RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 CD5LO43866 347 aa2.8□□□□□ -1.96
VPS29-202ENST00000447578 LINC00869P0C866 280 aa2.8□□□□□ -1.96
VPS29-202ENST00000447578 RD3LP0DJH9 198 aa2.8□□□□□ -1.96
VPS29-202ENST00000447578 RNASE2P10153 161 aaKnown RBP2.8□□□□□ -1.96
VPS29-202ENST00000447578 FABP4P15090 132 aa2.8□□□□□ -1.96
VPS29-202ENST00000447578 COL8A2P25067 703 aa2.8□□□□□ -1.96
VPS29-202ENST00000447578 IL3RAP26951 378 aa2.8□□□□□ -1.96
VPS29-202ENST00000447578 LOXP28300 417 aaPredicted RBP2.8□□□□□ -1.96
VPS29-202ENST00000447578 OR10J1P30954 320 aa2.8□□□□□ -1.96
VPS29-202ENST00000447578 UBE2AP49459 152 aa2.8□□□□□ -1.96
VPS29-202ENST00000447578 UBE2E1P51965 193 aa2.8□□□□□ -1.96
VPS29-202ENST00000447578 CACNG7P62955 275 aa2.8□□□□□ -1.96
VPS29-202ENST00000447578 PRR3P79522 188 aaKnown RBP2.8□□□□□ -1.96
VPS29-202ENST00000447578 ERHP84090 104 aaKnown RBP2.8□□□□□ -1.96
VPS29-202ENST00000447578 NDPQ00604 133 aa2.8□□□□□ -1.96
VPS29-202ENST00000447578 DIAPH2-AS1Q14236 149 aa2.8□□□□□ -1.96
VPS29-202ENST00000447578 ORMDL2Q53FV1 153 aa2.8□□□□□ -1.96
VPS29-202ENST00000447578 C2orf83Q53S99 150 aa2.8□□□□□ -1.96
VPS29-202ENST00000447578 PYY3Q5JQD4 70 aa2.8□□□□□ -1.96
VPS29-202ENST00000447578 ACTL10Q5JWF8 245 aa2.8□□□□□ -1.96
VPS29-202ENST00000447578 SSX8Q7RTT4 187 aa2.8□□□□□ -1.96
VPS29-202ENST00000447578 TMEM144Q7Z5S9 345 aa2.8□□□□□ -1.96
VPS29-202ENST00000447578 LINC01551Q86U37 167 aa2.8□□□□□ -1.96
VPS29-202ENST00000447578 PDPNQ86YL7 162 aa2.8□□□□□ -1.96
VPS29-202ENST00000447578 KRTAP11-1Q8IUC1 163 aa2.8□□□□□ -1.96
VPS29-202ENST00000447578 OR1L8Q8NGR8 309 aa2.8□□□□□ -1.96
VPS29-202ENST00000447578 OR1P1Q8NH06 330 aa2.8□□□□□ -1.96
VPS29-202ENST00000447578 OR4A5Q8NH83 315 aa2.8□□□□□ -1.96
VPS29-202ENST00000447578 RNASE6Q93091 150 aaKnown RBP2.8□□□□□ -1.96
VPS29-202ENST00000447578 FLYWCH2Q96CP2 140 aaKnown RBP2.8□□□□□ -1.96
VPS29-202ENST00000447578 UBE2E2Q96LR5 201 aa2.8□□□□□ -1.96
VPS29-202ENST00000447578 PFDN5Q99471 154 aa2.8□□□□□ -1.96
VPS29-202ENST00000447578 NABP2Q9BQ15 211 aa2.8□□□□□ -1.96
VPS29-202ENST00000447578 TXNDC17Q9BRA2 123 aa2.8□□□□□ -1.96
VPS29-202ENST00000447578 DERL1Q9BUN8 251 aa2.8□□□□□ -1.96
VPS29-202ENST00000447578 COMMD5Q9GZQ3 224 aa2.8□□□□□ -1.96
VPS29-202ENST00000447578 BET1LQ9NYM9 111 aa2.8□□□□□ -1.96
VPS29-202ENST00000447578 FUT9Q9Y231 359 aa2.8□□□□□ -1.96
VPS29-202ENST00000447578 ZNF835Q9Y2P0 537 aa2.8□□□□□ -1.96
VPS29-202ENST00000447578 WASHC3Q9Y3C0 194 aa2.8□□□□□ -1.96
VPS29-202ENST00000447578 LAMA2P24043 3122 aaKnown RBP2.8□□□□□ -1.96
VPS29-202ENST00000447578 SMIM26A0A096LP01 95 aa2.79□□□□□ -1.96
VPS29-202ENST00000447578 IGHV3-74A0A0B4J1X5 117 aa2.79□□□□□ -1.96
VPS29-202ENST00000447578 IGHV3-72A0A0B4J1Y9 119 aa2.79□□□□□ -1.96
VPS29-202ENST00000447578 TRAV5A0A0B4J249 113 aa2.79□□□□□ -1.96
VPS29-202ENST00000447578 IGHV3OR16-9A0A0B4J2B5 98 aa2.79□□□□□ -1.96
VPS29-202ENST00000447578 IGHV1-69-2A0A0G2JMI3 117 aa2.79□□□□□ -1.96
VPS29-202ENST00000447578 OR7C2O60412 319 aa2.79□□□□□ -1.96
VPS29-202ENST00000447578 GGCTO75223 188 aaKnown RBP2.79□□□□□ -1.96
VPS29-202ENST00000447578 TYMSP04818 313 aa2.79□□□□□ -1.96
VPS29-202ENST00000447578 OR5G3P0C626 314 aa2.79□□□□□ -1.96
VPS29-202ENST00000447578 C8orf88P0DMB2 117 aa2.79□□□□□ -1.96
VPS29-202ENST00000447578 CD99P14209 185 aa2.79□□□□□ -1.96
VPS29-202ENST00000447578 DLX6P56179 175 aa2.79□□□□□ -1.96
VPS29-202ENST00000447578 TAS2R45P59539 299 aa2.79□□□□□ -1.96
VPS29-202ENST00000447578 CTAG1AP78358 180 aa2.79□□□□□ -1.96
VPS29-202ENST00000447578 ZNF90Q03938 601 aa2.79□□□□□ -1.96
VPS29-202ENST00000447578 PRB3Q04118 309 aaPredicted RBP2.79□□□□□ -1.96
VPS29-202ENST00000447578 ERCC8Q13216 396 aa2.79□□□□□ -1.96
VPS29-202ENST00000447578 VMA21Q3ZAQ7 101 aa2.79□□□□□ -1.96
VPS29-202ENST00000447578 TMEM155Q4W5P6 130 aa2.79□□□□□ -1.96
VPS29-202ENST00000447578 C10orf55Q5SWW7 151 aa2.79□□□□□ -1.96
VPS29-202ENST00000447578 LINC00311Q8N616 119 aa2.79□□□□□ -1.96
VPS29-202ENST00000447578 OR4C13Q8NGP0 309 aa2.79□□□□□ -1.96
VPS29-202ENST00000447578 SGMS2Q8NHU3 365 aa2.79□□□□□ -1.96
VPS29-202ENST00000447578 VSTM2AQ8TAG5 236 aa2.79□□□□□ -1.96
VPS29-202ENST00000447578 LINC01560Q8TB33 94 aa2.79□□□□□ -1.96
VPS29-202ENST00000447578 TMEM167AQ8TBQ9 72 aa2.79□□□□□ -1.96
VPS29-202ENST00000447578 ACY3Q96HD9 319 aa2.79□□□□□ -1.96
VPS29-202ENST00000447578 SFRP2Q96HF1 295 aa2.79□□□□□ -1.96
VPS29-202ENST00000447578 BTF3L4Q96K17 158 aa2.79□□□□□ -1.96
VPS29-202ENST00000447578 PACRGQ96M98 296 aaPredicted RBP2.79□□□□□ -1.96
VPS29-202ENST00000447578 IMMP2LQ96T52 175 aa2.79□□□□□ -1.96
VPS29-202ENST00000447578 HIST1H2BLQ99880 126 aa2.79□□□□□ -1.96
VPS29-202ENST00000447578 NDUFA4L2Q9NRX3 87 aa2.79□□□□□ -1.96
VPS29-202ENST00000447578 TMEM167BQ9NRX6 74 aa2.79□□□□□ -1.96
VPS29-202ENST00000447578 TRAPPC1Q9Y5R8 145 aa2.79□□□□□ -1.96
VPS29-202ENST00000447578 KIF25-AS1Q9Y6Z4 181 aa2.79□□□□□ -1.96
VPS29-202ENST00000447578 RANBP2P49792 3224 aaKnown RBP2.79□□□□□ -1.96
VPS29-202ENST00000447578 SPTBN5Q9NRC6 3674 aaKnown RBP2.78□□□□□ -1.96
VPS29-202ENST00000447578 TRBV20OR9-2A0A075B6H5 130 aa2.78□□□□□ -1.96
VPS29-202ENST00000447578 IGKV1OR2-108A0A075B7D4 117 aa2.78□□□□□ -1.96
VPS29-202ENST00000447578 C9JCJ5 164 aa2.78□□□□□ -1.96
VPS29-202ENST00000447578 E7EUB6 86 aa2.78□□□□□ -1.96
VPS29-202ENST00000447578 INS-IGF2F8WCM5 200 aa2.78□□□□□ -1.96
VPS29-202ENST00000447578 LYNX1G3V0Z9 82 aa2.78□□□□□ -1.96
VPS29-202ENST00000447578 SLC17A3O00476 420 aa2.78□□□□□ -1.96
VPS29-202ENST00000447578 COX7A2P2O60397 106 aa2.78□□□□□ -1.96
VPS29-202ENST00000447578 REG1AP05451 166 aa2.78□□□□□ -1.96
VPS29-202ENST00000447578 OR10J4P0C629 311 aa2.78□□□□□ -1.96
VPS29-202ENST00000447578 IGHV1-8P0DP01 117 aa2.78□□□□□ -1.96
VPS29-202ENST00000447578 LYNX1P0DP58 116 aa2.78□□□□□ -1.96
VPS29-202ENST00000447578 MGST1P10620 155 aaKnown RBP2.78□□□□□ -1.96
VPS29-202ENST00000447578 CRYBB3P26998 211 aa2.78□□□□□ -1.96
VPS29-202ENST00000447578 HTR1DP28221 377 aa2.78□□□□□ -1.96
VPS29-202ENST00000447578 GNG4P50150 75 aa2.78□□□□□ -1.96
VPS29-202ENST00000447578 PPOXP50336 477 aa2.78□□□□□ -1.96
VPS29-202ENST00000447578 UBE2L3P68036 154 aaKnown RBP2.78□□□□□ -1.96
VPS29-202ENST00000447578 WT1-ASQ06250 92 aa2.78□□□□□ -1.96
VPS29-202ENST00000447578 PRSS8Q16651 343 aa2.78□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms