RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 KLLNB2CW77 178 aa10.44□□□□□ -0.74
USP28-204ENST00000537642 SLC25A5P05141 298 aaKnown RBP10.44□□□□□ -0.74
USP28-204ENST00000537642 GIPP09681 153 aaPredicted RBP10.44□□□□□ -0.74
USP28-204ENST00000537642 P0DMU3 169 aa10.44□□□□□ -0.74
USP28-204ENST00000537642 FAM231AP0DMU4 169 aa10.44□□□□□ -0.74
USP28-204ENST00000537642 FAM231CP0DMU5 169 aa10.44□□□□□ -0.74
USP28-204ENST00000537642 M6PRP20645 277 aa10.44□□□□□ -0.74
USP28-204ENST00000537642 TAS2R45P59539 299 aa10.44□□□□□ -0.74
USP28-204ENST00000537642 RANP62826 216 aaKnown RBP10.44□□□□□ -0.74
USP28-204ENST00000537642 UBE2L3P68036 154 aaKnown RBP10.44□□□□□ -0.74
USP28-204ENST00000537642 KHDC3LQ587J8 217 aa10.44□□□□□ -0.74
USP28-204ENST00000537642 TMEM88Q6PEY1 159 aa10.44□□□□□ -0.74
USP28-204ENST00000537642 NOP10Q9NPE3 64 aaKnown RBP10.44□□□□□ -0.74
USP28-204ENST00000537642 DNAH2Q9P225 4427 aa10.44□□□□□ -0.74
USP28-204ENST00000537642 CRISP2P16562 243 aa10.43□□□□□ -0.74
USP28-204ENST00000537642 RAB2AP61019 212 aa10.43□□□□□ -0.74
USP28-204ENST00000537642 CD300CQ08708 224 aa10.43□□□□□ -0.74
USP28-204ENST00000537642 BTN1A1Q13410 526 aa10.43□□□□□ -0.74
USP28-204ENST00000537642 ACOT6Q3I5F7 207 aaPredicted RBP10.43□□□□□ -0.74
USP28-204ENST00000537642 CCDC28AQ8IWP9 274 aa10.43□□□□□ -0.74
USP28-204ENST00000537642 LYPD1Q8N2G4 141 aa10.43□□□□□ -0.74
USP28-204ENST00000537642 POM121L12Q8N7R1 296 aa10.43□□□□□ -0.74
USP28-204ENST00000537642 PYGO2Q9BRQ0 406 aa10.43□□□□□ -0.74
USP28-204ENST00000537642 Q9H3A6 140 aa10.43□□□□□ -0.74
USP28-204ENST00000537642 CBY3A6NI87 242 aa10.42□□□□□ -0.74
USP28-204ENST00000537642 ZNF324O75467 553 aaPredicted RBP10.42□□□□□ -0.74
USP28-204ENST00000537642 ZNF266Q14584 549 aa10.42□□□□□ -0.74
USP28-204ENST00000537642 RGS21Q2M5E4 152 aa10.42□□□□□ -0.74
USP28-204ENST00000537642 TMEM78Q5T7P6 136 aa10.42□□□□□ -0.74
USP28-204ENST00000537642 PRR9Q5T870 116 aa10.42□□□□□ -0.74
USP28-204ENST00000537642 ZFAND2AQ8N6M9 145 aa10.42□□□□□ -0.74
USP28-204ENST00000537642 ASB13Q8WXK3 278 aa10.42□□□□□ -0.74
USP28-204ENST00000537642 ZNF492Q9P255 531 aa10.42□□□□□ -0.74
USP28-204ENST00000537642 DNAH17Q9UFH2 4485 aa10.41□□□□□ -0.74
USP28-204ENST00000537642 A0A1W2PPV4 95 aa10.41□□□□□ -0.74
USP28-204ENST00000537642 F5H768 121 aa10.41□□□□□ -0.74
USP28-204ENST00000537642 ATP5G1P05496 136 aa10.41□□□□□ -0.74
USP28-204ENST00000537642 RNASE4P34096 147 aaKnown RBP10.41□□□□□ -0.74
USP28-204ENST00000537642 ATP5G3P48201 142 aa10.41□□□□□ -0.74
USP28-204ENST00000537642 LINC00612Q8N6U2 182 aa10.41□□□□□ -0.74
USP28-204ENST00000537642 HSD17B11Q8NBQ5 300 aa10.41□□□□□ -0.74
USP28-204ENST00000537642 NACAE9PAV3 2078 aa10.4□□□□□ -0.74
USP28-204ENST00000537642 FAT2Q9NYQ8 4349 aa10.4□□□□□ -0.74
USP28-204ENST00000537642 RBAKDNA6NC62 111 aa10.4□□□□□ -0.74
USP28-204ENST00000537642 RNF222A6NCQ9 220 aa10.4□□□□□ -0.74
USP28-204ENST00000537642 GPX1P07203 203 aa10.4□□□□□ -0.74
USP28-204ENST00000537642 NMBP08949 121 aa10.4□□□□□ -0.74
USP28-204ENST00000537642 ATP6V0CP27449 155 aa10.4□□□□□ -0.74
USP28-204ENST00000537642 CSN1S1P47710 185 aa10.4□□□□□ -0.74
USP28-204ENST00000537642 ZNF138P52744 262 aa10.4□□□□□ -0.74
USP28-204ENST00000537642 PQLC2Q6ZP29 291 aa10.4□□□□□ -0.74
USP28-204ENST00000537642 OR10G4Q8NGN3 311 aa10.4□□□□□ -0.74
USP28-204ENST00000537642 OR10G9Q8NGN4 311 aa10.4□□□□□ -0.74
USP28-204ENST00000537642 OR10G7Q8NGN6 311 aa10.4□□□□□ -0.74
USP28-204ENST00000537642 OR2G3Q8NGZ4 309 aa10.4□□□□□ -0.74
USP28-204ENST00000537642 Q8TAT8 98 aa10.4□□□□□ -0.74
USP28-204ENST00000537642 LINC00467Q9BRT7 94 aa10.4□□□□□ -0.74
USP28-204ENST00000537642 SNURFLB1AK76 121 aa10.39□□□□□ -0.75
USP28-204ENST00000537642 DIRC3C9JPN6 131 aa10.39□□□□□ -0.75
USP28-204ENST00000537642 HMGB3O15347 200 aaKnown RBP10.39□□□□□ -0.75
USP28-204ENST00000537642 Q6ZQT7 251 aa10.39□□□□□ -0.75
USP28-204ENST00000537642 C15orf53Q8NAA6 179 aa10.39□□□□□ -0.75
USP28-204ENST00000537642 PSMG3Q9BT73 122 aaPredicted RBP10.39□□□□□ -0.75
USP28-204ENST00000537642 OTORQ9NRC9 128 aa10.39□□□□□ -0.75
USP28-204ENST00000537642 FXYD6-FXYD2A0A087WZ82 144 aa10.38□□□□□ -0.75
USP28-204ENST00000537642 TRBV7-9A0A0J9YWB2 115 aa10.38□□□□□ -0.75
USP28-204ENST00000537642 GAGE12BA1L429 117 aa10.38□□□□□ -0.75
USP28-204ENST00000537642 PGPA6NDG6 321 aa10.38□□□□□ -0.75
USP28-204ENST00000537642 G3V3Q6 166 aa10.38□□□□□ -0.75
USP28-204ENST00000537642 GAGE7O76087 117 aa10.38□□□□□ -0.75
USP28-204ENST00000537642 GAGE12FP0CL80 117 aa10.38□□□□□ -0.75
USP28-204ENST00000537642 GAGE12GP0CL81 117 aa10.38□□□□□ -0.75
USP28-204ENST00000537642 GAGE12IP0CL82 117 aa10.38□□□□□ -0.75
USP28-204ENST00000537642 CDC34P49427 236 aaPredicted RBP10.38□□□□□ -0.75
USP28-204ENST00000537642 DAZ2Q13117 558 aaKnown RBP10.38□□□□□ -0.75
USP28-204ENST00000537642 ANXA2RQ3ZCQ2 193 aa10.38□□□□□ -0.75
USP28-204ENST00000537642 UBE2DNLQ8IWF7 75 aa10.38□□□□□ -0.75
USP28-204ENST00000537642 EIF4E3Q8N5X7 224 aaKnown RBP10.38□□□□□ -0.75
USP28-204ENST00000537642 C11orf72Q8NBR9 251 aa10.38□□□□□ -0.75
USP28-204ENST00000537642 INO80EQ8NBZ0 244 aaPredicted RBP10.38□□□□□ -0.75
USP28-204ENST00000537642 OR2T35Q8NGX2 323 aa10.38□□□□□ -0.75
USP28-204ENST00000537642 RXFP4Q8TDU9 374 aa10.38□□□□□ -0.75
USP28-204ENST00000537642 HYLS1Q96M11 299 aa10.38□□□□□ -0.75
USP28-204ENST00000537642 SH3BGRL3Q9H299 93 aa10.38□□□□□ -0.75
USP28-204ENST00000537642 GSN-AS1Q9NRJ2 163 aa10.38□□□□□ -0.75
USP28-204ENST00000537642 TNFSF18Q9UNG2 199 aa10.38□□□□□ -0.75
USP28-204ENST00000537642 HECTD4Q9Y4D8 3996 aa10.38□□□□□ -0.75
USP28-204ENST00000537642 STAG3L2P0CL84 134 aa10.37□□□□□ -0.75
USP28-204ENST00000537642 STAG3L3P0CL85 134 aa10.37□□□□□ -0.75
USP28-204ENST00000537642 ARL14EPLP0DKL9 152 aa10.37□□□□□ -0.75
USP28-204ENST00000537642 RPL7L1Q6DKI1 246 aaKnown RBP10.37□□□□□ -0.75
USP28-204ENST00000537642 ZNF680Q8NEM1 530 aa10.37□□□□□ -0.75
USP28-204ENST00000537642 SERF2P84101 59 aa10.36□□□□□ -0.75
USP28-204ENST00000537642 RNF212Q495C1 297 aa10.36□□□□□ -0.75
USP28-204ENST00000537642 Q6ZTI0 123 aa10.36□□□□□ -0.75
USP28-204ENST00000537642 RAB24Q969Q5 203 aa10.36□□□□□ -0.75
USP28-204ENST00000537642 TP53TG3Q9ULZ0 132 aa10.36□□□□□ -0.75
USP28-204ENST00000537642 RPH3ALQ9UNE2 315 aa10.36□□□□□ -0.75
USP28-204ENST00000537642 IGHV1OR15-1A0A075B7D0 117 aa10.35□□□□□ -0.75
USP28-204ENST00000537642 M0R2N4 97 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms