RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 CST9LP1Q5W188 147 aa7.38□□□□□ -1.23
USP3-216ENST00000559873 AMTNQ6UX39 209 aa7.38□□□□□ -1.23
USP3-216ENST00000559873 C9orf47Q6ZRZ4 202 aa7.38□□□□□ -1.23
USP3-216ENST00000559873 GOLT1AQ6ZVE7 132 aa7.38□□□□□ -1.23
USP3-216ENST00000559873 CYB561D1Q8N8Q1 229 aa7.38□□□□□ -1.23
USP3-216ENST00000559873 HIST1H2BAQ96A08 127 aa7.38□□□□□ -1.23
USP3-216ENST00000559873 TXNDC17Q9BRA2 123 aa7.38□□□□□ -1.23
USP3-216ENST00000559873 ATG101Q9BSB4 218 aa7.38□□□□□ -1.23
USP3-216ENST00000559873 NDFIP1Q9BT67 221 aa7.38□□□□□ -1.23
USP3-216ENST00000559873 TMEM208Q9BTX3 173 aa7.38□□□□□ -1.23
USP3-216ENST00000559873 XCL2Q9UBD3 114 aa7.38□□□□□ -1.23
USP3-216ENST00000559873 AGRNO00468 2067 aa7.37□□□□□ -1.23
USP3-216ENST00000559873 TCRAP04437 139 aa7.37□□□□□ -1.23
USP3-216ENST00000559873 ZNF138P52744 262 aa7.37□□□□□ -1.23
USP3-216ENST00000559873 FXYD7P58549 80 aa7.37□□□□□ -1.23
USP3-216ENST00000559873 IGF2BP2-AS1Q96M15 143 aa7.37□□□□□ -1.23
USP3-216ENST00000559873 C20orf144Q9BQM9 153 aa7.37□□□□□ -1.23
USP3-216ENST00000559873 SLC35B3Q9H1N7 401 aa7.37□□□□□ -1.23
USP3-216ENST00000559873 EPDR1Q9UM22 224 aa7.37□□□□□ -1.23
USP3-216ENST00000559873 YTHDF2Q9Y5A9 579 aaKnown RBP7.37□□□□□ -1.23
USP3-216ENST00000559873 U3KQK5 164 aa7.37□□□□□ -1.23
USP3-216ENST00000559873 STAB2Q8WWQ8 2551 aa7.37□□□□□ -1.23
USP3-216ENST00000559873 DNAH9Q9NYC9 4486 aa7.37□□□□□ -1.23
USP3-216ENST00000559873 C11orf94C9JXX5 98 aa7.36□□□□□ -1.23
USP3-216ENST00000559873 M0R2Z0 102 aa7.36□□□□□ -1.23
USP3-216ENST00000559873 PAGE4O60829 102 aa7.36□□□□□ -1.23
USP3-216ENST00000559873 NMBP08949 121 aa7.36□□□□□ -1.23
USP3-216ENST00000559873 UBE2G1P62253 170 aa7.36□□□□□ -1.23
USP3-216ENST00000559873 GNG5P63218 68 aa7.36□□□□□ -1.23
USP3-216ENST00000559873 TEX261Q6UWH6 196 aa7.36□□□□□ -1.23
USP3-216ENST00000559873 TMEM256Q8N2U0 113 aa7.36□□□□□ -1.23
USP3-216ENST00000559873 TMEM75Q8N9X5 138 aa7.36□□□□□ -1.23
USP3-216ENST00000559873 OR11H2Q8NH07 326 aa7.36□□□□□ -1.23
USP3-216ENST00000559873 RARRES2Q99969 163 aa7.36□□□□□ -1.23
USP3-216ENST00000559873 OVOL2Q9BRP0 275 aa7.36□□□□□ -1.23
USP3-216ENST00000559873 AGPAT4-IT1Q9H0P7 198 aa7.36□□□□□ -1.23
USP3-216ENST00000559873 RETNQ9HD89 108 aa7.36□□□□□ -1.23
USP3-216ENST00000559873 ZNF492Q9P255 531 aa7.36□□□□□ -1.23
USP3-216ENST00000559873 GNG13Q9P2W3 67 aa7.36□□□□□ -1.23
USP3-216ENST00000559873 LENEPQ9Y5L5 61 aa7.36□□□□□ -1.23
USP3-216ENST00000559873 PEX7O00628 323 aa7.35□□□□□ -1.23
USP3-216ENST00000559873 GPX1P07203 203 aa7.35□□□□□ -1.23
USP3-216ENST00000559873 GIG44P09565 113 aaPredicted RBP7.35□□□□□ -1.23
USP3-216ENST00000559873 CT45A10P0DMU9 189 aa7.35□□□□□ -1.23
USP3-216ENST00000559873 PRB4P10163 310 aaPredicted RBP7.35□□□□□ -1.23
USP3-216ENST00000559873 MIFP14174 115 aa7.35□□□□□ -1.23
USP3-216ENST00000559873 CRISP2P16562 243 aa7.35□□□□□ -1.23
USP3-216ENST00000559873 AKR1C3P42330 323 aa7.35□□□□□ -1.23
USP3-216ENST00000559873 ERCC8Q13216 396 aa7.35□□□□□ -1.23
USP3-216ENST00000559873 PMS2P11Q13670 270 aa7.35□□□□□ -1.23
USP3-216ENST00000559873 VGLL1Q99990 258 aa7.35□□□□□ -1.23
USP3-216ENST00000559873 NIPSNAP3BQ9BS92 247 aa7.35□□□□□ -1.23
USP3-216ENST00000559873 TRAV12-2A0A075B6T6 113 aa7.34□□□□□ -1.23
USP3-216ENST00000559873 C7orf71A4D174 169 aa7.34□□□□□ -1.23
USP3-216ENST00000559873 SMIM9A6NGZ8 99 aa7.34□□□□□ -1.23
USP3-216ENST00000559873 H7BYZ3 331 aa7.34□□□□□ -1.23
USP3-216ENST00000559873 BCL2P10415 239 aa7.34□□□□□ -1.23
USP3-216ENST00000559873 ATP5G3P48201 142 aa7.34□□□□□ -1.23
USP3-216ENST00000559873 FLI1Q01543 452 aaPredicted RBP7.34□□□□□ -1.23
USP3-216ENST00000559873 MEF2BQ02080 365 aaPredicted RBP7.34□□□□□ -1.23
USP3-216ENST00000559873 SAPCD1Q5SSQ6 148 aa7.34□□□□□ -1.23
USP3-216ENST00000559873 ZNF705AQ6ZN79 300 aaPredicted RBP7.34□□□□□ -1.23
USP3-216ENST00000559873 CSNK1G2-AS1Q8NCQ2 148 aa7.34□□□□□ -1.23
USP3-216ENST00000559873 ZNF680Q8NEM1 530 aa7.34□□□□□ -1.23
USP3-216ENST00000559873 Q8TAT8 98 aa7.34□□□□□ -1.23
USP3-216ENST00000559873 FMC1Q96HJ9 113 aa7.34□□□□□ -1.23
USP3-216ENST00000559873 FAM19A4Q96LR4 140 aa7.34□□□□□ -1.23
USP3-216ENST00000559873 IGHV3OR16-12A0A075B7B8 117 aa7.33□□□□□ -1.24
USP3-216ENST00000559873 TMEM189A5PLL7 270 aa7.33□□□□□ -1.24
USP3-216ENST00000559873 KLLNB2CW77 178 aa7.33□□□□□ -1.24
USP3-216ENST00000559873 J3KRW8 73 aa7.33□□□□□ -1.24
USP3-216ENST00000559873 CRXO43186 299 aaPredicted RBP7.33□□□□□ -1.24
USP3-216ENST00000559873 PDE6DO43924 150 aa7.33□□□□□ -1.24
USP3-216ENST00000559873 S100A9P06702 114 aaKnown RBP7.33□□□□□ -1.24
USP3-216ENST00000559873 RAB14P61106 215 aa7.33□□□□□ -1.24
USP3-216ENST00000559873 RRN3P1Q2M238 152 aa7.33□□□□□ -1.24
USP3-216ENST00000559873 GFI1BQ5VTD9 330 aa7.33□□□□□ -1.24
USP3-216ENST00000559873 CCDC28AQ8IWP9 274 aa7.33□□□□□ -1.24
USP3-216ENST00000559873 LINC01587Q99440 93 aa7.33□□□□□ -1.24
USP3-216ENST00000559873 NEU1Q99519 415 aa7.33□□□□□ -1.24
USP3-216ENST00000559873 C11orf68Q9H3H3 251 aaKnown RBP7.33□□□□□ -1.24
USP3-216ENST00000559873 TREM1Q9NP99 234 aa7.33□□□□□ -1.24
USP3-216ENST00000559873 PSG8Q9UQ74 426 aa7.33□□□□□ -1.24
USP3-216ENST00000559873 HUWE1Q7Z6Z7 4374 aaKnown RBP7.33□□□□□ -1.24
USP3-216ENST00000559873 TRAV8-1A0A0A6YYK1 113 aa7.32□□□□□ -1.24
USP3-216ENST00000559873 TAS2R60P59551 318 aa7.32□□□□□ -1.24
USP3-216ENST00000559873 CCL20P78556 96 aa7.32□□□□□ -1.24
USP3-216ENST00000559873 ZNF767PQ75MW2 155 aa7.32□□□□□ -1.24
USP3-216ENST00000559873 PRNTQ86SH4 94 aa7.32□□□□□ -1.24
USP3-216ENST00000559873 Q86TA4 180 aa7.32□□□□□ -1.24
USP3-216ENST00000559873 LYPD6BQ8NI32 183 aa7.32□□□□□ -1.24
USP3-216ENST00000559873 PYGO2Q9BRQ0 406 aa7.32□□□□□ -1.24
USP3-216ENST00000559873 VAX2Q9UIW0 290 aa7.32□□□□□ -1.24
USP3-216ENST00000559873 TRAV12-3A0A0B4J271 114 aa7.31□□□□□ -1.24
USP3-216ENST00000559873 TRBV6-1A0A0K0K1D8 114 aa7.31□□□□□ -1.24
USP3-216ENST00000559873 TEX48A0A1B0GUV7 120 aa7.31□□□□□ -1.24
USP3-216ENST00000559873 LOC102723971A0A1B0GUV8 181 aa7.31□□□□□ -1.24
USP3-216ENST00000559873 RNASE4P34096 147 aaKnown RBP7.31□□□□□ -1.24
USP3-216ENST00000559873 BTN1A1Q13410 526 aa7.31□□□□□ -1.24
USP3-216ENST00000559873 SMUG1Q53HV7 270 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms