RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 MOGAT3Q86VF5 341 aa5.72□□□□□ -1.49
LIMCH1-207ENST00000508466 CNEP1R1Q8N9A8 125 aa5.72□□□□□ -1.49
LIMCH1-207ENST00000508466 VPREB3Q9UKI3 123 aa5.72□□□□□ -1.49
LIMCH1-207ENST00000508466 MALRD1Q5VYJ5 2156 aa5.72□□□□□ -1.49
LIMCH1-207ENST00000508466 EP300Q09472 2414 aaPredicted RBP5.72□□□□□ -1.49
LIMCH1-207ENST00000508466 TEX49A0A1B0GTD5 131 aa5.72□□□□□ -1.49
LIMCH1-207ENST00000508466 UPK2O00526 184 aa5.72□□□□□ -1.49
LIMCH1-207ENST00000508466 IGLV2-11P01706 119 aa5.72□□□□□ -1.49
LIMCH1-207ENST00000508466 IGHV3-23P01764 117 aa5.72□□□□□ -1.49
LIMCH1-207ENST00000508466 PRCDQ00LT1 54 aa5.72□□□□□ -1.49
LIMCH1-207ENST00000508466 C2orf83Q53S99 150 aa5.72□□□□□ -1.49
LIMCH1-207ENST00000508466 FAM104BQ5XKR9 115 aa5.72□□□□□ -1.49
LIMCH1-207ENST00000508466 CCL13Q99616 98 aa5.72□□□□□ -1.49
LIMCH1-207ENST00000508466 MRPL20Q9BYC9 149 aaKnown RBP5.72□□□□□ -1.49
LIMCH1-207ENST00000508466 TMEM133Q9H2Q1 129 aa5.72□□□□□ -1.49
LIMCH1-207ENST00000508466 ONECUT1Q9UBC0 465 aa5.72□□□□□ -1.49
LIMCH1-207ENST00000508466 IGHV3-64A0A075B6Q5 118 aa5.71□□□□□ -1.49
LIMCH1-207ENST00000508466 IGHV1OR15-9A0A0B4J2B8 117 aa5.71□□□□□ -1.49
LIMCH1-207ENST00000508466 IGHV5-10-1A0A0J9YXX1 117 aa5.71□□□□□ -1.49
LIMCH1-207ENST00000508466 FSTL3O95633 263 aa5.71□□□□□ -1.49
LIMCH1-207ENST00000508466 PF4V1P10720 104 aa5.71□□□□□ -1.49
LIMCH1-207ENST00000508466 CNTFRP26992 372 aa5.71□□□□□ -1.49
LIMCH1-207ENST00000508466 ERHP84090 104 aaKnown RBP5.71□□□□□ -1.49
LIMCH1-207ENST00000508466 FAM216BQ8N7L0 139 aa5.71□□□□□ -1.49
LIMCH1-207ENST00000508466 AAMDCQ9H7C9 122 aa5.71□□□□□ -1.49
LIMCH1-207ENST00000508466 ZNF492Q9P255 531 aa5.71□□□□□ -1.49
LIMCH1-207ENST00000508466 FOXA2Q9Y261 457 aaPredicted RBP5.71□□□□□ -1.49
LIMCH1-207ENST00000508466 A0A087WX48 190 aa5.71□□□□□ -1.5
LIMCH1-207ENST00000508466 DPM2O94777 84 aa5.71□□□□□ -1.5
LIMCH1-207ENST00000508466 ZNF688P0C7X2 276 aa5.71□□□□□ -1.5
LIMCH1-207ENST00000508466 CD40P25942 277 aa5.71□□□□□ -1.5
LIMCH1-207ENST00000508466 MYCNOSP40205 109 aa5.71□□□□□ -1.5
LIMCH1-207ENST00000508466 MYOZ3Q8TDC0 251 aa5.71□□□□□ -1.5
LIMCH1-207ENST00000508466 TNFRSF18Q9Y5U5 241 aa5.71□□□□□ -1.5
LIMCH1-207ENST00000508466 COL4A2P08572 1712 aa5.71□□□□□ -1.5
LIMCH1-207ENST00000508466 A0A1W2PR77 199 aa5.71□□□□□ -1.5
LIMCH1-207ENST00000508466 LINC00694P0DN24 101 aa5.71□□□□□ -1.5
LIMCH1-207ENST00000508466 CCL3L1P16619 93 aa5.71□□□□□ -1.5
LIMCH1-207ENST00000508466 ZNF80P51504 273 aaPredicted RBP5.71□□□□□ -1.5
LIMCH1-207ENST00000508466 SLC25A48Q6ZT89 311 aaKnown RBP5.71□□□□□ -1.5
LIMCH1-207ENST00000508466 FAM90A1Q86YD7 464 aa5.71□□□□□ -1.5
LIMCH1-207ENST00000508466 NTN5Q8WTR8 489 aaPredicted RBP5.71□□□□□ -1.5
LIMCH1-207ENST00000508466 DPF1Q92782 380 aa5.71□□□□□ -1.5
LIMCH1-207ENST00000508466 IGLV3-12A0A075B6K2 115 aa5.7□□□□□ -1.5
LIMCH1-207ENST00000508466 TRGV8A0A0C4DH27 118 aa5.7□□□□□ -1.5
LIMCH1-207ENST00000508466 OOSP1A8MZH6 123 aa5.7□□□□□ -1.5
LIMCH1-207ENST00000508466 ELANEP08246 267 aa5.7□□□□□ -1.5
LIMCH1-207ENST00000508466 IFITM1P13164 125 aa5.7□□□□□ -1.5
LIMCH1-207ENST00000508466 SLC25A16P16260 332 aa5.7□□□□□ -1.5
LIMCH1-207ENST00000508466 PLGLB1Q02325 96 aa5.7□□□□□ -1.5
LIMCH1-207ENST00000508466 Q8IYB0 196 aa5.7□□□□□ -1.5
LIMCH1-207ENST00000508466 IMMP1LQ96LU5 166 aa5.7□□□□□ -1.5
LIMCH1-207ENST00000508466 PTPRQQ9UMZ3 2332 aa5.7□□□□□ -1.5
LIMCH1-207ENST00000508466 IGHV3-66A0A0C4DH42 116 aa5.7□□□□□ -1.5
LIMCH1-207ENST00000508466 CRYGCP07315 174 aa5.7□□□□□ -1.5
LIMCH1-207ENST00000508466 EGR2P11161 476 aaPredicted RBP5.7□□□□□ -1.5
LIMCH1-207ENST00000508466 RPL7P18124 248 aaKnown RBP5.7□□□□□ -1.5
LIMCH1-207ENST00000508466 PPDPFLQ8WWR9 84 aa5.7□□□□□ -1.5
LIMCH1-207ENST00000508466 FMC1Q96HJ9 113 aa5.7□□□□□ -1.5
LIMCH1-207ENST00000508466 RAB9BQ9NP90 201 aa5.7□□□□□ -1.5
LIMCH1-207ENST00000508466 KLF12Q9Y4X4 402 aa5.7□□□□□ -1.5
LIMCH1-207ENST00000508466 A8MWV9 139 aa5.69□□□□□ -1.5
LIMCH1-207ENST00000508466 TNFRSF6BO95407 300 aa5.69□□□□□ -1.5
LIMCH1-207ENST00000508466 TRGV3P03979 118 aa5.69□□□□□ -1.5
LIMCH1-207ENST00000508466 MEOX1P50221 254 aa5.69□□□□□ -1.5
LIMCH1-207ENST00000508466 NPC2P61916 151 aa5.69□□□□□ -1.5
LIMCH1-207ENST00000508466 C15orf53Q8NAA6 179 aa5.69□□□□□ -1.5
LIMCH1-207ENST00000508466 DUX3Q96PT4 197 aa5.69□□□□□ -1.5
LIMCH1-207ENST00000508466 MRPL32Q9BYC8 188 aaKnown RBP5.69□□□□□ -1.5
LIMCH1-207ENST00000508466 NCBP2LA6PVI3 153 aaKnown RBP5.69□□□□□ -1.5
LIMCH1-207ENST00000508466 ZNF815PA8K554 130 aa5.69□□□□□ -1.5
LIMCH1-207ENST00000508466 SH2D1AO60880 128 aa5.69□□□□□ -1.5
LIMCH1-207ENST00000508466 SRSF1Q07955 248 aaKnown RBP eCLIP5.69□□□□□ -1.5
LIMCH1-207ENST00000508466 Q6ZS46 218 aa5.69□□□□□ -1.5
LIMCH1-207ENST00000508466 PPP1R27Q86WC6 154 aa5.69□□□□□ -1.5
LIMCH1-207ENST00000508466 WDR31Q8NA23 367 aa5.69□□□□□ -1.5
LIMCH1-207ENST00000508466 NACAE9PAV3 2078 aa5.69□□□□□ -1.5
LIMCH1-207ENST00000508466 SS18L1O75177 396 aaPredicted RBP5.68□□□□□ -1.5
LIMCH1-207ENST00000508466 GP9P14770 177 aa5.68□□□□□ -1.5
LIMCH1-207ENST00000508466 ERCC8Q13216 396 aa5.68□□□□□ -1.5
LIMCH1-207ENST00000508466 ZNF56Q15929 161 aa5.68□□□□□ -1.5
LIMCH1-207ENST00000508466 MSMPQ1L6U9 139 aa5.68□□□□□ -1.5
LIMCH1-207ENST00000508466 C17orf58Q2M2W7 97 aa5.68□□□□□ -1.5
LIMCH1-207ENST00000508466 TEN1Q86WV5 123 aa5.68□□□□□ -1.5
LIMCH1-207ENST00000508466 OBP2AQ9NY56 170 aa5.68□□□□□ -1.5
LIMCH1-207ENST00000508466 IGHV3-49A0A0A0MS15 119 aa5.68□□□□□ -1.5
LIMCH1-207ENST00000508466 A0A1W2PPI3 338 aa5.68□□□□□ -1.5
LIMCH1-207ENST00000508466 TMEM262E9PQX1 116 aa5.68□□□□□ -1.5
LIMCH1-207ENST00000508466 LGALS1P09382 135 aaKnown RBP5.68□□□□□ -1.5
LIMCH1-207ENST00000508466 MRPS21P82921 87 aaKnown RBP5.68□□□□□ -1.5
LIMCH1-207ENST00000508466 TMEM78Q5T7P6 136 aa5.68□□□□□ -1.5
LIMCH1-207ENST00000508466 MRPL14Q6P1L8 145 aaKnown RBP5.68□□□□□ -1.5
LIMCH1-207ENST00000508466 CEMP1Q6PRD7 247 aaPredicted RBP5.68□□□□□ -1.5
LIMCH1-207ENST00000508466 C17orf82Q86X59 251 aaPredicted RBP5.68□□□□□ -1.5
LIMCH1-207ENST00000508466 PAX8Q06710 450 aa5.68□□□□□ -1.5
LIMCH1-207ENST00000508466 MZT1Q08AG7 82 aa5.68□□□□□ -1.5
LIMCH1-207ENST00000508466 Q1RN00 199 aa5.68□□□□□ -1.5
LIMCH1-207ENST00000508466 Q6ZSV7 163 aa5.68□□□□□ -1.5
LIMCH1-207ENST00000508466 MAP1LC3AQ9H492 121 aa5.68□□□□□ -1.5
LIMCH1-207ENST00000508466 TRBV7-3A0A075B6L6 115 aa5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms