RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 FAM110AQ9BQ89 295 aa14.33□□□□□ -0.12
USP39-218ENST00000493829 SRD5A3Q9H8P0 318 aa14.33□□□□□ -0.12
USP39-218ENST00000493829 ZMAT5Q9UDW3 170 aaKnown RBP14.33□□□□□ -0.12
USP39-218ENST00000493829 TMEM250H0YL14 139 aa14.32□□□□□ -0.12
USP39-218ENST00000493829 H3BMM0 161 aa14.32□□□□□ -0.12
USP39-218ENST00000493829 IGLV2-11P01706 119 aa14.32□□□□□ -0.12
USP39-218ENST00000493829 SFTA3P0C7M3 94 aa14.32□□□□□ -0.12
USP39-218ENST00000493829 RPL35AP18077 110 aaKnown RBP14.32□□□□□ -0.12
USP39-218ENST00000493829 Q86TA4 180 aa14.32□□□□□ -0.12
USP39-218ENST00000493829 TMEM75Q8N9X5 138 aa14.32□□□□□ -0.12
USP39-218ENST00000493829 SLC35B3Q9H1N7 401 aa14.32□□□□□ -0.12
USP39-218ENST00000493829 PARLQ9H300 379 aa14.32□□□□□ -0.12
USP39-218ENST00000493829 AGRNO00468 2067 aa14.31□□□□□ -0.12
USP39-218ENST00000493829 SERTM2A0A1B0GWG4 89 aa14.31□□□□□ -0.12
USP39-218ENST00000493829 RBAKDNA6NC62 111 aa14.31□□□□□ -0.12
USP39-218ENST00000493829 RBMY1BA6NDE4 496 aaKnown RBP14.31□□□□□ -0.12
USP39-218ENST00000493829 RBMY1EA6NEQ0 496 aaKnown RBP14.31□□□□□ -0.12
USP39-218ENST00000493829 J3KRW8 73 aa14.31□□□□□ -0.12
USP39-218ENST00000493829 RBMY1DP0C7P1 496 aaKnown RBP14.31□□□□□ -0.12
USP39-218ENST00000493829 FXYD7P58549 80 aa14.31□□□□□ -0.12
USP39-218ENST00000493829 FLI1Q01543 452 aaPredicted RBP14.31□□□□□ -0.12
USP39-218ENST00000493829 ARL6IP6Q8N6S5 226 aa14.31□□□□□ -0.12
USP39-218ENST00000493829 NHLRC2Q8NBF2 726 aa14.31□□□□□ -0.12
USP39-218ENST00000493829 FMC1Q96HJ9 113 aa14.31□□□□□ -0.12
USP39-218ENST00000493829 PPP1R14DQ9NXH3 145 aa14.31□□□□□ -0.12
USP39-218ENST00000493829 PSG8Q9UQ74 426 aa14.31□□□□□ -0.12
USP39-218ENST00000493829 DUSP14O95147 198 aaKnown RBP14.3□□□□□ -0.12
USP39-218ENST00000493829 CT45A10P0DMU9 189 aa14.3□□□□□ -0.12
USP39-218ENST00000493829 C9orf47Q6ZRZ4 202 aa14.3□□□□□ -0.12
USP39-218ENST00000493829 ZNF138P52744 262 aa14.3□□□□□ -0.12
USP39-218ENST00000493829 TMEM183BQ1AE95 376 aa14.3□□□□□ -0.12
USP39-218ENST00000493829 CENPWQ5EE01 88 aa14.3□□□□□ -0.12
USP39-218ENST00000493829 UQCC3Q6UW78 93 aa14.3□□□□□ -0.12
USP39-218ENST00000493829 NOTCH1P46531 2555 aa14.29□□□□□ -0.12
USP39-218ENST00000493829 PGPEP1LA6NFU8 196 aa14.29□□□□□ -0.12
USP39-218ENST00000493829 TRPT1Q86TN4 253 aaKnown RBP14.29□□□□□ -0.12
USP39-218ENST00000493829 SMIM7Q9BQ49 75 aa14.29□□□□□ -0.12
USP39-218ENST00000493829 SMDT1Q9H4I9 107 aa14.29□□□□□ -0.12
USP39-218ENST00000493829 M0R2Z0 102 aa14.28□□□□□ -0.12
USP39-218ENST00000493829 KPRPQ5T749 579 aaPredicted RBP14.28□□□□□ -0.12
USP39-218ENST00000493829 EIF4E3Q8N5X7 224 aaKnown RBP14.28□□□□□ -0.12
USP39-218ENST00000493829 C8orf49Q96NF6 230 aa14.28□□□□□ -0.12
USP39-218ENST00000493829 TUBA4BQ9H853 241 aa14.28□□□□□ -0.12
USP39-218ENST00000493829 AURKAIP1Q9NWT8 199 aaPredicted RBP14.28□□□□□ -0.12
USP39-218ENST00000493829 ZNF492Q9P255 531 aa14.28□□□□□ -0.12
USP39-218ENST00000493829 KLF12Q9Y4X4 402 aa14.28□□□□□ -0.12
USP39-218ENST00000493829 TRBV20OR9-2A0A075B6H5 130 aa14.27□□□□□ -0.12
USP39-218ENST00000493829 ZNF727A8MUV8 499 aa14.27□□□□□ -0.12
USP39-218ENST00000493829 IGHV4-30-4P0DP06 118 aa14.27□□□□□ -0.12
USP39-218ENST00000493829 SPINK13Q1W4C9 94 aa14.27□□□□□ -0.12
USP39-218ENST00000493829 TVP23CQ96ET8 276 aa14.27□□□□□ -0.12
USP39-218ENST00000493829 IGF2BP2-AS1Q96M15 143 aa14.27□□□□□ -0.12
USP39-218ENST00000493829 LINC00477Q96M19 166 aa14.27□□□□□ -0.12
USP39-218ENST00000493829 NBEAL1Q6ZS30 2694 aa14.27□□□□□ -0.13
USP39-218ENST00000493829 GNG4P50150 75 aa14.26□□□□□ -0.13
USP39-218ENST00000493829 SOHLH1Q5JUK2 328 aa14.26□□□□□ -0.13
USP39-218ENST00000493829 LTAP01374 205 aa14.26□□□□□ -0.13
USP39-218ENST00000493829 KIR3DS1Q14943 382 aa14.26□□□□□ -0.13
USP39-218ENST00000493829 NDUFA5Q16718 116 aa14.26□□□□□ -0.13
USP39-218ENST00000493829 AMTNQ6UX39 209 aa14.26□□□□□ -0.13
USP39-218ENST00000493829 BAGE2Q86Y30 109 aa14.26□□□□□ -0.13
USP39-218ENST00000493829 NDFIP1Q9BT67 221 aa14.26□□□□□ -0.13
USP39-218ENST00000493829 TRAV12-2A0A075B6T6 113 aa14.25□□□□□ -0.13
USP39-218ENST00000493829 S100A9P06702 114 aaKnown RBP14.25□□□□□ -0.13
USP39-218ENST00000493829 TMEM218A2RU14 115 aa14.24□□□□□ -0.13
USP39-218ENST00000493829 NDUFS6O75380 124 aaKnown RBP14.24□□□□□ -0.13
USP39-218ENST00000493829 ADCYAP1P18509 176 aa14.24□□□□□ -0.13
USP39-218ENST00000493829 TAS2R60P59551 318 aa14.24□□□□□ -0.13
USP39-218ENST00000493829 PRR9Q5T870 116 aa14.24□□□□□ -0.13
USP39-218ENST00000493829 A8MTW9 85 aa14.23□□□□□ -0.13
USP39-218ENST00000493829 MGST1P10620 155 aaKnown RBP14.23□□□□□ -0.13
USP39-218ENST00000493829 LEPP41159 167 aa14.23□□□□□ -0.13
USP39-218ENST00000493829 DNAH3Q8TD57 4116 aa14.23□□□□□ -0.13
USP39-218ENST00000493829 TRBV6-1A0A0K0K1D8 114 aa14.23□□□□□ -0.13
USP39-218ENST00000493829 FBLL1A6NHQ2 334 aaKnown RBP14.23□□□□□ -0.13
USP39-218ENST00000493829 F8W036 122 aa14.23□□□□□ -0.13
USP39-218ENST00000493829 BTN1A1Q13410 526 aa14.23□□□□□ -0.13
USP39-218ENST00000493829 PRR27Q6MZM9 219 aa14.23□□□□□ -0.13
USP39-218ENST00000493829 FAM19A4Q96LR4 140 aa14.23□□□□□ -0.13
USP39-218ENST00000493829 LOC102724200A0A096LPH7 203 aaPredicted RBP14.22□□□□□ -0.13
USP39-218ENST00000493829 K7EIL1 84 aa14.22□□□□□ -0.13
USP39-218ENST00000493829 ZFAND2AQ8N6M9 145 aa14.22□□□□□ -0.13
USP39-218ENST00000493829 ZC2HC1AQ96GY0 325 aa14.22□□□□□ -0.13
USP39-218ENST00000493829 XCL2Q9UBD3 114 aa14.22□□□□□ -0.13
USP39-218ENST00000493829 C9JCJ5 164 aa14.21□□□□□ -0.13
USP39-218ENST00000493829 CA1P00915 261 aaPredicted RBP14.21□□□□□ -0.13
USP39-218ENST00000493829 GPX1P07203 203 aa14.21□□□□□ -0.13
USP39-218ENST00000493829 RNASE4P34096 147 aaKnown RBP14.21□□□□□ -0.13
USP39-218ENST00000493829 CDKN1BP46527 198 aa14.21□□□□□ -0.13
USP39-218ENST00000493829 SAPCD1Q5SSQ6 148 aa14.21□□□□□ -0.13
USP39-218ENST00000493829 TMEM183AQ8IXX5 376 aa14.21□□□□□ -0.13
USP39-218ENST00000493829 ODF3Q96PU9 254 aa14.21□□□□□ -0.13
USP39-218ENST00000493829 ZFP30Q9Y2G7 519 aa14.21□□□□□ -0.13
USP39-218ENST00000493829 GCGP01275 180 aa14.2□□□□□ -0.14
USP39-218ENST00000493829 IGLV2-8P01709 118 aa14.2□□□□□ -0.14
USP39-218ENST00000493829 TSPOP30536 169 aa14.2□□□□□ -0.14
USP39-218ENST00000493829 NUTF2P61970 127 aaKnown RBP14.2□□□□□ -0.14
USP39-218ENST00000493829 GFI1BQ5VTD9 330 aa14.2□□□□□ -0.14
USP39-218ENST00000493829 Q6ZQT7 251 aa14.2□□□□□ -0.14
USP39-218ENST00000493829 CRISP2P16562 243 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 122.1 ms