RNA–Protein interactions for RNA: ENST00000549139.5

CHMP1A-206, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 812 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-206ENST00000549139 ODF3Q96PU9 254 aa11.28□□□□□ -0.6
CHMP1A-206ENST00000549139 TRAV12-2A0A075B6T6 113 aa11.27□□□□□ -0.61
CHMP1A-206ENST00000549139 TMEM189A5PLL7 270 aa11.27□□□□□ -0.61
CHMP1A-206ENST00000549139 EIF3GO75821 320 aaKnown RBP eCLIP11.27□□□□□ -0.61
CHMP1A-206ENST00000549139 HBE1P02100 147 aa11.27□□□□□ -0.61
CHMP1A-206ENST00000549139 CT45A10P0DMU9 189 aa11.27□□□□□ -0.61
CHMP1A-206ENST00000549139 C9orf47Q6ZRZ4 202 aa11.27□□□□□ -0.61
CHMP1A-206ENST00000549139 LINC00336Q6ZUF6 198 aa11.27□□□□□ -0.61
CHMP1A-206ENST00000549139 BAP18Q8IXM2 172 aa11.27□□□□□ -0.61
CHMP1A-206ENST00000549139 ARPC5LQ9BPX5 153 aa11.27□□□□□ -0.61
CHMP1A-206ENST00000549139 TMEM208Q9BTX3 173 aa11.27□□□□□ -0.61
CHMP1A-206ENST00000549139 ACTR3CQ9C0K3 210 aaPredicted RBP11.27□□□□□ -0.61
CHMP1A-206ENST00000549139 Q9H3A6 140 aa11.27□□□□□ -0.61
CHMP1A-206ENST00000549139 HMGB3O15347 200 aaKnown RBP11.26□□□□□ -0.61
CHMP1A-206ENST00000549139 TCTAP57738 103 aa11.26□□□□□ -0.61
CHMP1A-206ENST00000549139 RRN3P1Q2M238 152 aa11.26□□□□□ -0.61
CHMP1A-206ENST00000549139 TMEM256Q8N2U0 113 aa11.26□□□□□ -0.61
CHMP1A-206ENST00000549139 C20orf144Q9BQM9 153 aa11.26□□□□□ -0.61
CHMP1A-206ENST00000549139 KRTAP4-5Q9BYR2 181 aa11.26□□□□□ -0.61
CHMP1A-206ENST00000549139 AGPAT4-IT1Q9H0P7 198 aa11.26□□□□□ -0.61
CHMP1A-206ENST00000549139 APLNQ9ULZ1 77 aa11.26□□□□□ -0.61
CHMP1A-206ENST00000549139 LEPP41159 167 aa11.25□□□□□ -0.61
CHMP1A-206ENST00000549139 CSN1S1P47710 185 aa11.25□□□□□ -0.61
CHMP1A-206ENST00000549139 ERCC8Q13216 396 aa11.25□□□□□ -0.61
CHMP1A-206ENST00000549139 TCTE3Q8IZS6 198 aa11.25□□□□□ -0.61
CHMP1A-206ENST00000549139 SUN5Q8TC36 379 aa11.25□□□□□ -0.61
CHMP1A-206ENST00000549139 RXFP4Q8TDU9 374 aa11.25□□□□□ -0.61
CHMP1A-206ENST00000549139 OTORQ9NRC9 128 aa11.25□□□□□ -0.61
CHMP1A-206ENST00000549139 HSPG2P98160 4391 aa11.25□□□□□ -0.61
CHMP1A-206ENST00000549139 RBAKDNA6NC62 111 aa11.24□□□□□ -0.61
CHMP1A-206ENST00000549139 PGPA6NDG6 321 aa11.24□□□□□ -0.61
CHMP1A-206ENST00000549139 SLC25A5P05141 298 aaKnown RBP11.24□□□□□ -0.61
CHMP1A-206ENST00000549139 ARL14EPLP0DKL9 152 aa11.24□□□□□ -0.61
CHMP1A-206ENST00000549139 FAM74A1Q5RGS3 127 aa11.24□□□□□ -0.61
CHMP1A-206ENST00000549139 AKR1C8PQ5T2L2 129 aa11.24□□□□□ -0.61
CHMP1A-206ENST00000549139 ARL6IP6Q8N6S5 226 aa11.24□□□□□ -0.61
CHMP1A-206ENST00000549139 C2CD4CQ8TF44 421 aa11.24□□□□□ -0.61
CHMP1A-206ENST00000549139 FAM19A4Q96LR4 140 aa11.24□□□□□ -0.61
CHMP1A-206ENST00000549139 LINC01587Q99440 93 aa11.24□□□□□ -0.61
CHMP1A-206ENST00000549139 LOC102723971A0A1B0GUV8 181 aa11.23□□□□□ -0.61
CHMP1A-206ENST00000549139 KANTRA0A1W2PQU2 76 aa11.23□□□□□ -0.61
CHMP1A-206ENST00000549139 CXorf1O96002 111 aa11.23□□□□□ -0.61
CHMP1A-206ENST00000549139 GCHFRP30047 84 aa11.23□□□□□ -0.61
CHMP1A-206ENST00000549139 KIR3DS1Q14943 382 aa11.23□□□□□ -0.61
CHMP1A-206ENST00000549139 TMEM78Q5T7P6 136 aa11.23□□□□□ -0.61
CHMP1A-206ENST00000549139 VGLL1Q99990 258 aa11.23□□□□□ -0.61
CHMP1A-206ENST00000549139 ZNF492Q9P255 531 aa11.23□□□□□ -0.61
CHMP1A-206ENST00000549139 IGKV2-40A0A087WW87 121 aaPredicted RBP11.22□□□□□ -0.61
CHMP1A-206ENST00000549139 CTXND1A0A1B0GTU2 59 aa11.22□□□□□ -0.61
CHMP1A-206ENST00000549139 ZNF705GA8MUZ8 300 aaPredicted RBP11.22□□□□□ -0.61
CHMP1A-206ENST00000549139 DIRC3C9JPN6 131 aa11.22□□□□□ -0.61
CHMP1A-206ENST00000549139 C11orf94C9JXX5 98 aa11.22□□□□□ -0.61
CHMP1A-206ENST00000549139 H7BYZ3 331 aa11.22□□□□□ -0.61
CHMP1A-206ENST00000549139 BCL2L11O43521 198 aa11.22□□□□□ -0.61
CHMP1A-206ENST00000549139 IGKV2D-40P01614 121 aaPredicted RBP11.22□□□□□ -0.61
CHMP1A-206ENST00000549139 NMBP08949 121 aa11.22□□□□□ -0.61
CHMP1A-206ENST00000549139 SPART-AS1P0CW21 52 aa11.22□□□□□ -0.61
CHMP1A-206ENST00000549139 TAS2R60P59551 318 aa11.22□□□□□ -0.61
CHMP1A-206ENST00000549139 GFI1BQ5VTD9 330 aa11.22□□□□□ -0.61
CHMP1A-206ENST00000549139 TMEM167BQ9NRX6 74 aa11.22□□□□□ -0.61
CHMP1A-206ENST00000549139 CELA1Q9UNI1 258 aa11.22□□□□□ -0.61
CHMP1A-206ENST00000549139 TRBV7-9A0A0J9YWB2 115 aa11.21□□□□□ -0.61
CHMP1A-206ENST00000549139 TEX48A0A1B0GUV7 120 aa11.21□□□□□ -0.61
CHMP1A-206ENST00000549139 KLLNB2CW77 178 aa11.21□□□□□ -0.61
CHMP1A-206ENST00000549139 SEC11BP0C7V7 166 aa11.21□□□□□ -0.61
CHMP1A-206ENST00000549139 CRISP2P16562 243 aa11.21□□□□□ -0.61
CHMP1A-206ENST00000549139 EMP1P54849 157 aa11.21□□□□□ -0.61
CHMP1A-206ENST00000549139 EIF5AP63241 154 aaKnown RBP11.21□□□□□ -0.61
CHMP1A-206ENST00000549139 ZNF726P1Q15940 193 aa11.21□□□□□ -0.61
CHMP1A-206ENST00000549139 C12orf74Q32Q52 190 aa11.21□□□□□ -0.61
CHMP1A-206ENST00000549139 TMUB2Q71RG4 321 aa11.21□□□□□ -0.61
CHMP1A-206ENST00000549139 SSX7Q7RTT5 188 aa11.21□□□□□ -0.61
CHMP1A-206ENST00000549139 CMTM2Q8TAZ6 248 aa11.21□□□□□ -0.61
CHMP1A-206ENST00000549139 ZNF471Q9BX82 626 aaPredicted RBP11.21□□□□□ -0.61
CHMP1A-206ENST00000549139 DKK2Q9UBU2 259 aa11.21□□□□□ -0.61
CHMP1A-206ENST00000549139 J3KRW8 73 aa11.2□□□□□ -0.62
CHMP1A-206ENST00000549139 C1QBP02746 253 aa11.2□□□□□ -0.62
CHMP1A-206ENST00000549139 PRM2P04554 102 aa11.2□□□□□ -0.62
CHMP1A-206ENST00000549139 AZU1P20160 251 aa11.2□□□□□ -0.62
CHMP1A-206ENST00000549139 ZNF138P52744 262 aa11.2□□□□□ -0.62
CHMP1A-206ENST00000549139 HYLS1Q96M11 299 aa11.2□□□□□ -0.62
CHMP1A-206ENST00000549139 YTHDF2Q9Y5A9 579 aaKnown RBP11.2□□□□□ -0.62
CHMP1A-206ENST00000549139 TRAV12-3A0A0B4J271 114 aa11.19□□□□□ -0.62
CHMP1A-206ENST00000549139 C7orf71A4D174 169 aa11.19□□□□□ -0.62
CHMP1A-206ENST00000549139 GPX1P07203 203 aa11.19□□□□□ -0.62
CHMP1A-206ENST00000549139 LGALSLQ3ZCW2 172 aaPredicted RBP11.19□□□□□ -0.62
CHMP1A-206ENST00000549139 FAM222AQ5U5X8 452 aa11.19□□□□□ -0.62
CHMP1A-206ENST00000549139 ZNF493Q6ZR52 646 aa11.19□□□□□ -0.62
CHMP1A-206ENST00000549139 Q6ZTC4 211 aa11.19□□□□□ -0.62
CHMP1A-206ENST00000549139 TMED6Q8WW62 240 aa11.19□□□□□ -0.62
CHMP1A-206ENST00000549139 NIPSNAP3BQ9BS92 247 aa11.19□□□□□ -0.62
CHMP1A-206ENST00000549139 LENEPQ9Y5L5 61 aa11.19□□□□□ -0.62
CHMP1A-206ENST00000549139 TRAV10A0A0B4J240 114 aa11.18□□□□□ -0.62
CHMP1A-206ENST00000549139 A0A1W2PRE2 83 aa11.18□□□□□ -0.62
CHMP1A-206ENST00000549139 IGLL5B9A064 214 aa11.18□□□□□ -0.62
CHMP1A-206ENST00000549139 UMAD1C9J7I0 102 aa11.18□□□□□ -0.62
CHMP1A-206ENST00000549139 RTL8CO15255 209 aa11.18□□□□□ -0.62
CHMP1A-206ENST00000549139 PFDN1O60925 122 aa11.18□□□□□ -0.62
CHMP1A-206ENST00000549139 ZNF324O75467 553 aaPredicted RBP11.18□□□□□ -0.62
CHMP1A-206ENST00000549139 HTN1P15515 57 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 78.6 ms