RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 ZNF660Q6AZW8 331 aaPredicted RBP3.24□□□□□ -1.89
CCDC88A-210ENST00000468534 CGB2Q6NT52 195 aa3.24□□□□□ -1.89
CCDC88A-210ENST00000468534 POM121L12Q8N7R1 296 aa3.24□□□□□ -1.89
CCDC88A-210ENST00000468534 CLEC2BQ92478 149 aa3.24□□□□□ -1.89
CCDC88A-210ENST00000468534 NABP2Q9BQ15 211 aa3.24□□□□□ -1.89
CCDC88A-210ENST00000468534 RPP21Q9H633 154 aaKnown RBP3.24□□□□□ -1.89
CCDC88A-210ENST00000468534 CRB1P82279 1406 aa3.24□□□□□ -1.89
CCDC88A-210ENST00000468534 LOXHD1Q8IVV2 1947 aa3.24□□□□□ -1.89
CCDC88A-210ENST00000468534 CITO14578 2027 aa3.24□□□□□ -1.89
CCDC88A-210ENST00000468534 PXDNQ92626 1479 aa3.23□□□□□ -1.89
CCDC88A-210ENST00000468534 PRXQ9BXM0 1461 aa3.23□□□□□ -1.89
CCDC88A-210ENST00000468534 hADV29S1A0JD25 119 aa3.23□□□□□ -1.89
CCDC88A-210ENST00000468534 C7orf77A4D0Y5 90 aa3.23□□□□□ -1.89
CCDC88A-210ENST00000468534 ATOX1O00244 68 aa3.23□□□□□ -1.89
CCDC88A-210ENST00000468534 APCSP02743 223 aa3.23□□□□□ -1.89
CCDC88A-210ENST00000468534 IL5P05113 134 aa3.23□□□□□ -1.89
CCDC88A-210ENST00000468534 CKS2P33552 79 aa3.23□□□□□ -1.89
CCDC88A-210ENST00000468534 FAUP35544 74 aaKnown RBP3.23□□□□□ -1.89
CCDC88A-210ENST00000468534 INSL4Q14641 139 aa3.23□□□□□ -1.89
CCDC88A-210ENST00000468534 SPATA45Q537H7 98 aa3.23□□□□□ -1.89
CCDC88A-210ENST00000468534 C2orf83Q53S99 150 aa3.23□□□□□ -1.89
CCDC88A-210ENST00000468534 CNEP1R1Q8N9A8 125 aa3.23□□□□□ -1.89
CCDC88A-210ENST00000468534 LINC01006Q8NI28 216 aa3.23□□□□□ -1.89
CCDC88A-210ENST00000468534 FAM213BQ8TBF2 198 aa3.23□□□□□ -1.89
CCDC88A-210ENST00000468534 SPTSSAQ969W0 71 aa3.23□□□□□ -1.89
CCDC88A-210ENST00000468534 SIPA1L1O43166 1804 aa3.23□□□□□ -1.89
CCDC88A-210ENST00000468534 PARP14Q460N5 1801 aa3.23□□□□□ -1.89
CCDC88A-210ENST00000468534 CHD4Q14839 1912 aa3.23□□□□□ -1.89
CCDC88A-210ENST00000468534 CROCCQ5TZA2 2017 aa3.22□□□□□ -1.89
CCDC88A-210ENST00000468534 BLMP54132 1417 aaPredicted RBP3.22□□□□□ -1.89
CCDC88A-210ENST00000468534 KIAA1671Q9BY89 1806 aa3.22□□□□□ -1.89
CCDC88A-210ENST00000468534 TMEM235A6NFC5 223 aa3.22□□□□□ -1.89
CCDC88A-210ENST00000468534 C17orf51A8MQB3 221 aa3.22□□□□□ -1.89
CCDC88A-210ENST00000468534 K7EM74 188 aa3.22□□□□□ -1.89
CCDC88A-210ENST00000468534 NUPR1O60356 82 aa3.22□□□□□ -1.89
CCDC88A-210ENST00000468534 SIX6O95475 246 aa3.22□□□□□ -1.89
CCDC88A-210ENST00000468534 IGHV1-69P01742 117 aa3.22□□□□□ -1.89
CCDC88A-210ENST00000468534 SLC25A16P16260 332 aa3.22□□□□□ -1.89
CCDC88A-210ENST00000468534 FUT5Q11128 374 aa3.22□□□□□ -1.89
CCDC88A-210ENST00000468534 WFDC2Q14508 124 aa3.22□□□□□ -1.89
CCDC88A-210ENST00000468534 ETDBQ3ZM63 59 aa3.22□□□□□ -1.89
CCDC88A-210ENST00000468534 NMSQ5H8A3 153 aa3.22□□□□□ -1.89
CCDC88A-210ENST00000468534 C15orf56Q8N910 161 aa3.22□□□□□ -1.89
CCDC88A-210ENST00000468534 CHCHD1Q96BP2 118 aaKnown RBP3.22□□□□□ -1.89
CCDC88A-210ENST00000468534 GABARAPL1Q9H0R8 117 aa3.22□□□□□ -1.89
CCDC88A-210ENST00000468534 ZNF638Q14966 1978 aaKnown RBP3.21□□□□□ -1.89
CCDC88A-210ENST00000468534 SETBP1Q9Y6X0 1596 aa3.21□□□□□ -1.89
CCDC88A-210ENST00000468534 SBF2Q86WG5 1849 aa3.21□□□□□ -1.89
CCDC88A-210ENST00000468534 CHD3Q12873 2000 aaKnown RBP3.21□□□□□ -1.9
CCDC88A-210ENST00000468534 CUX1P39880 1505 aa3.21□□□□□ -1.9
CCDC88A-210ENST00000468534 A0A087WWC5 75 aa3.21□□□□□ -1.9
CCDC88A-210ENST00000468534 TRAV14DV4A0A0A6YYC5 116 aa3.21□□□□□ -1.9
CCDC88A-210ENST00000468534 A8MWP4 228 aa3.21□□□□□ -1.9
CCDC88A-210ENST00000468534 IBA57-AS1B1ANH7 110 aa3.21□□□□□ -1.9
CCDC88A-210ENST00000468534 SYS1-DBNDD2H3BUS1 97 aa3.21□□□□□ -1.9
CCDC88A-210ENST00000468534 LECT2O14960 151 aa3.21□□□□□ -1.9
CCDC88A-210ENST00000468534 SLC25A20O43772 301 aa3.21□□□□□ -1.9
CCDC88A-210ENST00000468534 HSPB1P04792 205 aaKnown RBP3.21□□□□□ -1.9
CCDC88A-210ENST00000468534 PEBP1P30086 187 aaKnown RBP3.21□□□□□ -1.9
CCDC88A-210ENST00000468534 CCL8P80075 99 aa3.21□□□□□ -1.9
CCDC88A-210ENST00000468534 MIAQ16674 131 aa3.21□□□□□ -1.9
CCDC88A-210ENST00000468534 ZNF322Q6U7Q0 402 aaPredicted RBP3.21□□□□□ -1.9
CCDC88A-210ENST00000468534 C18orf32Q8TCD1 76 aa3.21□□□□□ -1.9
CCDC88A-210ENST00000468534 MUCL1Q96DR8 90 aa3.21□□□□□ -1.9
CCDC88A-210ENST00000468534 CYTL1Q9NRR1 136 aa3.21□□□□□ -1.9
CCDC88A-210ENST00000468534 PRO0461Q9UI25 63 aa3.21□□□□□ -1.9
CCDC88A-210ENST00000468534 TNRC6AQ8NDV7 1962 aaKnown RBP3.21□□□□□ -1.9
CCDC88A-210ENST00000468534 ATP10BO94823 1461 aa3.21□□□□□ -1.9
CCDC88A-210ENST00000468534 MYH6P13533 1939 aa3.21□□□□□ -1.9
CCDC88A-210ENST00000468534 PLXNB3Q9ULL4 1909 aa3.21□□□□□ -1.9
CCDC88A-210ENST00000468534 NUP205Q92621 2012 aa3.2□□□□□ -1.9
CCDC88A-210ENST00000468534 IGLV11-55A0A075B6I3 123 aa3.2□□□□□ -1.9
CCDC88A-210ENST00000468534 MUC21A0A140T8X8 626 aa3.2□□□□□ -1.9
CCDC88A-210ENST00000468534 C19orf71A6NCJ1 209 aa3.2□□□□□ -1.9
CCDC88A-210ENST00000468534 J3QLW9 94 aa3.2□□□□□ -1.9
CCDC88A-210ENST00000468534 CREBL2O60519 120 aaPredicted RBP3.2□□□□□ -1.9
CCDC88A-210ENST00000468534 SH2D1AO60880 128 aa3.2□□□□□ -1.9
CCDC88A-210ENST00000468534 NPYP01303 97 aa3.2□□□□□ -1.9
CCDC88A-210ENST00000468534 IGKV1D-33P01593 117 aa3.2□□□□□ -1.9
CCDC88A-210ENST00000468534 IGKV1-33P01594 117 aa3.2□□□□□ -1.9
CCDC88A-210ENST00000468534 IGKV3-15P01624 115 aa3.2□□□□□ -1.9
CCDC88A-210ENST00000468534 TLX1NBP0CAT3 122 aa3.2□□□□□ -1.9
CCDC88A-210ENST00000468534 SUPT4H1P63272 117 aaKnown RBP3.2□□□□□ -1.9
CCDC88A-210ENST00000468534 Q6P435 159 aa3.2□□□□□ -1.9
CCDC88A-210ENST00000468534 Q6ZQT7 251 aa3.2□□□□□ -1.9
CCDC88A-210ENST00000468534 ZNF525Q8N782 197 aa3.2□□□□□ -1.9
CCDC88A-210ENST00000468534 CIRBP-AS1Q8TBR5 109 aa3.2□□□□□ -1.9
CCDC88A-210ENST00000468534 SMCR5Q8TEV8 140 aa3.2□□□□□ -1.9
CCDC88A-210ENST00000468534 MGST2Q99735 147 aa3.2□□□□□ -1.9
CCDC88A-210ENST00000468534 CXCL16Q9H2A7 254 aa3.2□□□□□ -1.9
CCDC88A-210ENST00000468534 SMDT1Q9H4I9 107 aa3.2□□□□□ -1.9
CCDC88A-210ENST00000468534 ZNF581Q9P0T4 197 aa3.2□□□□□ -1.9
CCDC88A-210ENST00000468534 ROBO1Q9Y6N7 1651 aa3.2□□□□□ -1.9
CCDC88A-210ENST00000468534 LTN1O94822 1766 aa3.2□□□□□ -1.9
CCDC88A-210ENST00000468534 DOCK8Q8NF50 2099 aa3.2□□□□□ -1.9
CCDC88A-210ENST00000468534 ATG2BQ96BY7 2078 aa3.2□□□□□ -1.9
CCDC88A-210ENST00000468534 ARHGEF12Q9NZN5 1544 aa3.19□□□□□ -1.9
CCDC88A-210ENST00000468534 GPATCH8Q9UKJ3 1502 aaKnown RBP3.19□□□□□ -1.9
CCDC88A-210ENST00000468534 MADDQ8WXG6 1647 aa3.19□□□□□ -1.9
CCDC88A-210ENST00000468534 IGLV3-12A0A075B6K2 115 aa3.19□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms