RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 MED28Q9H204 178 aa12.65□□□□□ -0.38
UPF3A-203ENST00000474056 DNAH2Q9P225 4427 aa12.64□□□□□ -0.39
UPF3A-203ENST00000474056 KLLNB2CW77 178 aa12.64□□□□□ -0.39
UPF3A-203ENST00000474056 C9orf47Q6ZRZ4 202 aa12.64□□□□□ -0.39
UPF3A-203ENST00000474056 LINC00477Q96M19 166 aa12.64□□□□□ -0.39
UPF3A-203ENST00000474056 VGLL1Q99990 258 aa12.64□□□□□ -0.39
UPF3A-203ENST00000474056 C7orf71A4D174 169 aa12.63□□□□□ -0.39
UPF3A-203ENST00000474056 SLC25A5P05141 298 aaKnown RBP12.63□□□□□ -0.39
UPF3A-203ENST00000474056 UBE2L3P68036 154 aaKnown RBP12.63□□□□□ -0.39
UPF3A-203ENST00000474056 BTN1A1Q13410 526 aa12.63□□□□□ -0.39
UPF3A-203ENST00000474056 KHDC3LQ587J8 217 aa12.63□□□□□ -0.39
UPF3A-203ENST00000474056 CCDC28AQ8IWP9 274 aa12.63□□□□□ -0.39
UPF3A-203ENST00000474056 F5H768 121 aa12.62□□□□□ -0.39
UPF3A-203ENST00000474056 ATP5G1P05496 136 aa12.62□□□□□ -0.39
UPF3A-203ENST00000474056 CRISP2P16562 243 aa12.62□□□□□ -0.39
UPF3A-203ENST00000474056 ATP5G3P48201 142 aa12.62□□□□□ -0.39
UPF3A-203ENST00000474056 CD300CQ08708 224 aa12.62□□□□□ -0.39
UPF3A-203ENST00000474056 TMEM78Q5T7P6 136 aa12.62□□□□□ -0.39
UPF3A-203ENST00000474056 UBE2DNLQ8IWF7 75 aa12.62□□□□□ -0.39
UPF3A-203ENST00000474056 PYGO2Q9BRQ0 406 aa12.62□□□□□ -0.39
UPF3A-203ENST00000474056 Q9H3A6 140 aa12.62□□□□□ -0.39
UPF3A-203ENST00000474056 DNAH17Q9UFH2 4485 aa12.61□□□□□ -0.39
UPF3A-203ENST00000474056 CBY3A6NI87 242 aa12.61□□□□□ -0.39
UPF3A-203ENST00000474056 ZNF324O75467 553 aaPredicted RBP12.61□□□□□ -0.39
UPF3A-203ENST00000474056 TAS2R45P59539 299 aa12.61□□□□□ -0.39
UPF3A-203ENST00000474056 RANP62826 216 aaKnown RBP12.61□□□□□ -0.39
UPF3A-203ENST00000474056 Q5BKY6 102 aa12.61□□□□□ -0.39
UPF3A-203ENST00000474056 PRR9Q5T870 116 aa12.61□□□□□ -0.39
UPF3A-203ENST00000474056 LINC00612Q8N6U2 182 aa12.61□□□□□ -0.39
UPF3A-203ENST00000474056 ZNF492Q9P255 531 aa12.61□□□□□ -0.39
UPF3A-203ENST00000474056 SNURFLB1AK76 121 aa12.6□□□□□ -0.39
UPF3A-203ENST00000474056 M6PRP20645 277 aa12.6□□□□□ -0.39
UPF3A-203ENST00000474056 RNASE4P34096 147 aaKnown RBP12.6□□□□□ -0.39
UPF3A-203ENST00000474056 RAB2AP61019 212 aa12.6□□□□□ -0.39
UPF3A-203ENST00000474056 ACOT6Q3I5F7 207 aaPredicted RBP12.6□□□□□ -0.39
UPF3A-203ENST00000474056 LYPD1Q8N2G4 141 aa12.6□□□□□ -0.39
UPF3A-203ENST00000474056 ZFAND2AQ8N6M9 145 aa12.6□□□□□ -0.39
UPF3A-203ENST00000474056 C15orf53Q8NAA6 179 aa12.6□□□□□ -0.39
UPF3A-203ENST00000474056 Q8TAT8 98 aa12.6□□□□□ -0.39
UPF3A-203ENST00000474056 AQP10Q96PS8 301 aa12.6□□□□□ -0.39
UPF3A-203ENST00000474056 GPX1P07203 203 aa12.59□□□□□ -0.39
UPF3A-203ENST00000474056 Q6ZQT7 251 aa12.59□□□□□ -0.39
UPF3A-203ENST00000474056 HSD17B11Q8NBQ5 300 aa12.59□□□□□ -0.39
UPF3A-203ENST00000474056 MUC4Q99102 2169 aa12.59□□□□□ -0.39
UPF3A-203ENST00000474056 GAGE12BA1L429 117 aa12.58□□□□□ -0.4
UPF3A-203ENST00000474056 M0R2N4 97 aa12.58□□□□□ -0.4
UPF3A-203ENST00000474056 GAGE7O76087 117 aa12.58□□□□□ -0.4
UPF3A-203ENST00000474056 GIPP09681 153 aaPredicted RBP12.58□□□□□ -0.4
UPF3A-203ENST00000474056 GAGE12FP0CL80 117 aa12.58□□□□□ -0.4
UPF3A-203ENST00000474056 GAGE12GP0CL81 117 aa12.58□□□□□ -0.4
UPF3A-203ENST00000474056 GAGE12IP0CL82 117 aa12.58□□□□□ -0.4
UPF3A-203ENST00000474056 CSN1S1P47710 185 aa12.58□□□□□ -0.4
UPF3A-203ENST00000474056 ZNF266Q14584 549 aa12.58□□□□□ -0.4
UPF3A-203ENST00000474056 C11orf72Q8NBR9 251 aa12.58□□□□□ -0.4
UPF3A-203ENST00000474056 FAT2Q9NYQ8 4349 aa12.58□□□□□ -0.4
UPF3A-203ENST00000474056 IGLV2-18A0A075B6J9 118 aa12.57□□□□□ -0.4
UPF3A-203ENST00000474056 A0A1W2PPV4 95 aa12.57□□□□□ -0.4
UPF3A-203ENST00000474056 DIRC3C9JPN6 131 aa12.57□□□□□ -0.4
UPF3A-203ENST00000474056 HMGB3O15347 200 aaKnown RBP12.57□□□□□ -0.4
UPF3A-203ENST00000474056 NMBP08949 121 aa12.57□□□□□ -0.4
UPF3A-203ENST00000474056 ZNF138P52744 262 aa12.57□□□□□ -0.4
UPF3A-203ENST00000474056 RNF212Q495C1 297 aa12.57□□□□□ -0.4
UPF3A-203ENST00000474056 PQLC2Q6ZP29 291 aa12.57□□□□□ -0.4
UPF3A-203ENST00000474056 EIF4E3Q8N5X7 224 aaKnown RBP12.57□□□□□ -0.4
UPF3A-203ENST00000474056 OR10G4Q8NGN3 311 aa12.57□□□□□ -0.4
UPF3A-203ENST00000474056 OR10G9Q8NGN4 311 aa12.57□□□□□ -0.4
UPF3A-203ENST00000474056 OR10G7Q8NGN6 311 aa12.57□□□□□ -0.4
UPF3A-203ENST00000474056 LINC00467Q9BRT7 94 aa12.57□□□□□ -0.4
UPF3A-203ENST00000474056 HECTD4Q9Y4D8 3996 aa12.56□□□□□ -0.4
UPF3A-203ENST00000474056 RBAKDNA6NC62 111 aa12.56□□□□□ -0.4
UPF3A-203ENST00000474056 NUDT3O95989 172 aa12.56□□□□□ -0.4
UPF3A-203ENST00000474056 ANXA2RQ3ZCQ2 193 aa12.56□□□□□ -0.4
UPF3A-203ENST00000474056 Q6ZTI0 123 aa12.56□□□□□ -0.4
UPF3A-203ENST00000474056 ZNF680Q8NEM1 530 aa12.56□□□□□ -0.4
UPF3A-203ENST00000474056 OR2G3Q8NGZ4 309 aa12.56□□□□□ -0.4
UPF3A-203ENST00000474056 GSN-AS1Q9NRJ2 163 aa12.56□□□□□ -0.4
UPF3A-203ENST00000474056 ATP6V0CP27449 155 aa12.55□□□□□ -0.4
UPF3A-203ENST00000474056 DAZ2Q13117 558 aaKnown RBP12.55□□□□□ -0.4
UPF3A-203ENST00000474056 ASB13Q8WXK3 278 aa12.55□□□□□ -0.4
UPF3A-203ENST00000474056 HYLS1Q96M11 299 aa12.55□□□□□ -0.4
UPF3A-203ENST00000474056 PSMG3Q9BT73 122 aaPredicted RBP12.55□□□□□ -0.4
UPF3A-203ENST00000474056 OTORQ9NRC9 128 aa12.55□□□□□ -0.4
UPF3A-203ENST00000474056 TP53TG3Q9ULZ0 132 aa12.55□□□□□ -0.4
UPF3A-203ENST00000474056 RPH3ALQ9UNE2 315 aa12.55□□□□□ -0.4
UPF3A-203ENST00000474056 IGHV1OR15-1A0A075B7D0 117 aa12.54□□□□□ -0.4
UPF3A-203ENST00000474056 TRBV7-9A0A0J9YWB2 115 aa12.54□□□□□ -0.4
UPF3A-203ENST00000474056 RNF222A6NCQ9 220 aa12.54□□□□□ -0.4
UPF3A-203ENST00000474056 PGPA6NDG6 321 aa12.54□□□□□ -0.4
UPF3A-203ENST00000474056 RGS13O14921 159 aa12.54□□□□□ -0.4
UPF3A-203ENST00000474056 HOXA5P20719 270 aa12.54□□□□□ -0.4
UPF3A-203ENST00000474056 CDC34P49427 236 aaPredicted RBP12.54□□□□□ -0.4
UPF3A-203ENST00000474056 OR5I1Q13606 314 aa12.54□□□□□ -0.4
UPF3A-203ENST00000474056 RGS21Q2M5E4 152 aa12.54□□□□□ -0.4
UPF3A-203ENST00000474056 LGALS9BQ3B8N2 356 aa12.54□□□□□ -0.4
UPF3A-203ENST00000474056 RXFP4Q8TDU9 374 aa12.54□□□□□ -0.4
UPF3A-203ENST00000474056 KLF12Q9Y4X4 402 aa12.54□□□□□ -0.4
UPF3A-203ENST00000474056 FXYD6-FXYD2A0A087WZ82 144 aa12.53□□□□□ -0.4
UPF3A-203ENST00000474056 ARL14EPLP0DKL9 152 aa12.53□□□□□ -0.4
UPF3A-203ENST00000474056 TCL1AP56279 114 aa12.53□□□□□ -0.4
UPF3A-203ENST00000474056 ATG101Q9BSB4 218 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 147.8 ms