RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 PRELID3AQ96N28 172 aa5.83□□□□□ -1.48
LIMA1-213ENST00000552720 IGHV7-81A0A0B4J1V7 117 aa5.82□□□□□ -1.48
LIMA1-213ENST00000552720 PPIFP30405 207 aaKnown RBP5.82□□□□□ -1.48
LIMA1-213ENST00000552720 GPR183P32249 361 aa5.82□□□□□ -1.48
LIMA1-213ENST00000552720 RHOGP84095 191 aa5.82□□□□□ -1.48
LIMA1-213ENST00000552720 PDE6HQ13956 83 aa5.82□□□□□ -1.48
LIMA1-213ENST00000552720 TWIST1Q15672 202 aa5.82□□□□□ -1.48
LIMA1-213ENST00000552720 VAMP3Q15836 100 aa5.82□□□□□ -1.48
LIMA1-213ENST00000552720 RNF182Q8N6D2 247 aa5.82□□□□□ -1.48
LIMA1-213ENST00000552720 TIMD4Q96H15 378 aa5.82□□□□□ -1.48
LIMA1-213ENST00000552720 IGHV3-49A0A0A0MS15 119 aa5.82□□□□□ -1.48
LIMA1-213ENST00000552720 IGHV2-70DA0A0C4DH43 119 aa5.82□□□□□ -1.48
LIMA1-213ENST00000552720 LINC01548A6NM66 108 aa5.82□□□□□ -1.48
LIMA1-213ENST00000552720 M0R1W7 72 aa5.82□□□□□ -1.48
LIMA1-213ENST00000552720 TMEM11P17152 192 aa5.82□□□□□ -1.48
LIMA1-213ENST00000552720 CACNG7P62955 275 aa5.82□□□□□ -1.48
LIMA1-213ENST00000552720 ECSCRQ19T08 205 aa5.82□□□□□ -1.48
LIMA1-213ENST00000552720 FBXL19-AS1Q494R0 122 aa5.82□□□□□ -1.48
LIMA1-213ENST00000552720 C11orf71Q6IPW1 123 aa5.82□□□□□ -1.48
LIMA1-213ENST00000552720 ORMDL3Q8N138 153 aa5.82□□□□□ -1.48
LIMA1-213ENST00000552720 Q8N6K4 173 aa5.82□□□□□ -1.48
LIMA1-213ENST00000552720 RABAC1Q9UI14 185 aa5.82□□□□□ -1.48
LIMA1-213ENST00000552720 SELENOKQ9Y6D0 94 aa5.82□□□□□ -1.48
LIMA1-213ENST00000552720 RPL7P18124 248 aaKnown RBP5.81□□□□□ -1.48
LIMA1-213ENST00000552720 PSG9Q00887 426 aa5.81□□□□□ -1.48
LIMA1-213ENST00000552720 Q6AWC8 147 aa5.81□□□□□ -1.48
LIMA1-213ENST00000552720 DEFB125Q8N687 156 aa5.81□□□□□ -1.48
LIMA1-213ENST00000552720 Q8N9W7 124 aa5.81□□□□□ -1.48
LIMA1-213ENST00000552720 U3KQK5 164 aa5.81□□□□□ -1.48
LIMA1-213ENST00000552720 CSMD2Q7Z408 3487 aa5.81□□□□□ -1.48
LIMA1-213ENST00000552720 A0A1B0GW15 77 aa5.81□□□□□ -1.48
LIMA1-213ENST00000552720 ORM1P02763 201 aa5.81□□□□□ -1.48
LIMA1-213ENST00000552720 COX8AP10176 69 aa5.81□□□□□ -1.48
LIMA1-213ENST00000552720 GATA1P15976 413 aaPredicted RBP5.81□□□□□ -1.48
LIMA1-213ENST00000552720 CKS2P33552 79 aa5.81□□□□□ -1.48
LIMA1-213ENST00000552720 PAX8Q06710 450 aa5.81□□□□□ -1.48
LIMA1-213ENST00000552720 C15orf32Q32M92 178 aa5.81□□□□□ -1.48
LIMA1-213ENST00000552720 PRSS57Q6UWY2 283 aa5.81□□□□□ -1.48
LIMA1-213ENST00000552720 Q6ZQT7 251 aa5.81□□□□□ -1.48
LIMA1-213ENST00000552720 FER1L6-AS1Q8NA97 138 aa5.81□□□□□ -1.48
LIMA1-213ENST00000552720 OR4C5Q8NGB2 326 aa5.81□□□□□ -1.48
LIMA1-213ENST00000552720 ZNF48Q96MX3 618 aaPredicted RBP5.81□□□□□ -1.48
LIMA1-213ENST00000552720 C18orf15Q96N68 181 aa5.81□□□□□ -1.48
LIMA1-213ENST00000552720 PSMG3-AS1Q96PY0 264 aa5.81□□□□□ -1.48
LIMA1-213ENST00000552720 MS4A6AQ9H2W1 248 aa5.81□□□□□ -1.48
LIMA1-213ENST00000552720 G3V318 75 aa5.8□□□□□ -1.48
LIMA1-213ENST00000552720 ZNF207O43670 478 aaKnown RBP5.8□□□□□ -1.48
LIMA1-213ENST00000552720 IGLC6P0CF74 106 aa5.8□□□□□ -1.48
LIMA1-213ENST00000552720 FGF6P10767 208 aa5.8□□□□□ -1.48
LIMA1-213ENST00000552720 UQCRFS1P47985 274 aa5.8□□□□□ -1.48
LIMA1-213ENST00000552720 HIST1H1AQ02539 215 aaPredicted RBP5.8□□□□□ -1.48
LIMA1-213ENST00000552720 NHLH1Q02575 133 aa5.8□□□□□ -1.48
LIMA1-213ENST00000552720 AMMECR1LQ6DCA0 310 aa5.8□□□□□ -1.48
LIMA1-213ENST00000552720 THYN1Q9P016 225 aa5.8□□□□□ -1.48
LIMA1-213ENST00000552720 TRAV8-6A0A0B4J262 113 aa5.8□□□□□ -1.48
LIMA1-213ENST00000552720 ATP6V0E1O15342 81 aa5.8□□□□□ -1.48
LIMA1-213ENST00000552720 CLEC3BP05452 202 aa5.8□□□□□ -1.48
LIMA1-213ENST00000552720 EVI2AP22794 236 aa5.8□□□□□ -1.48
LIMA1-213ENST00000552720 RBX1P62877 108 aa5.8□□□□□ -1.48
LIMA1-213ENST00000552720 SAPCD1Q5SSQ6 148 aa5.8□□□□□ -1.48
LIMA1-213ENST00000552720 C12orf54Q6X4T0 127 aa5.8□□□□□ -1.48
LIMA1-213ENST00000552720 IL17RELQ6ZVW7 336 aa5.8□□□□□ -1.48
LIMA1-213ENST00000552720 RNF185Q96GF1 192 aa5.8□□□□□ -1.48
LIMA1-213ENST00000552720 FLNCQ14315 2725 aa5.79□□□□□ -1.48
LIMA1-213ENST00000552720 HBDP02042 147 aa5.79□□□□□ -1.48
LIMA1-213ENST00000552720 EBI3Q14213 229 aa5.79□□□□□ -1.48
LIMA1-213ENST00000552720 CCDC144NLQ6NUI1 221 aa5.79□□□□□ -1.48
LIMA1-213ENST00000552720 AJUBAQ96IF1 538 aa5.79□□□□□ -1.48
LIMA1-213ENST00000552720 NAA38Q9BRA0 125 aaKnown RBP5.79□□□□□ -1.48
LIMA1-213ENST00000552720 SIRPDQ9H106 197 aa5.79□□□□□ -1.48
LIMA1-213ENST00000552720 DKK2Q9UBU2 259 aa5.79□□□□□ -1.48
LIMA1-213ENST00000552720 RAXQ9Y2V3 346 aa5.79□□□□□ -1.48
LIMA1-213ENST00000552720 CBY1Q9Y3M2 126 aa5.79□□□□□ -1.48
LIMA1-213ENST00000552720 BUB3O43684 328 aa5.79□□□□□ -1.48
LIMA1-213ENST00000552720 CLEC19AQ6UXS0 136 aa5.79□□□□□ -1.48
LIMA1-213ENST00000552720 COX8CQ7Z4L0 72 aa5.79□□□□□ -1.48
LIMA1-213ENST00000552720 PCP2Q8IVA1 136 aa5.79□□□□□ -1.48
LIMA1-213ENST00000552720 ZNF502Q8TBZ5 544 aa5.79□□□□□ -1.48
LIMA1-213ENST00000552720 CCDC140Q96MF4 163 aa5.79□□□□□ -1.48
LIMA1-213ENST00000552720 C11orf21Q9P2W6 132 aa5.79□□□□□ -1.48
LIMA1-213ENST00000552720 LINC00527Q9UJ94 153 aa5.79□□□□□ -1.48
LIMA1-213ENST00000552720 CLPSL1A2RUU4 121 aa5.78□□□□□ -1.48
LIMA1-213ENST00000552720 PCP4P48539 62 aa5.78□□□□□ -1.48
LIMA1-213ENST00000552720 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa5.78□□□□□ -1.48
LIMA1-213ENST00000552720 S100A7AQ86SG5 101 aa5.78□□□□□ -1.48
LIMA1-213ENST00000552720 IFI27L1Q96BM0 104 aa5.78□□□□□ -1.48
LIMA1-213ENST00000552720 CFAP46Q8IYW2 2715 aa5.78□□□□□ -1.48
LIMA1-213ENST00000552720 IGKV3D-20A0A0C4DH25 116 aa5.77□□□□□ -1.48
LIMA1-213ENST00000552720 CD5LO43866 347 aa5.77□□□□□ -1.48
LIMA1-213ENST00000552720 TRGV3P03979 118 aa5.77□□□□□ -1.48
LIMA1-213ENST00000552720 BMI1P35226 326 aa5.77□□□□□ -1.48
LIMA1-213ENST00000552720 SAA4P35542 130 aa5.77□□□□□ -1.48
LIMA1-213ENST00000552720 LGALS9BQ3B8N2 356 aa5.77□□□□□ -1.48
LIMA1-213ENST00000552720 TMEM97Q5BJF2 176 aa5.77□□□□□ -1.48
LIMA1-213ENST00000552720 LGALS9CQ6DKI2 356 aa5.77□□□□□ -1.48
LIMA1-213ENST00000552720 TTTY13Q9BZ97 58 aa5.77□□□□□ -1.48
LIMA1-213ENST00000552720 SPG11Q96JI7 2443 aa5.77□□□□□ -1.49
LIMA1-213ENST00000552720 AGRNO00468 2067 aa5.77□□□□□ -1.49
LIMA1-213ENST00000552720 IGHV3OR16-10A0A075B7F0 116 aa5.77□□□□□ -1.49
LIMA1-213ENST00000552720 C7orf71A4D174 169 aa5.77□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 81.5 ms