RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 PIP4P2Q8N4L2 257 aa11.86□□□□□ -0.51
CUX1-214ENST00000550008 THAP8Q8NA92 274 aa11.86□□□□□ -0.51
CUX1-214ENST00000550008 ZNF462Q96JM2 2506 aa11.86□□□□□ -0.51
CUX1-214ENST00000550008 IGLV1-47P01700 117 aa11.86□□□□□ -0.51
CUX1-214ENST00000550008 YPEL3P61236 119 aaPredicted RBP11.86□□□□□ -0.51
CUX1-214ENST00000550008 FAM110DQ8TAY7 271 aaPredicted RBP11.86□□□□□ -0.51
CUX1-214ENST00000550008 LINC01587Q99440 93 aa11.86□□□□□ -0.51
CUX1-214ENST00000550008 NPSP0C0P6 89 aa11.85□□□□□ -0.51
CUX1-214ENST00000550008 SAMD13Q5VXD3 122 aa11.85□□□□□ -0.51
CUX1-214ENST00000550008 IFI27L1Q96BM0 104 aa11.85□□□□□ -0.51
CUX1-214ENST00000550008 DNAH14Q0VDD8 3507 aa11.85□□□□□ -0.51
CUX1-214ENST00000550008 IFI27P40305 119 aaPredicted RBP11.85□□□□□ -0.51
CUX1-214ENST00000550008 C14orf178Q8N769 122 aaPredicted RBP11.85□□□□□ -0.51
CUX1-214ENST00000550008 RCHY1Q96PM5 261 aa11.85□□□□□ -0.51
CUX1-214ENST00000550008 VGLL1Q99990 258 aa11.85□□□□□ -0.51
CUX1-214ENST00000550008 VCANP13611 3396 aa11.85□□□□□ -0.51
CUX1-214ENST00000550008 LOC107984156A0A0G2JMH3 177 aa11.85□□□□□ -0.51
CUX1-214ENST00000550008 OR11H12B2RN74 326 aa11.85□□□□□ -0.51
CUX1-214ENST00000550008 SPRY2O43597 315 aa11.85□□□□□ -0.51
CUX1-214ENST00000550008 TYMSP04818 313 aa11.85□□□□□ -0.51
CUX1-214ENST00000550008 RRN3P1Q2M238 152 aa11.85□□□□□ -0.51
CUX1-214ENST00000550008 TMEM95Q3KNT9 176 aa11.85□□□□□ -0.51
CUX1-214ENST00000550008 IL17RELQ6ZVW7 336 aa11.85□□□□□ -0.51
CUX1-214ENST00000550008 ARL17AQ8IVW1 177 aa11.85□□□□□ -0.51
CUX1-214ENST00000550008 OR11H1Q8NG94 326 aa11.85□□□□□ -0.51
CUX1-214ENST00000550008 OR11H2Q8NH07 326 aa11.85□□□□□ -0.51
CUX1-214ENST00000550008 ZC2HC1AQ96GY0 325 aa11.85□□□□□ -0.51
CUX1-214ENST00000550008 HOXB4P17483 251 aaPredicted RBP11.84□□□□□ -0.51
CUX1-214ENST00000550008 MEGF9Q9H1U4 602 aa11.84□□□□□ -0.51
CUX1-214ENST00000550008 IGHV3-73A0A0B4J1V6 119 aa11.84□□□□□ -0.51
CUX1-214ENST00000550008 LYPD1Q8N2G4 141 aa11.84□□□□□ -0.51
CUX1-214ENST00000550008 Q8N7P7 452 aa11.84□□□□□ -0.51
CUX1-214ENST00000550008 SRSF8Q9BRL6 282 aaKnown RBP11.84□□□□□ -0.51
CUX1-214ENST00000550008 K7EIM0 57 aa11.84□□□□□ -0.51
CUX1-214ENST00000550008 RPL13AP40429 203 aaKnown RBP11.84□□□□□ -0.51
CUX1-214ENST00000550008 Q6ZWC4 215 aa11.84□□□□□ -0.51
CUX1-214ENST00000550008 LAMA1P25391 3075 aa11.84□□□□□ -0.51
CUX1-214ENST00000550008 CR1LQ2VPA4 569 aa11.83□□□□□ -0.51
CUX1-214ENST00000550008 JMJD8Q96S16 334 aa11.83□□□□□ -0.51
CUX1-214ENST00000550008 NUPR1O60356 82 aa11.83□□□□□ -0.52
CUX1-214ENST00000550008 IGLV2-23P01705 113 aa11.83□□□□□ -0.52
CUX1-214ENST00000550008 PF4P02776 101 aa11.83□□□□□ -0.52
CUX1-214ENST00000550008 H3BRN7 92 aa11.83□□□□□ -0.52
CUX1-214ENST00000550008 SFTA2Q6UW10 78 aa11.83□□□□□ -0.52
CUX1-214ENST00000550008 PKD1L2Q7Z442 2459 aa11.83□□□□□ -0.52
CUX1-214ENST00000550008 PRRC2AP48634 2157 aaKnown RBP11.83□□□□□ -0.52
CUX1-214ENST00000550008 NAA38Q9BRA0 125 aaKnown RBP11.83□□□□□ -0.52
CUX1-214ENST00000550008 POLR3KQ9Y2Y1 108 aaPredicted RBP11.83□□□□□ -0.52
CUX1-214ENST00000550008 NPIPB6E9PJ23 425 aa11.82□□□□□ -0.52
CUX1-214ENST00000550008 FAM167A-AS1Q96KT0 104 aa11.82□□□□□ -0.52
CUX1-214ENST00000550008 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.82□□□□□ -0.52
CUX1-214ENST00000550008 IGHV4-39P01824 125 aa11.82□□□□□ -0.52
CUX1-214ENST00000550008 C9orf139Q6ZV77 190 aa11.82□□□□□ -0.52
CUX1-214ENST00000550008 IGHV4-30-2A0A087WSY4 118 aa11.82□□□□□ -0.52
CUX1-214ENST00000550008 IGHV4-38-2P0DP08 117 aa11.81□□□□□ -0.52
CUX1-214ENST00000550008 BLCAPP62952 87 aa11.81□□□□□ -0.52
CUX1-214ENST00000550008 LYRM7Q5U5X0 104 aa11.81□□□□□ -0.52
CUX1-214ENST00000550008 AMMECR1LQ6DCA0 310 aa11.81□□□□□ -0.52
CUX1-214ENST00000550008 OR11H6Q8NGC7 330 aa11.81□□□□□ -0.52
CUX1-214ENST00000550008 IGHV7-81A0A0B4J1V7 117 aa11.81□□□□□ -0.52
CUX1-214ENST00000550008 ATP5LO75964 103 aa11.81□□□□□ -0.52
CUX1-214ENST00000550008 PDE6HQ13956 83 aa11.81□□□□□ -0.52
CUX1-214ENST00000550008 PRR25Q96S07 402 aa11.81□□□□□ -0.52
CUX1-214ENST00000550008 OVOL1O14753 267 aa11.81□□□□□ -0.52
CUX1-214ENST00000550008 CHCHD1Q96BP2 118 aaKnown RBP11.81□□□□□ -0.52
CUX1-214ENST00000550008 LINC01356Q8N9X3 169 aa11.81□□□□□ -0.52
CUX1-214ENST00000550008 A0A087WWL8 130 aa11.8□□□□□ -0.52
CUX1-214ENST00000550008 F6UB75 175 aa11.8□□□□□ -0.52
CUX1-214ENST00000550008 I3L2K1 104 aa11.8□□□□□ -0.52
CUX1-214ENST00000550008 C8orf86Q6ZUL3 223 aa11.8□□□□□ -0.52
CUX1-214ENST00000550008 TNFRSF18Q9Y5U5 241 aa11.8□□□□□ -0.52
CUX1-214ENST00000550008 C8orf31Q8N9H6 132 aa11.8□□□□□ -0.52
CUX1-214ENST00000550008 Q0VG73 95 aa11.8□□□□□ -0.52
CUX1-214ENST00000550008 RASL11AQ6T310 242 aa11.8□□□□□ -0.52
CUX1-214ENST00000550008 NXT2Q9NPJ8 142 aaKnown RBP11.8□□□□□ -0.52
CUX1-214ENST00000550008 DAZ1Q9NQZ3 744 aaKnown RBP11.8□□□□□ -0.52
CUX1-214ENST00000550008 PPBPP02775 128 aa11.79□□□□□ -0.52
CUX1-214ENST00000550008 ACANP16112 2415 aa11.79□□□□□ -0.52
CUX1-214ENST00000550008 IGKV3D-20A0A0C4DH25 116 aa11.79□□□□□ -0.52
CUX1-214ENST00000550008 SYS1-DBNDD2H3BUS1 97 aa11.79□□□□□ -0.52
CUX1-214ENST00000550008 DSCR9P59020 149 aa11.79□□□□□ -0.52
CUX1-214ENST00000550008 NSUN5P1Q3KNT7 163 aa11.79□□□□□ -0.52
CUX1-214ENST00000550008 MGAQ8IWI9 3026 aa11.79□□□□□ -0.52
CUX1-214ENST00000550008 TEX22C9J3V5 150 aa11.79□□□□□ -0.52
CUX1-214ENST00000550008 SMIM27A0A1W2PRY6 76 aa11.79□□□□□ -0.52
CUX1-214ENST00000550008 IGHV4-59P01825 116 aa11.79□□□□□ -0.52
CUX1-214ENST00000550008 PAX1P15863 534 aa11.79□□□□□ -0.52
CUX1-214ENST00000550008 CDSNQ15517 529 aa11.79□□□□□ -0.52
CUX1-214ENST00000550008 PRSS57Q6UWY2 283 aa11.79□□□□□ -0.52
CUX1-214ENST00000550008 USMG5Q96IX5 58 aa11.79□□□□□ -0.52
CUX1-214ENST00000550008 CENPVL3A0A0U1RRI6 287 aa11.78□□□□□ -0.52
CUX1-214ENST00000550008 UBE2V1Q13404 147 aa11.78□□□□□ -0.52
CUX1-214ENST00000550008 EIF4EBP1Q13541 118 aaPredicted RBP11.78□□□□□ -0.52
CUX1-214ENST00000550008 CELSR3Q9NYQ7 3312 aa11.78□□□□□ -0.52
CUX1-214ENST00000550008 SMAGPQ0VAQ4 97 aa11.78□□□□□ -0.52
CUX1-214ENST00000550008 GTSCR1Q86UQ5 136 aa11.78□□□□□ -0.52
CUX1-214ENST00000550008 KLHL30-AS1Q8NEE0 82 aa11.78□□□□□ -0.52
CUX1-214ENST00000550008 A0A087X0K7 114 aa11.78□□□□□ -0.52
CUX1-214ENST00000550008 C19orf84I3L1E1 186 aa11.78□□□□□ -0.52
CUX1-214ENST00000550008 MTURNQ8N3F0 131 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms