RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 TM2D3Q9BRN9 247 aa21.65■■□□□ 1.06
LIMCH1-211ENST00000509638 AGPAT4-IT1Q9H0P7 198 aa21.65■■□□□ 1.06
LIMCH1-211ENST00000509638 XCL2Q9UBD3 114 aa21.65■■□□□ 1.06
LIMCH1-211ENST00000509638 EPDR1Q9UM22 224 aa21.65■■□□□ 1.06
LIMCH1-211ENST00000509638 CT45A10P0DMU9 189 aa21.65■■□□□ 1.06
LIMCH1-211ENST00000509638 Q6ZWC4 215 aa21.64■■□□□ 1.05
LIMCH1-211ENST00000509638 Q8TAT8 98 aa21.64■■□□□ 1.05
LIMCH1-211ENST00000509638 ATG101Q9BSB4 218 aa21.64■■□□□ 1.05
LIMCH1-211ENST00000509638 C1QTNF4Q9BXJ3 329 aa21.64■■□□□ 1.05
LIMCH1-211ENST00000509638 CCDC28AQ8IWP9 274 aa21.63■■□□□ 1.05
LIMCH1-211ENST00000509638 PCNPQ8WW12 178 aaKnown RBP21.63■■□□□ 1.05
LIMCH1-211ENST00000509638 LINC00477Q96M19 166 aa21.63■■□□□ 1.05
LIMCH1-211ENST00000509638 SPATA25Q9BR10 227 aa21.63■■□□□ 1.05
LIMCH1-211ENST00000509638 TRAV8-1A0A0A6YYK1 113 aa21.62■■□□□ 1.05
LIMCH1-211ENST00000509638 SERTM2A0A1B0GWG4 89 aa21.62■■□□□ 1.05
LIMCH1-211ENST00000509638 IFNA1P01562 189 aa21.62■■□□□ 1.05
LIMCH1-211ENST00000509638 CYB561D1Q8N8Q1 229 aa21.62■■□□□ 1.05
LIMCH1-211ENST00000509638 LYPD6BQ8NI32 183 aa21.62■■□□□ 1.05
LIMCH1-211ENST00000509638 ODF3Q96PU9 254 aa21.62■■□□□ 1.05
LIMCH1-211ENST00000509638 C11orf94C9JXX5 98 aa21.61■■□□□ 1.05
LIMCH1-211ENST00000509638 PEX7O00628 323 aa21.61■■□□□ 1.05
LIMCH1-211ENST00000509638 ZNF138P52744 262 aa21.61■■□□□ 1.05
LIMCH1-211ENST00000509638 RCHY1Q96PM5 261 aa21.61■■□□□ 1.05
LIMCH1-211ENST00000509638 ZMAT4Q9H898 229 aa21.61■■□□□ 1.05
LIMCH1-211ENST00000509638 K7EQM0 130 aa21.6■■□□□ 1.05
LIMCH1-211ENST00000509638 BCL2P10415 239 aa21.6■■□□□ 1.05
LIMCH1-211ENST00000509638 CDKN1BP46527 198 aa21.6■■□□□ 1.05
LIMCH1-211ENST00000509638 TCEAL7Q9BRU2 100 aa21.6■■□□□ 1.05
LIMCH1-211ENST00000509638 ZNF492Q9P255 531 aa21.6■■□□□ 1.05
LIMCH1-211ENST00000509638 HUWE1Q7Z6Z7 4374 aaKnown RBP21.59■■□□□ 1.05
LIMCH1-211ENST00000509638 TRAV12-2A0A075B6T6 113 aa21.59■■□□□ 1.05
LIMCH1-211ENST00000509638 AMBPP02760 352 aa21.59■■□□□ 1.05
LIMCH1-211ENST00000509638 PMS2P11Q13670 270 aa21.59■■□□□ 1.05
LIMCH1-211ENST00000509638 CSNK1G2-AS1Q8NCQ2 148 aa21.59■■□□□ 1.05
LIMCH1-211ENST00000509638 HIST1H2BAQ96A08 127 aa21.59■■□□□ 1.05
LIMCH1-211ENST00000509638 NHLRC4P0CG21 123 aaPredicted RBP21.58■■□□□ 1.05
LIMCH1-211ENST00000509638 TSPOP30536 169 aa21.58■■□□□ 1.05
LIMCH1-211ENST00000509638 LEPP41159 167 aa21.58■■□□□ 1.05
LIMCH1-211ENST00000509638 RNF183Q96D59 192 aa21.58■■□□□ 1.05
LIMCH1-211ENST00000509638 FAM19A4Q96LR4 140 aa21.58■■□□□ 1.05
LIMCH1-211ENST00000509638 SGK494Q96LW2 274 aa21.58■■□□□ 1.05
LIMCH1-211ENST00000509638 STAB2Q8WWQ8 2551 aa21.58■■□□□ 1.05
LIMCH1-211ENST00000509638 J3KRW8 73 aa21.57■■□□□ 1.04
LIMCH1-211ENST00000509638 CRXO43186 299 aaPredicted RBP21.57■■□□□ 1.04
LIMCH1-211ENST00000509638 INSP01308 110 aa21.57■■□□□ 1.04
LIMCH1-211ENST00000509638 OVOL2Q9BRP0 275 aa21.57■■□□□ 1.04
LIMCH1-211ENST00000509638 TP53TG1Q9Y2A0 90 aa21.57■■□□□ 1.04
LIMCH1-211ENST00000509638 SPRY2O43597 315 aa21.57■■□□□ 1.04
LIMCH1-211ENST00000509638 NMBP08949 121 aa21.57■■□□□ 1.04
LIMCH1-211ENST00000509638 KIR3DS1Q14943 382 aa21.57■■□□□ 1.04
LIMCH1-211ENST00000509638 TMEM75Q8N9X5 138 aa21.57■■□□□ 1.04
LIMCH1-211ENST00000509638 IGF2BP2-AS1Q96M15 143 aa21.57■■□□□ 1.04
LIMCH1-211ENST00000509638 SCO2A0A1W2PP80 73 aa21.56■■□□□ 1.04
LIMCH1-211ENST00000509638 MEF2BQ02080 365 aaPredicted RBP21.56■■□□□ 1.04
LIMCH1-211ENST00000509638 LINC00479Q96M42 142 aa21.56■■□□□ 1.04
LIMCH1-211ENST00000509638 F6UZH7 168 aa21.55■■□□□ 1.04
LIMCH1-211ENST00000509638 TRAV34A0A0B4J273 112 aa21.54■■□□□ 1.04
LIMCH1-211ENST00000509638 IGLV2-11P01706 119 aa21.54■■□□□ 1.04
LIMCH1-211ENST00000509638 CRISP2P16562 243 aa21.54■■□□□ 1.04
LIMCH1-211ENST00000509638 IFITM2Q01629 132 aa21.54■■□□□ 1.04
LIMCH1-211ENST00000509638 GFI1BQ5VTD9 330 aa21.54■■□□□ 1.04
LIMCH1-211ENST00000509638 TXNDC17Q9BRA2 123 aa21.54■■□□□ 1.04
LIMCH1-211ENST00000509638 VAX2Q9UIW0 290 aa21.54■■□□□ 1.04
LIMCH1-211ENST00000509638 LOC102723971A0A1B0GUV8 181 aa21.53■■□□□ 1.04
LIMCH1-211ENST00000509638 TAGLN2P37802 199 aaKnown RBP21.53■■□□□ 1.04
LIMCH1-211ENST00000509638 FLI1Q01543 452 aaPredicted RBP21.53■■□□□ 1.04
LIMCH1-211ENST00000509638 ZFAND2AQ8N6M9 145 aa21.53■■□□□ 1.04
LIMCH1-211ENST00000509638 TRBV7-9A0A0J9YWB2 115 aa21.53■■□□□ 1.04
LIMCH1-211ENST00000509638 KLLNB2CW77 178 aa21.53■■□□□ 1.04
LIMCH1-211ENST00000509638 AKR1C3P42330 323 aa21.53■■□□□ 1.04
LIMCH1-211ENST00000509638 ZNF767PQ75MW2 155 aa21.53■■□□□ 1.04
LIMCH1-211ENST00000509638 PSG8Q9UQ74 426 aa21.53■■□□□ 1.04
LIMCH1-211ENST00000509638 LENEPQ9Y5L5 61 aa21.53■■□□□ 1.04
LIMCH1-211ENST00000509638 PRR9Q5T870 116 aa21.52■■□□□ 1.04
LIMCH1-211ENST00000509638 PRNTQ86SH4 94 aa21.52■■□□□ 1.04
LIMCH1-211ENST00000509638 IGHV3OR16-12A0A075B7B8 117 aa21.51■■□□□ 1.03
LIMCH1-211ENST00000509638 FBLL1A6NHQ2 334 aaKnown RBP21.51■■□□□ 1.03
LIMCH1-211ENST00000509638 RBMY1A1P0DJD3 496 aaKnown RBP21.51■■□□□ 1.03
LIMCH1-211ENST00000509638 RBMY1CP0DJD4 496 aa21.51■■□□□ 1.03
LIMCH1-211ENST00000509638 RBMY1FQ15415 496 aaKnown RBP21.51■■□□□ 1.03
LIMCH1-211ENST00000509638 Q86TA4 180 aa21.51■■□□□ 1.03
LIMCH1-211ENST00000509638 RARRES2Q99969 163 aa21.51■■□□□ 1.03
LIMCH1-211ENST00000509638 GOLT1BQ9Y3E0 138 aa21.51■■□□□ 1.03
LIMCH1-211ENST00000509638 RBFOX3A6NFN3 312 aa21.5■■□□□ 1.03
LIMCH1-211ENST00000509638 GPX1P07203 203 aa21.5■■□□□ 1.03
LIMCH1-211ENST00000509638 BTN1A1Q13410 526 aa21.5■■□□□ 1.03
LIMCH1-211ENST00000509638 ZNF705AQ6ZN79 300 aaPredicted RBP21.5■■□□□ 1.03
LIMCH1-211ENST00000509638 C1orf158Q8N1D5 194 aa21.5■■□□□ 1.03
LIMCH1-211ENST00000509638 OR11H2Q8NH07 326 aa21.5■■□□□ 1.03
LIMCH1-211ENST00000509638 C2CD4CQ8TF44 421 aa21.5■■□□□ 1.03
LIMCH1-211ENST00000509638 TVP23CQ96ET8 276 aa21.5■■□□□ 1.03
LIMCH1-211ENST00000509638 NDFIP1Q9BT67 221 aa21.5■■□□□ 1.03
LIMCH1-211ENST00000509638 UBE2G1P62253 170 aa21.49■■□□□ 1.03
LIMCH1-211ENST00000509638 TOR2AQ5JU69 321 aa21.49■■□□□ 1.03
LIMCH1-211ENST00000509638 C11orf52Q96A22 123 aa21.49■■□□□ 1.03
LIMCH1-211ENST00000509638 FMC1Q96HJ9 113 aa21.49■■□□□ 1.03
LIMCH1-211ENST00000509638 TMEM208Q9BTX3 173 aa21.49■■□□□ 1.03
LIMCH1-211ENST00000509638 C7orf71A4D174 169 aa21.48■■□□□ 1.03
LIMCH1-211ENST00000509638 PDE6DO43924 150 aa21.48■■□□□ 1.03
LIMCH1-211ENST00000509638 TREM1Q9NP99 234 aa21.48■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms