RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 RPEL1Q2QD12 228 aa5.4□□□□□ -1.54
DEPDC4-208ENST00000549341 MORN5Q5VZ52 161 aa5.4□□□□□ -1.54
DEPDC4-208ENST00000549341 ZNF329Q86UD4 541 aa5.4□□□□□ -1.54
DEPDC4-208ENST00000549341 C15orf54Q8N8G6 183 aa5.4□□□□□ -1.54
DEPDC4-208ENST00000549341 SREK1IP1Q8N9Q2 155 aaPredicted RBP5.4□□□□□ -1.54
DEPDC4-208ENST00000549341 FMC1Q96HJ9 113 aa5.4□□□□□ -1.54
DEPDC4-208ENST00000549341 SLC50A1Q9BRV3 221 aa5.4□□□□□ -1.54
DEPDC4-208ENST00000549341 ATG101Q9BSB4 218 aa5.4□□□□□ -1.54
DEPDC4-208ENST00000549341 TMEM242Q9NWH2 141 aa5.4□□□□□ -1.54
DEPDC4-208ENST00000549341 EPDR1Q9UM22 224 aa5.4□□□□□ -1.54
DEPDC4-208ENST00000549341 ZNF256Q9Y2P7 627 aaPredicted RBP5.4□□□□□ -1.54
DEPDC4-208ENST00000549341 TRBV19A0A075B6N1 114 aa5.39□□□□□ -1.55
DEPDC4-208ENST00000549341 A0A087X0K7 114 aa5.39□□□□□ -1.55
DEPDC4-208ENST00000549341 IGHV3-35A0A0C4DH35 117 aa5.39□□□□□ -1.55
DEPDC4-208ENST00000549341 ZNF320A2RRD8 509 aa5.39□□□□□ -1.55
DEPDC4-208ENST00000549341 GGTLC3B5MD39 225 aa5.39□□□□□ -1.55
DEPDC4-208ENST00000549341 PPP5D1E7EU14 171 aa5.39□□□□□ -1.55
DEPDC4-208ENST00000549341 H7BYZ3 331 aa5.39□□□□□ -1.55
DEPDC4-208ENST00000549341 TSPAN4O14817 238 aa5.39□□□□□ -1.55
DEPDC4-208ENST00000549341 SCO1O75880 301 aa5.39□□□□□ -1.55
DEPDC4-208ENST00000549341 FRMD6-AS1P0C7T7 363 aa5.39□□□□□ -1.55
DEPDC4-208ENST00000549341 IGLC2P0DOY2 106 aa5.39□□□□□ -1.55
DEPDC4-208ENST00000549341 MYCNOSP40205 109 aa5.39□□□□□ -1.55
DEPDC4-208ENST00000549341 RPL35P42766 123 aaKnown RBP5.39□□□□□ -1.55
DEPDC4-208ENST00000549341 RPL23P62829 140 aaKnown RBP5.39□□□□□ -1.55
DEPDC4-208ENST00000549341 DEFB136Q30KP8 78 aa5.39□□□□□ -1.55
DEPDC4-208ENST00000549341 LEMD1Q68G75 181 aa5.39□□□□□ -1.55
DEPDC4-208ENST00000549341 KCNIP4Q6PIL6 250 aa5.39□□□□□ -1.55
DEPDC4-208ENST00000549341 ATRAIDQ6UW56 229 aa5.39□□□□□ -1.55
DEPDC4-208ENST00000549341 GPHB5Q86YW7 130 aa5.39□□□□□ -1.55
DEPDC4-208ENST00000549341 RNF152Q8N8N0 203 aa5.39□□□□□ -1.55
DEPDC4-208ENST00000549341 KLK15Q9H2R5 256 aa5.39□□□□□ -1.55
DEPDC4-208ENST00000549341 ZNF586Q9NXT0 402 aa5.39□□□□□ -1.55
DEPDC4-208ENST00000549341 HECTD4Q9Y4D8 3996 aa5.39□□□□□ -1.55
DEPDC4-208ENST00000549341 BUB3O43684 328 aa5.38□□□□□ -1.55
DEPDC4-208ENST00000549341 CDX1P47902 265 aaPredicted RBP5.38□□□□□ -1.55
DEPDC4-208ENST00000549341 TMEM183BQ1AE95 376 aa5.38□□□□□ -1.55
DEPDC4-208ENST00000549341 CENPWQ5EE01 88 aa5.38□□□□□ -1.55
DEPDC4-208ENST00000549341 C9orf66Q5T8R8 295 aa5.38□□□□□ -1.55
DEPDC4-208ENST00000549341 SIGLEC15Q6ZMC9 328 aa5.38□□□□□ -1.55
DEPDC4-208ENST00000549341 BAGE2Q86Y30 109 aa5.38□□□□□ -1.55
DEPDC4-208ENST00000549341 C2CD4CQ8TF44 421 aa5.38□□□□□ -1.55
DEPDC4-208ENST00000549341 MRPL53Q96EL3 112 aaKnown RBP5.38□□□□□ -1.55
DEPDC4-208ENST00000549341 ZNF414Q96IQ9 312 aa5.38□□□□□ -1.55
DEPDC4-208ENST00000549341 RAX2Q96IS3 184 aa5.38□□□□□ -1.55
DEPDC4-208ENST00000549341 NDFIP1Q9BT67 221 aa5.38□□□□□ -1.55
DEPDC4-208ENST00000549341 DAZ1Q9NQZ3 744 aaKnown RBP5.38□□□□□ -1.55
DEPDC4-208ENST00000549341 RPH3ALQ9UNE2 315 aa5.38□□□□□ -1.55
DEPDC4-208ENST00000549341 TRBV6-1A0A0K0K1D8 114 aa5.37□□□□□ -1.55
DEPDC4-208ENST00000549341 DNASE2O00115 360 aaPredicted RBP5.37□□□□□ -1.55
DEPDC4-208ENST00000549341 LGALS9O00182 355 aa5.37□□□□□ -1.55
DEPDC4-208ENST00000549341 MRPS12O15235 138 aaKnown RBP5.37□□□□□ -1.55
DEPDC4-208ENST00000549341 TCRAP04437 139 aa5.37□□□□□ -1.55
DEPDC4-208ENST00000549341 MGST1P10620 155 aaKnown RBP5.37□□□□□ -1.55
DEPDC4-208ENST00000549341 ID1P41134 155 aa5.37□□□□□ -1.55
DEPDC4-208ENST00000549341 ERVFC1-1P60608 527 aa5.37□□□□□ -1.55
DEPDC4-208ENST00000549341 RNF212Q495C1 297 aa5.37□□□□□ -1.55
DEPDC4-208ENST00000549341 TMEM88Q6PEY1 159 aa5.37□□□□□ -1.55
DEPDC4-208ENST00000549341 C16orf54Q6UWD8 224 aa5.37□□□□□ -1.55
DEPDC4-208ENST00000549341 LINC01551Q86U37 167 aa5.37□□□□□ -1.55
DEPDC4-208ENST00000549341 TMEM75Q8N9X5 138 aa5.37□□□□□ -1.55
DEPDC4-208ENST00000549341 OR10G8Q8NGN5 311 aa5.37□□□□□ -1.55
DEPDC4-208ENST00000549341 MYOZ3Q8TDC0 251 aa5.37□□□□□ -1.55
DEPDC4-208ENST00000549341 C4orf3Q8WVX3 66 aa5.37□□□□□ -1.55
DEPDC4-208ENST00000549341 ISOC2Q96AB3 205 aa5.37□□□□□ -1.55
DEPDC4-208ENST00000549341 DAZAP1Q96EP5 407 aaKnown RBP5.37□□□□□ -1.55
DEPDC4-208ENST00000549341 SFRP2Q96HF1 295 aa5.37□□□□□ -1.55
DEPDC4-208ENST00000549341 IMMP2LQ96T52 175 aa5.37□□□□□ -1.55
DEPDC4-208ENST00000549341 PEMTQ9UBM1 199 aa5.37□□□□□ -1.55
DEPDC4-208ENST00000549341 ZFP30Q9Y2G7 519 aa5.37□□□□□ -1.55
DEPDC4-208ENST00000549341 IGHV7-4-1A0A0J9YVY3 117 aa5.36□□□□□ -1.55
DEPDC4-208ENST00000549341 LINC01619G3V211 115 aa5.36□□□□□ -1.55
DEPDC4-208ENST00000549341 CCL24O00175 119 aa5.36□□□□□ -1.55
DEPDC4-208ENST00000549341 ZNF207O43670 478 aaKnown RBP5.36□□□□□ -1.55
DEPDC4-208ENST00000549341 TRBV12-3P01733 135 aa5.36□□□□□ -1.55
DEPDC4-208ENST00000549341 CT45A10P0DMU9 189 aa5.36□□□□□ -1.55
DEPDC4-208ENST00000549341 RPL11P62913 178 aaKnown RBP5.36□□□□□ -1.55
DEPDC4-208ENST00000549341 PAFAH1B2P68402 229 aa5.36□□□□□ -1.55
DEPDC4-208ENST00000549341 SAPCD1Q5SSQ6 148 aa5.36□□□□□ -1.55
DEPDC4-208ENST00000549341 GOLT1AQ6ZVE7 132 aa5.36□□□□□ -1.55
DEPDC4-208ENST00000549341 CBLN2Q8IUK8 224 aa5.36□□□□□ -1.55
DEPDC4-208ENST00000549341 OCC1Q8TAD7 63 aa5.36□□□□□ -1.55
DEPDC4-208ENST00000549341 C16orf92Q96LL3 132 aa5.36□□□□□ -1.55
DEPDC4-208ENST00000549341 EDA2RQ9HAV5 297 aa5.36□□□□□ -1.55
DEPDC4-208ENST00000549341 OSTCQ9NRP0 149 aa5.36□□□□□ -1.55
DEPDC4-208ENST00000549341 KLF12Q9Y4X4 402 aa5.36□□□□□ -1.55
DEPDC4-208ENST00000549341 TRAV9-1A0A075B6T8 112 aa5.35□□□□□ -1.55
DEPDC4-208ENST00000549341 IGHV3OR16-8A0A075B7F1 116 aa5.35□□□□□ -1.55
DEPDC4-208ENST00000549341 IGHV3-66A0A0C4DH42 116 aa5.35□□□□□ -1.55
DEPDC4-208ENST00000549341 RBAKDNA6NC62 111 aa5.35□□□□□ -1.55
DEPDC4-208ENST00000549341 DIRC3C9JPN6 131 aa5.35□□□□□ -1.55
DEPDC4-208ENST00000549341 H3BTX0 84 aa5.35□□□□□ -1.55
DEPDC4-208ENST00000549341 ISLRO14498 428 aa5.35□□□□□ -1.55
DEPDC4-208ENST00000549341 GCGP01275 180 aa5.35□□□□□ -1.55
DEPDC4-208ENST00000549341 SNRPCP09234 159 aaKnown RBP5.35□□□□□ -1.55
DEPDC4-208ENST00000549341 GNG5P63218 68 aa5.35□□□□□ -1.55
DEPDC4-208ENST00000549341 FLI1Q01543 452 aaPredicted RBP5.35□□□□□ -1.55
DEPDC4-208ENST00000549341 PSG3Q16557 428 aa5.35□□□□□ -1.55
DEPDC4-208ENST00000549341 IBA57Q5T440 356 aaKnown RBP5.35□□□□□ -1.55
DEPDC4-208ENST00000549341 EXOC3-AS1Q8N2X6 119 aa5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms