ -1.2
VPS39-208ENST00000564994 IGKV2D-40P01614 121 aaPredicted RBP7.55□□□□□ -1.2
VPS39-208ENST00000564994 SLC25A5P05141 298 aaKnown RBP7.55□□□□□ -1.2
VPS39-208ENST00000564994 NBEAP1P0C6P0 100 aa7.55□□□□□ -1.2
VPS39-208ENST00000564994 GAGE12FP0CL80 117 aa7.55□□□□□ -1.2
VPS39-208ENST00000564994 GAGE12GP0CL81 117 aa7.55□□□□□ -1.2
VPS39-208ENST00000564994 GAGE12IP0CL82 117 aa7.55□□□□□ -1.2
VPS39-208ENST00000564994 FAM3BP58499 235 aaPredicted RBP7.55□□□□□ -1.2
VPS39-208ENST00000564994 CYCSP99999 105 aaKnown RBP7.55□□□□□ -1.2
VPS39-208ENST00000564994 CD300CQ08708 224 aa7.55□□□□□ -1.2
VPS39-208ENST00000564994 BTN1A1Q13410 526 aa7.55□□□□□ -1.2
VPS39-208ENST00000564994 ICAM4Q14773 271 aa7.55□□□□□ -1.2
VPS39-208ENST00000564994 FAM122CQ6P4D5 195 aa7.55□□□□□ -1.2
VPS39-208ENST00000564994 FXYD5Q96DB9 178 aa7.55□□□□□ -1.2
VPS39-208ENST00000564994 LINC00477Q96M19 166 aa7.55□□□□□ -1.2
VPS39-208ENST00000564994 PYGO2Q9BRQ0 406 aa7.55□□□□□ -1.2
VPS39-208ENST00000564994 ATG101Q9BSB4 218 aa7.55□□□□□ -1.2
VPS39-208ENST00000564994 OR51M1Q9H341 326 aa7.55□□□□□ -1.2
VPS39-208ENST00000564994 LINC00588Q9Y4M8 146 aa7.55□□□□□ -1.2
VPS39-208ENST00000564994 SNURFLB1AK76 121 aa7.54□□□□□ -1.2
VPS39-208ENST00000564994 MPC2O95563 127 aa7.54□□□□□ -1.2
VPS39-208ENST00000564994 OR10J4P0C629 311 aa7.54□□□□□ -1.2
VPS39-208ENST00000564994 CRISP2P16562 243 aa7.54□□□□□ -1.2
VPS39-208ENST00000564994 DAZ2Q13117 558 aaKnown RBP7.54□□□□□ -1.2
VPS39-208ENST00000564994 OR5I1Q13606 314 aa7.54□□□□□ -1.2
VPS39-208ENST00000564994 PRR9Q5T870 116 aa7.54□□□□□ -1.2
VPS39-208ENST00000564994 Q6ZQT7 251 aa7.54□□□□□ -1.2
VPS39-208ENST00000564994 C9orf47Q6ZRZ4 202 aa7.54□□□□□ -1.2
VPS39-208ENST00000564994 Q6ZTI0 123 aa7.54□□□□□ -1.2
VPS39-208ENST00000564994 C11orf72Q8NBR9 251 aa7.54□□□□□ -1.2
VPS39-208ENST00000564994 ZNF503Q96F45 646 aa7.54□□□□□ -1.2
VPS39-208ENST00000564994 PHYHIPLQ96FC7 376 aa7.54□□□□□ -1.2
VPS39-208ENST00000564994 VGLL1Q99990 258 aa7.54□□□□□ -1.2
VPS39-208ENST00000564994 AAMDCQ9H7C9 122 aa7.54□□□□□ -1.2
VPS39-208ENST00000564994 FUT9Q9Y231 359 aa7.54□□□□□ -1.2
VPS39-208ENST00000564994 DNAH5Q8TE73 4624 aa7.54□□□□□ -1.2
VPS39-208ENST00000564994 TRAV26-1A0A087WT03 109 aa7.53□□□□□ -1.2
VPS39-208ENST00000564994 A0A0J9YY99 117 aa7.53□□□□□ -1.2
VPS39-208ENST00000564994 SSNA1O43805 119 aa7.53□□□□□ -1.2
VPS39-208ENST00000564994 RNASE4P34096 147 aaKnown RBP7.53□□□□□ -1.2
VPS39-208ENST00000564994 C1orf134Q5TEV5 83 aa7.53□□□□□ -1.2
VPS39-208ENST00000564994 ZFAND2AQ8N6M9 145 aa7.53□□□□□ -1.2
VPS39-208ENST00000564994 ATP5SQ99766 215 aa7.53□□□□□ -1.2
VPS39-208ENST00000564994 PAXXQ9BUH6 204 aa7.53□□□□□ -1.2
VPS39-208ENST00000564994 MRPL32Q9BYC8 188 aaKnown RBP7.53□□□□□ -1.2
VPS39-208ENST00000564994 TMPRSS5Q9H3S3 457 aa7.53□□□□□ -1.2
VPS39-208ENST00000564994 GSN-AS1Q9NRJ2 163 aa7.53□□□□□ -1.2
VPS39-208ENST00000564994 KCNIP2Q9NS61 270 aa7.53□□□□□ -1.2
VPS39-208ENST00000564994 HSPB11Q9Y547 144 aa7.53□□□□□ -1.2
VPS39-208ENST00000564994 NBDYA0A0U1RRE5 68 aa7.52□□□□□ -1.21
VPS39-208ENST00000564994 C17orf112F2Z3M2 114 aa7.52□□□□□ -1.21
VPS39-208ENST00000564994 EIF3GO75821 320 aaKnown RBP eCLIP7.52□□□□□ -1.21
VPS39-208ENST00000564994 M6PRP20645 277 aa7.52□□□□□ -1.21
VPS39-208ENST00000564994 CCL18P55774 89 aa7.52□□□□□ -1.21
VPS39-208ENST00000564994 ANXA2RQ3ZCQ2 193 aa7.52□□□□□ -1.21
VPS39-208ENST00000564994 SSX7Q7RTT5 188 aa7.52□□□□□ -1.21
VPS39-208ENST00000564994 EIF4E3Q8N5X7 224 aaKnown RBP7.52□□□□□ -1.21
VPS39-208ENST00000564994 RXFP4Q8TDU9 374 aa7.52□□□□□ -1.21
VPS39-208ENST00000564994 GNPNAT1Q96EK6 184 aaPredicted RBP7.52□□□□□ -1.21
VPS39-208ENST00000564994 LINC00467Q9BRT7 94 aa7.52□□□□□ -1.21
VPS39-208ENST00000564994 SMIM3Q9BZL3 60 aa7.52□□□□□ -1.21
VPS39-208ENST00000564994 ZNF492Q9P255 531 aa7.52□□□□□ -1.21
VPS39-208ENST00000564994 TP53TG3Q9ULZ0 132 aa7.52□□□□□ -1.21
VPS39-208ENST00000564994 KLF12Q9Y4X4 402 aa7.52□□□□□ -1.21
VPS39-208ENST00000564994 ABCA13Q86UQ4 5058 aa7.51□□□□□ -1.21
VPS39-208ENST00000564994 HSPG2P98160 4391 aa7.51□□□□□ -1.21
VPS39-208ENST00000564994 APOBP04114 4563 aaKnown RBP7.51□□□□□ -1.21
VPS39-208ENST00000564994 OR7C2O60412 319 aa7.51□□□□□ -1.21
VPS39-208ENST00000564994 GPX1P07203 203 aa7.51□□□□□ -1.21
VPS39-208ENST00000564994 NMBP08949 121 aa7.51□□□□□ -1.21
VPS39-208ENST00000564994 RPL12P30050 165 aaKnown RBP7.51□□□□□ -1.21
VPS39-208ENST00000564994 DEFA1P59665 94 aa7.51□□□□□ -1.21
VPS39-208ENST00000564994 DEFA3P59666 94 aa7.51□□□□□ -1.21
VPS39-208ENST00000564994 SOHLH1Q5JUK2 328 aa7.51□□□□□ -1.21
VPS39-208ENST00000564994 FFAR4Q5NUL3 377 aa7.51□□□□□ -1.21
VPS39-208ENST00000564994 TMEM78Q5T7P6 136 aa7.51□□□□□ -1.21
VPS39-208ENST00000564994 ZNF680Q8NEM1 530 aa7.51□□□□□ -1.21
VPS39-208ENST00000564994 Q8TAT8 98 aa7.51□□□□□ -1.21
VPS39-208ENST00000564994 WFDC1Q9HC57 220 aa7.51□□□□□ -1.21
VPS39-208ENST00000564994 MBD2Q9UBB5 411 aa7.51□□□□□ -1.21
VPS39-208ENST00000564994 TRGV1A0A0A0MS02 117 aa7.5□□□□□ -1.21
VPS39-208ENST00000564994 SPINK4O60575 86 aa7.5□□□□□ -1.21
VPS39-208ENST00000564994 PET100P0DJ07 73 aa7.5□□□□□ -1.21
VPS39-208ENST00000564994 ZNF138P52744 262 aa7.5□□□□□ -1.21
VPS39-208ENST00000564994 TCL1AP56279 114 aa7.5□□□□□ -1.21
VPS39-208ENST00000564994 RANP62826 216 aaKnown RBP7.5□□□□□ -1.21
VPS39-208ENST00000564994 UBE2L3P68036 154 aaKnown RBP7.5□□□□□ -1.21
VPS39-208ENST00000564994 TNP2Q05952 138 aa7.5□□□□□ -1.21
VPS39-208ENST00000564994 ESRGQ1W209 222 aa7.5□□□□□ -1.21
VPS39-208ENST00000564994 ZNF575Q86XF7 245 aa7.5□□□□□ -1.21
VPS39-208ENST00000564994 VSIG2Q96IQ7 327 aa7.5□□□□□ -1.21
VPS39-208ENST00000564994 C18orf15Q96N68 181 aa7.5□□□□□ -1.21
VPS39-208ENST00000564994 Q9H3A6 140 aa7.5□□□□□ -1.21
VPS39-208ENST00000564994 IGHV1OR15-1A0A075B7D0 117 aa7.49□□□□□ -1.21
VPS39-208ENST00000564994 H3BNG1 76 aa7.49□□□□□ -1.21
VPS39-208ENST00000564994 IFNA5P01569 189 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms