RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 IGLV2-11P01706 119 aa6.79□□□□□ -1.32
VPS39-207ENST00000563692 P01737 135 aa6.79□□□□□ -1.32
VPS39-207ENST00000563692 S100A6P06703 90 aa6.79□□□□□ -1.32
VPS39-207ENST00000563692 CT45A10P0DMU9 189 aa6.79□□□□□ -1.32
VPS39-207ENST00000563692 ID1P41134 155 aa6.79□□□□□ -1.32
VPS39-207ENST00000563692 COX19Q49B96 90 aa6.79□□□□□ -1.32
VPS39-207ENST00000563692 PRR27Q6MZM9 219 aa6.79□□□□□ -1.32
VPS39-207ENST00000563692 C8orf86Q6ZUL3 223 aa6.79□□□□□ -1.32
VPS39-207ENST00000563692 Q86TA4 180 aa6.79□□□□□ -1.32
VPS39-207ENST00000563692 OR1N2Q8NGR9 330 aa6.79□□□□□ -1.32
VPS39-207ENST00000563692 C4orf3Q8WVX3 66 aa6.79□□□□□ -1.32
VPS39-207ENST00000563692 PEMTQ9UBM1 199 aa6.79□□□□□ -1.32
VPS39-207ENST00000563692 IGHV4OR15-8A0A075B7B6 117 aa6.78□□□□□ -1.32
VPS39-207ENST00000563692 A0A087WW49 117 aa6.78□□□□□ -1.32
VPS39-207ENST00000563692 TRAV8-1A0A0A6YYK1 113 aa6.78□□□□□ -1.32
VPS39-207ENST00000563692 A0A1W2PRX2 142 aa6.78□□□□□ -1.32
VPS39-207ENST00000563692 A8MWL6 223 aa6.78□□□□□ -1.32
VPS39-207ENST00000563692 OVOL1O14753 267 aa6.78□□□□□ -1.32
VPS39-207ENST00000563692 PF4P02776 101 aa6.78□□□□□ -1.32
VPS39-207ENST00000563692 TYMSP04818 313 aa6.78□□□□□ -1.32
VPS39-207ENST00000563692 HIST2H2BDQ6DRA6 164 aa6.78□□□□□ -1.32
VPS39-207ENST00000563692 GBGT1Q8N5D6 347 aa6.78□□□□□ -1.32
VPS39-207ENST00000563692 OR4B1Q8NGF8 309 aa6.78□□□□□ -1.32
VPS39-207ENST00000563692 NRN1Q9NPD7 142 aa6.78□□□□□ -1.32
VPS39-207ENST00000563692 TSSC4Q9Y5U2 329 aaPredicted RBP6.78□□□□□ -1.32
VPS39-207ENST00000563692 PKD1L1Q8TDX9 2849 aa6.78□□□□□ -1.32
VPS39-207ENST00000563692 TRAV8-2A0A0B4J237 113 aa6.77□□□□□ -1.33
VPS39-207ENST00000563692 SMIM27A0A1W2PRY6 76 aa6.77□□□□□ -1.33
VPS39-207ENST00000563692 ZNF705FA8MVS1 300 aaPredicted RBP6.77□□□□□ -1.33
VPS39-207ENST00000563692 A8MWP6 167 aa6.77□□□□□ -1.33
VPS39-207ENST00000563692 CD33P20138 364 aa6.77□□□□□ -1.33
VPS39-207ENST00000563692 HOXD3P31249 432 aaPredicted RBP6.77□□□□□ -1.33
VPS39-207ENST00000563692 SYNJ2BPP57105 145 aa6.77□□□□□ -1.33
VPS39-207ENST00000563692 PAFAH1B2P68402 229 aa6.77□□□□□ -1.33
VPS39-207ENST00000563692 KLF5Q13887 457 aaPredicted RBP6.77□□□□□ -1.33
VPS39-207ENST00000563692 CT83Q5H943 113 aa6.77□□□□□ -1.33
VPS39-207ENST00000563692 TMEM78Q5T7P6 136 aa6.77□□□□□ -1.33
VPS39-207ENST00000563692 IGFL4Q6B9Z1 124 aa6.77□□□□□ -1.33
VPS39-207ENST00000563692 TCF24Q7RTU0 167 aa6.77□□□□□ -1.33
VPS39-207ENST00000563692 OR11H1Q8NG94 326 aa6.77□□□□□ -1.33
VPS39-207ENST00000563692 OR10J6PQ8NGY7 276 aa6.77□□□□□ -1.33
VPS39-207ENST00000563692 TSKUQ8WUA8 353 aa6.77□□□□□ -1.33
VPS39-207ENST00000563692 LINC00477Q96M19 166 aa6.77□□□□□ -1.33
VPS39-207ENST00000563692 PRR25Q96S07 402 aa6.77□□□□□ -1.33
VPS39-207ENST00000563692 RPP21Q9H633 154 aaKnown RBP6.77□□□□□ -1.33
VPS39-207ENST00000563692 NAT8BQ9UHF3 227 aa6.77□□□□□ -1.33
VPS39-207ENST00000563692 NOTCH1P46531 2555 aa6.77□□□□□ -1.33
VPS39-207ENST00000563692 NOTCH3Q9UM47 2321 aa6.77□□□□□ -1.33
VPS39-207ENST00000563692 IGKV2-40A0A087WW87 121 aaPredicted RBP6.76□□□□□ -1.33
VPS39-207ENST00000563692 XKRY2A2RUG3 117 aa6.76□□□□□ -1.33
VPS39-207ENST00000563692 C19orf71A6NCJ1 209 aa6.76□□□□□ -1.33
VPS39-207ENST00000563692 FAM231BA6NCW3 169 aa6.76□□□□□ -1.33
VPS39-207ENST00000563692 IZUMO1RA6ND01 250 aa6.76□□□□□ -1.33
VPS39-207ENST00000563692 G3V4G9 280 aa6.76□□□□□ -1.33
VPS39-207ENST00000563692 IGKV2D-40P01614 121 aaPredicted RBP6.76□□□□□ -1.33
VPS39-207ENST00000563692 TRGC2P03986 189 aa6.76□□□□□ -1.33
VPS39-207ENST00000563692 CBLN1P23435 193 aa6.76□□□□□ -1.33
VPS39-207ENST00000563692 HLA-DMBP28068 263 aa6.76□□□□□ -1.33
VPS39-207ENST00000563692 SMUG1Q53HV7 270 aa6.76□□□□□ -1.33
VPS39-207ENST00000563692 WDR73Q6P4I2 378 aa6.76□□□□□ -1.33
VPS39-207ENST00000563692 COX8CQ7Z4L0 72 aa6.76□□□□□ -1.33
VPS39-207ENST00000563692 ZFP82Q8N141 532 aa6.76□□□□□ -1.33
VPS39-207ENST00000563692 RNF182Q8N6D2 247 aa6.76□□□□□ -1.33
VPS39-207ENST00000563692 ZNF738Q8NE65 137 aa6.76□□□□□ -1.33
VPS39-207ENST00000563692 KLHL30-AS1Q8NEE0 82 aa6.76□□□□□ -1.33
VPS39-207ENST00000563692 WIPF2Q8TF74 440 aaPredicted RBP6.76□□□□□ -1.33
VPS39-207ENST00000563692 VGLL1Q99990 258 aa6.76□□□□□ -1.33
VPS39-207ENST00000563692 GFRA4Q9GZZ7 299 aa6.76□□□□□ -1.33
VPS39-207ENST00000563692 TRAPPC1Q9Y5R8 145 aa6.76□□□□□ -1.33
VPS39-207ENST00000563692 MEGF8Q7Z7M0 2845 aa6.76□□□□□ -1.33
VPS39-207ENST00000563692 TMEM213A2RRL7 107 aa6.75□□□□□ -1.33
VPS39-207ENST00000563692 C2orf70A6NJV1 201 aa6.75□□□□□ -1.33
VPS39-207ENST00000563692 FABP5P3A8MUU1 101 aa6.75□□□□□ -1.33
VPS39-207ENST00000563692 ZNF138P52744 262 aa6.75□□□□□ -1.33
VPS39-207ENST00000563692 RPS20P60866 119 aaKnown RBP6.75□□□□□ -1.33
VPS39-207ENST00000563692 TCTEX1D4Q5JR98 221 aa6.75□□□□□ -1.33
VPS39-207ENST00000563692 FAM162BQ5T6X4 162 aa6.75□□□□□ -1.33
VPS39-207ENST00000563692 SAMD5Q5TGI4 173 aa6.75□□□□□ -1.33
VPS39-207ENST00000563692 RASL11AQ6T310 242 aa6.75□□□□□ -1.33
VPS39-207ENST00000563692 C9orf47Q6ZRZ4 202 aa6.75□□□□□ -1.33
VPS39-207ENST00000563692 ZC2HC1AQ96GY0 325 aa6.75□□□□□ -1.33
VPS39-207ENST00000563692 ASCL2Q99929 193 aa6.75□□□□□ -1.33
VPS39-207ENST00000563692 SAV1Q9H4B6 383 aaPredicted RBP6.75□□□□□ -1.33
VPS39-207ENST00000563692 PPP1R14DQ9NXH3 145 aa6.75□□□□□ -1.33
VPS39-207ENST00000563692 LENEPQ9Y5L5 61 aa6.75□□□□□ -1.33
VPS39-207ENST00000563692 IGKV3-7A0A075B6H7 116 aa6.74□□□□□ -1.33
VPS39-207ENST00000563692 LOC105371267A0A1B0GV96 52 aa6.74□□□□□ -1.33
VPS39-207ENST00000563692 ADARB2-AS1A8MUL3 147 aa6.74□□□□□ -1.33
VPS39-207ENST00000563692 PRAC2D3DTV9 90 aa6.74□□□□□ -1.33
VPS39-207ENST00000563692 NPIPB6E9PJ23 425 aa6.74□□□□□ -1.33
VPS39-207ENST00000563692 SOCS3O14543 225 aa6.74□□□□□ -1.33
VPS39-207ENST00000563692 TCL1AP56279 114 aa6.74□□□□□ -1.33
VPS39-207ENST00000563692 SNRPD3P62318 126 aaKnown RBP6.74□□□□□ -1.33
VPS39-207ENST00000563692 ERCC8Q13216 396 aa6.74□□□□□ -1.33
VPS39-207ENST00000563692 BEAN1Q3B7T3 259 aa6.74□□□□□ -1.33
VPS39-207ENST00000563692 OXLD1Q5BKU9 147 aa6.74□□□□□ -1.33
VPS39-207ENST00000563692 LINC00322Q6ZN03 302 aaPredicted RBP6.74□□□□□ -1.33
VPS39-207ENST00000563692 OR2D3Q8NGH3 330 aa6.74□□□□□ -1.33
VPS39-207ENST00000563692 OR9G4Q8NGQ1 327 aa6.74□□□□□ -1.33
VPS39-207ENST00000563692 GNB1LQ9BYB4 327 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 79.2 ms