RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-210ENST00000541488 OR51D1Q8NGF3 324 aa0.67□□□□□ -2.3
PRKDC-210ENST00000541488 OR4D11Q8NGI4 311 aa0.67□□□□□ -2.3
PRKDC-210ENST00000541488 SCGB3A1Q96QR1 104 aa0.67□□□□□ -2.3
PRKDC-210ENST00000541488 SERPINI1Q99574 410 aa0.67□□□□□ -2.3
PRKDC-210ENST00000541488 DERL1Q9BUN8 251 aa0.67□□□□□ -2.3
PRKDC-210ENST00000541488 CISHQ9NSE2 258 aa0.67□□□□□ -2.3
PRKDC-210ENST00000541488 OR5AC2Q9NZP5 309 aa0.67□□□□□ -2.3
PRKDC-210ENST00000541488 CKLFQ9UBR5 152 aa0.67□□□□□ -2.3
PRKDC-210ENST00000541488 PKHD1L1Q86WI1 4243 aa0.66□□□□□ -2.3
PRKDC-210ENST00000541488 IGKV2D-26A0A0A0MRZ7 120 aa0.66□□□□□ -2.3
PRKDC-210ENST00000541488 A0A0D9SG52 128 aa0.66□□□□□ -2.3
PRKDC-210ENST00000541488 GOLGA6L19H0YKK7 550 aa0.66□□□□□ -2.3
PRKDC-210ENST00000541488 K7EIL1 84 aa0.66□□□□□ -2.3
PRKDC-210ENST00000541488 HCRTO43612 131 aa0.66□□□□□ -2.3
PRKDC-210ENST00000541488 NIPSNAP2O75323 286 aa0.66□□□□□ -2.3
PRKDC-210ENST00000541488 OR5F1O95221 314 aa0.66□□□□□ -2.3
PRKDC-210ENST00000541488 LY6G6CO95867 125 aa0.66□□□□□ -2.3
PRKDC-210ENST00000541488 IGKV1-5P01602 117 aa0.66□□□□□ -2.3
PRKDC-210ENST00000541488 HLA-DRB1P01911 266 aa0.66□□□□□ -2.3
PRKDC-210ENST00000541488 SERPINA6P08185 405 aa0.66□□□□□ -2.3
PRKDC-210ENST00000541488 HTR1AP08908 422 aa0.66□□□□□ -2.3
PRKDC-210ENST00000541488 UBBP0CG47 229 aa0.66□□□□□ -2.3
PRKDC-210ENST00000541488 COX6A1P12074 109 aa0.66□□□□□ -2.3
PRKDC-210ENST00000541488 SNRPD2P62316 118 aaKnown RBP0.66□□□□□ -2.3
PRKDC-210ENST00000541488 UBE2IP63279 158 aaKnown RBP0.66□□□□□ -2.3
PRKDC-210ENST00000541488 HBA1P69905 142 aa0.66□□□□□ -2.3
PRKDC-210ENST00000541488 PLCXD2Q0VAA5 305 aa0.66□□□□□ -2.3
PRKDC-210ENST00000541488 CDK10Q15131 360 aa0.66□□□□□ -2.3
PRKDC-210ENST00000541488 DEFB121Q5J5C9 76 aa0.66□□□□□ -2.3
PRKDC-210ENST00000541488 LINC00471Q8N535 108 aa0.66□□□□□ -2.3
PRKDC-210ENST00000541488 ZNF439Q8NDP4 499 aa0.66□□□□□ -2.3
PRKDC-210ENST00000541488 OR5B17Q8NGF7 314 aa0.66□□□□□ -2.3
PRKDC-210ENST00000541488 PFN4Q8NHR9 129 aa0.66□□□□□ -2.3
PRKDC-210ENST00000541488 NIPSNAP1Q9BPW8 284 aa0.66□□□□□ -2.3
PRKDC-210ENST00000541488 MIXL1Q9H2W2 232 aa0.66□□□□□ -2.3
PRKDC-210ENST00000541488 TRABDQ9H4I3 376 aa0.66□□□□□ -2.3
PRKDC-210ENST00000541488 PARVGQ9HBI0 331 aa0.66□□□□□ -2.3
PRKDC-210ENST00000541488 MRPL40Q9NQ50 206 aaKnown RBP0.66□□□□□ -2.3
PRKDC-210ENST00000541488 GINS2Q9Y248 185 aa0.66□□□□□ -2.3
PRKDC-210ENST00000541488 SNURFQ9Y675 71 aa0.66□□□□□ -2.3
PRKDC-210ENST00000541488 TMEM56-RWDD3S4R434 201 aa0.66□□□□□ -2.3
PRKDC-210ENST00000541488 U3KQA8 63 aa0.66□□□□□ -2.3
PRKDC-210ENST00000541488 UNC13CQ8NB66 2214 aa0.66□□□□□ -2.3
PRKDC-210ENST00000541488 LPAP08519 4548 aa0.66□□□□□ -2.3
PRKDC-210ENST00000541488 MUC12Q9UKN1 5478 aa0.65□□□□□ -2.3
PRKDC-210ENST00000541488 FREM3P0C091 2139 aa0.65□□□□□ -2.3
PRKDC-210ENST00000541488 DNAH5Q8TE73 4624 aa0.65□□□□□ -2.31
PRKDC-210ENST00000541488 TRAV14DV4A0A0A6YYC5 116 aa0.65□□□□□ -2.31
PRKDC-210ENST00000541488 PQLC2LA1A4F0 135 aa0.65□□□□□ -2.31
PRKDC-210ENST00000541488 TCL1BO95988 128 aa0.65□□□□□ -2.31
PRKDC-210ENST00000541488 CEBPGP53567 150 aa0.65□□□□□ -2.31
PRKDC-210ENST00000541488 RUNX1Q01196 453 aa0.65□□□□□ -2.31
PRKDC-210ENST00000541488 ZNF846Q147U1 533 aa0.65□□□□□ -2.31
PRKDC-210ENST00000541488 SURF2Q15527 256 aaPredicted RBP0.65□□□□□ -2.31
PRKDC-210ENST00000541488 ACOT6Q3I5F7 207 aaPredicted RBP0.65□□□□□ -2.31
PRKDC-210ENST00000541488 SPANXN5Q5MJ07 72 aa0.65□□□□□ -2.31
PRKDC-210ENST00000541488 C8orf74Q6P047 294 aa0.65□□□□□ -2.31
PRKDC-210ENST00000541488 LCN15Q6UWW0 184 aa0.65□□□□□ -2.31
PRKDC-210ENST00000541488 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP0.65□□□□□ -2.31
PRKDC-210ENST00000541488 MIR17HGQ75NE6 70 aa0.65□□□□□ -2.31
PRKDC-210ENST00000541488 ZNF565Q8N9K5 539 aa0.65□□□□□ -2.31
PRKDC-210ENST00000541488 OR2T4Q8NH00 348 aa0.65□□□□□ -2.31
PRKDC-210ENST00000541488 OR4C6Q8NH72 309 aa0.65□□□□□ -2.31
PRKDC-210ENST00000541488 TOMM6Q96B49 74 aa0.65□□□□□ -2.31
PRKDC-210ENST00000541488 DCUN1D1Q96GG9 259 aa0.65□□□□□ -2.31
PRKDC-210ENST00000541488 REG4Q9BYZ8 158 aa0.65□□□□□ -2.31
PRKDC-210ENST00000541488 C20orf27Q9GZN8 174 aa0.65□□□□□ -2.31
PRKDC-210ENST00000541488 FBXL12Q9NXK8 326 aa0.65□□□□□ -2.31
PRKDC-210ENST00000541488 VPS29Q9UBQ0 182 aa0.65□□□□□ -2.31
PRKDC-210ENST00000541488 VPS13BQ7Z7G8 4022 aa0.65□□□□□ -2.31
PRKDC-210ENST00000541488 ANKRD36A6QL64 1941 aa0.65□□□□□ -2.31
PRKDC-210ENST00000541488 PLIN4Q96Q06 1357 aa0.65□□□□□ -2.31
PRKDC-210ENST00000541488 ROS1P08922 2347 aa0.65□□□□□ -2.31
PRKDC-210ENST00000541488 USH2AO75445 5202 aa0.65□□□□□ -2.31
PRKDC-210ENST00000541488 LRP1BQ9NZR2 4599 aa0.65□□□□□ -2.31
PRKDC-210ENST00000541488 CCDC171Q6TFL3 1326 aa0.64□□□□□ -2.31
PRKDC-210ENST00000541488 TCHHQ07283 1943 aa0.64□□□□□ -2.31
PRKDC-210ENST00000541488 DPRXA6NFQ7 191 aa0.64□□□□□ -2.31
PRKDC-210ENST00000541488 TMEM212A6NML5 194 aa0.64□□□□□ -2.31
PRKDC-210ENST00000541488 STATHP02808 62 aa0.64□□□□□ -2.31
PRKDC-210ENST00000541488 RNASE3P12724 160 aaKnown RBP0.64□□□□□ -2.31
PRKDC-210ENST00000541488 RPL5P46777 297 aaKnown RBP0.64□□□□□ -2.31
PRKDC-210ENST00000541488 OMPP47874 163 aa0.64□□□□□ -2.31
PRKDC-210ENST00000541488 TFF3Q07654 80 aa0.64□□□□□ -2.31
PRKDC-210ENST00000541488 KISS1Q15726 138 aa0.64□□□□□ -2.31
PRKDC-210ENST00000541488 RGS21Q2M5E4 152 aa0.64□□□□□ -2.31
PRKDC-210ENST00000541488 Q5VSD8 79 aa0.64□□□□□ -2.31
PRKDC-210ENST00000541488 TEX36Q5VZQ5 186 aa0.64□□□□□ -2.31
PRKDC-210ENST00000541488 SPOPLQ6IQ16 392 aa0.64□□□□□ -2.31
PRKDC-210ENST00000541488 DPPA3Q6W0C5 159 aa0.64□□□□□ -2.31
PRKDC-210ENST00000541488 PHF13Q86YI8 300 aaPredicted RBP0.64□□□□□ -2.31
PRKDC-210ENST00000541488 FDCSPQ8NFU4 85 aa0.64□□□□□ -2.31
PRKDC-210ENST00000541488 TERB2Q8NHR7 220 aa0.64□□□□□ -2.31
PRKDC-210ENST00000541488 PPTC7Q8NI37 304 aa0.64□□□□□ -2.31
PRKDC-210ENST00000541488 KLK6Q92876 244 aa0.64□□□□□ -2.31
PRKDC-210ENST00000541488 TSPAN32Q96QS1 320 aa0.64□□□□□ -2.31
PRKDC-210ENST00000541488 CCL19Q99731 98 aa0.64□□□□□ -2.31
PRKDC-210ENST00000541488 MRPL57Q9BQC6 102 aaKnown RBP0.64□□□□□ -2.31
PRKDC-210ENST00000541488 GINS4Q9BRT9 223 aa0.64□□□□□ -2.31
PRKDC-210ENST00000541488 CMTM6Q9NX76 183 aa0.64□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms