RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 SRSF12Q8WXF0 261 aaKnown RBP7.55□□□□□ -1.2
HDAC3-205ENST00000469550 TMEM158Q8WZ71 300 aa7.55□□□□□ -1.2
HDAC3-205ENST00000469550 HIGD1AQ9Y241 93 aa7.55□□□□□ -1.2
HDAC3-205ENST00000469550 MXRA5Q9NR99 2828 aa7.55□□□□□ -1.2
HDAC3-205ENST00000469550 M0R1B8 84 aa7.55□□□□□ -1.2
HDAC3-205ENST00000469550 CT45A10P0DMU9 189 aa7.55□□□□□ -1.2
HDAC3-205ENST00000469550 KIR3DS1Q14943 382 aa7.55□□□□□ -1.2
HDAC3-205ENST00000469550 PRNTQ86SH4 94 aa7.55□□□□□ -1.2
HDAC3-205ENST00000469550 LYPD1Q8N2G4 141 aa7.55□□□□□ -1.2
HDAC3-205ENST00000469550 PIP4P2Q8N4L2 257 aa7.55□□□□□ -1.2
HDAC3-205ENST00000469550 JMJD8Q96S16 334 aa7.55□□□□□ -1.2
HDAC3-205ENST00000469550 H3BUT2 72 aa7.54□□□□□ -1.2
HDAC3-205ENST00000469550 GOLT1AQ6ZVE7 132 aa7.54□□□□□ -1.2
HDAC3-205ENST00000469550 C10orf105Q8TEF2 133 aa7.54□□□□□ -1.2
HDAC3-205ENST00000469550 ZC2HC1AQ96GY0 325 aa7.54□□□□□ -1.2
HDAC3-205ENST00000469550 STAB1Q9NY15 2570 aa7.53□□□□□ -1.2
HDAC3-205ENST00000469550 TRAV8-1A0A0A6YYK1 113 aa7.53□□□□□ -1.2
HDAC3-205ENST00000469550 A0A1W2PPM0 123 aa7.53□□□□□ -1.2
HDAC3-205ENST00000469550 K7EQM0 130 aa7.53□□□□□ -1.2
HDAC3-205ENST00000469550 SNAI2O43623 268 aa7.53□□□□□ -1.2
HDAC3-205ENST00000469550 IFI27P40305 119 aaPredicted RBP7.53□□□□□ -1.2
HDAC3-205ENST00000469550 EFNA4P52798 201 aa7.53□□□□□ -1.2
HDAC3-205ENST00000469550 PAX8Q06710 450 aa7.53□□□□□ -1.2
HDAC3-205ENST00000469550 RUSC1-AS1Q66K80 236 aa7.53□□□□□ -1.2
HDAC3-205ENST00000469550 SLC25A39Q9BZJ4 359 aaPredicted RBP7.53□□□□□ -1.2
HDAC3-205ENST00000469550 SIGLEC8Q9NYZ4 499 aa7.53□□□□□ -1.2
HDAC3-205ENST00000469550 SLC25A17O43808 307 aa7.53□□□□□ -1.2
HDAC3-205ENST00000469550 TNFRSF1AP19438 455 aa7.53□□□□□ -1.2
HDAC3-205ENST00000469550 RPL27AP46776 148 aaKnown RBP7.53□□□□□ -1.2
HDAC3-205ENST00000469550 TMEM200BQ69YZ2 307 aa7.53□□□□□ -1.2
HDAC3-205ENST00000469550 PSG8Q9UQ74 426 aa7.53□□□□□ -1.2
HDAC3-205ENST00000469550 ARFGEF3Q5TH69 2177 aa7.53□□□□□ -1.2
HDAC3-205ENST00000469550 HEATR1Q9H583 2144 aaKnown RBP7.52□□□□□ -1.21
HDAC3-205ENST00000469550 TRBV19A0A075B6N1 114 aa7.52□□□□□ -1.21
HDAC3-205ENST00000469550 TMEM189A5PLL7 270 aa7.52□□□□□ -1.21
HDAC3-205ENST00000469550 H3BTX0 84 aa7.52□□□□□ -1.21
HDAC3-205ENST00000469550 NDUFS8O00217 210 aa7.52□□□□□ -1.21
HDAC3-205ENST00000469550 HBDP02042 147 aa7.52□□□□□ -1.21
HDAC3-205ENST00000469550 CRYGBP07316 175 aa7.52□□□□□ -1.21
HDAC3-205ENST00000469550 IGHV4-31P0DP07 118 aa7.52□□□□□ -1.21
HDAC3-205ENST00000469550 SCGB1A1P11684 91 aa7.52□□□□□ -1.21
HDAC3-205ENST00000469550 CCL3L1P16619 93 aa7.52□□□□□ -1.21
HDAC3-205ENST00000469550 PSG3Q16557 428 aa7.52□□□□□ -1.21
HDAC3-205ENST00000469550 FAM104BQ5XKR9 115 aa7.52□□□□□ -1.21
HDAC3-205ENST00000469550 HCP5Q6MZN7 132 aa7.52□□□□□ -1.21
HDAC3-205ENST00000469550 VHLLQ6RSH7 139 aa7.52□□□□□ -1.21
HDAC3-205ENST00000469550 ORMDL3Q8N138 153 aa7.52□□□□□ -1.21
HDAC3-205ENST00000469550 EXOC3-AS1Q8N2X6 119 aa7.52□□□□□ -1.21
HDAC3-205ENST00000469550 OR8A1Q8NGG7 326 aa7.52□□□□□ -1.21
HDAC3-205ENST00000469550 THYN1Q9P016 225 aa7.52□□□□□ -1.21
HDAC3-205ENST00000469550 HIGD1BQ9P298 99 aa7.52□□□□□ -1.21
HDAC3-205ENST00000469550 TIMM8BQ9Y5J9 83 aaPredicted RBP7.52□□□□□ -1.21
HDAC3-205ENST00000469550 F11RQ9Y624 299 aaKnown RBP7.52□□□□□ -1.21
HDAC3-205ENST00000469550 SPCS1Q9Y6A9 102 aa7.52□□□□□ -1.21
HDAC3-205ENST00000469550 CACNG7P62955 275 aa7.51□□□□□ -1.21
HDAC3-205ENST00000469550 COX8CQ7Z4L0 72 aa7.51□□□□□ -1.21
HDAC3-205ENST00000469550 LHFPL4Q7Z7J7 247 aa7.51□□□□□ -1.21
HDAC3-205ENST00000469550 ZNF414Q96IQ9 312 aa7.51□□□□□ -1.21
HDAC3-205ENST00000469550 PRELID3AQ96N28 172 aa7.51□□□□□ -1.21
HDAC3-205ENST00000469550 TPSG1Q9NRR2 321 aa7.51□□□□□ -1.21
HDAC3-205ENST00000469550 INSIG2Q9Y5U4 225 aa7.51□□□□□ -1.21
HDAC3-205ENST00000469550 FAM106CPP0CH98 169 aa7.51□□□□□ -1.21
HDAC3-205ENST00000469550 FABP2P12104 132 aa7.51□□□□□ -1.21
HDAC3-205ENST00000469550 CRIP1P50238 77 aa7.51□□□□□ -1.21
HDAC3-205ENST00000469550 DIAPH2-AS1Q14236 149 aa7.51□□□□□ -1.21
HDAC3-205ENST00000469550 LINC01559Q495D7 138 aa7.51□□□□□ -1.21
HDAC3-205ENST00000469550 FAM106AQ4KMX7 169 aa7.51□□□□□ -1.21
HDAC3-205ENST00000469550 SIGLEC15Q6ZMC9 328 aa7.51□□□□□ -1.21
HDAC3-205ENST00000469550 IFI27L1Q96BM0 104 aa7.51□□□□□ -1.21
HDAC3-205ENST00000469550 SHANK2-AS3Q9BTD1 123 aa7.51□□□□□ -1.21
HDAC3-205ENST00000469550 SERTM2A0A1B0GWG4 89 aa7.5□□□□□ -1.21
HDAC3-205ENST00000469550 LINC01546A6NGU7 62 aa7.5□□□□□ -1.21
HDAC3-205ENST00000469550 D6R8Y8 96 aa7.5□□□□□ -1.21
HDAC3-205ENST00000469550 SMIM13P0DJ93 91 aa7.5□□□□□ -1.21
HDAC3-205ENST00000469550 S100A7P31151 101 aa7.5□□□□□ -1.21
HDAC3-205ENST00000469550 LYZP61626 148 aa7.5□□□□□ -1.21
HDAC3-205ENST00000469550 NUP37Q8NFH4 326 aa7.5□□□□□ -1.21
HDAC3-205ENST00000469550 VSTM5A8MXK1 200 aa7.5□□□□□ -1.21
HDAC3-205ENST00000469550 H3BRN7 92 aa7.5□□□□□ -1.21
HDAC3-205ENST00000469550 TNFRSF13BO14836 293 aaPredicted RBP7.5□□□□□ -1.21
HDAC3-205ENST00000469550 KRTAP24-1Q3LI83 254 aa7.5□□□□□ -1.21
HDAC3-205ENST00000469550 TNFRSF14Q92956 283 aa7.5□□□□□ -1.21
HDAC3-205ENST00000469550 RITA1Q96K30 269 aa7.5□□□□□ -1.21
HDAC3-205ENST00000469550 SRSF8Q9BRL6 282 aaKnown RBP7.5□□□□□ -1.21
HDAC3-205ENST00000469550 PIMREGQ9BSJ6 248 aa7.5□□□□□ -1.21
HDAC3-205ENST00000469550 HILPDAQ9Y5L2 63 aa7.5□□□□□ -1.21
HDAC3-205ENST00000469550 MALRD1Q5VYJ5 2156 aa7.49□□□□□ -1.21
HDAC3-205ENST00000469550 FBLL1A6NHQ2 334 aaKnown RBP7.49□□□□□ -1.21
HDAC3-205ENST00000469550 I3L2K1 104 aa7.49□□□□□ -1.21
HDAC3-205ENST00000469550 FCN3O75636 299 aa7.49□□□□□ -1.21
HDAC3-205ENST00000469550 DLX6P56179 175 aa7.49□□□□□ -1.21
HDAC3-205ENST00000469550 MRPL51Q4U2R6 128 aaKnown RBP7.49□□□□□ -1.21
HDAC3-205ENST00000469550 SAMD5Q5TGI4 173 aa7.49□□□□□ -1.21
HDAC3-205ENST00000469550 RASL11BQ9BPW5 248 aa7.49□□□□□ -1.21
HDAC3-205ENST00000469550 ZMAT4Q9H898 229 aa7.49□□□□□ -1.21
HDAC3-205ENST00000469550 SIGLEC9Q9Y336 463 aa7.49□□□□□ -1.21
HDAC3-205ENST00000469550 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP7.49□□□□□ -1.211e-6■■■■■ 26.8
HDAC3-205ENST00000469550 LOC389332A0A1B0GUA5 103 aa7.48□□□□□ -1.21
HDAC3-205ENST00000469550 B9A039 149 aa7.48□□□□□ -1.21
HDAC3-205ENST00000469550 TEX22C9J3V5 150 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 69 ms