RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 SLC35B3Q9H1N7 401 aa7.51□□□□□ -1.21
CD44-207ENST00000425428 ZFP30Q9Y2G7 519 aa7.51□□□□□ -1.21
CD44-207ENST00000425428 LENEPQ9Y5L5 61 aa7.51□□□□□ -1.21
CD44-207ENST00000425428 TRRAPQ9Y4A5 3859 aa7.5□□□□□ -1.21
CD44-207ENST00000425428 SCO2A0A1W2PP80 73 aa7.5□□□□□ -1.21
CD44-207ENST00000425428 H3BMM0 161 aa7.5□□□□□ -1.21
CD44-207ENST00000425428 GNG4P50150 75 aa7.5□□□□□ -1.21
CD44-207ENST00000425428 TMEM183BQ1AE95 376 aa7.5□□□□□ -1.21
CD44-207ENST00000425428 DEFB121Q5J5C9 76 aa7.5□□□□□ -1.21
CD44-207ENST00000425428 SOHLH1Q5JUK2 328 aa7.5□□□□□ -1.21
CD44-207ENST00000425428 CLUHP3Q96NS8 147 aa7.5□□□□□ -1.21
CD44-207ENST00000425428 TRBV7-9A0A0J9YWB2 115 aa7.49□□□□□ -1.21
CD44-207ENST00000425428 LINC00862A6NCI5 91 aa7.49□□□□□ -1.21
CD44-207ENST00000425428 NPIPB6E9PJ23 425 aa7.49□□□□□ -1.21
CD44-207ENST00000425428 F6UB75 175 aa7.49□□□□□ -1.21
CD44-207ENST00000425428 GPX1P07203 203 aa7.49□□□□□ -1.21
CD44-207ENST00000425428 ZNF705DP0CH99 300 aaPredicted RBP7.49□□□□□ -1.21
CD44-207ENST00000425428 ZNF705BP0CI00 300 aaPredicted RBP7.49□□□□□ -1.21
CD44-207ENST00000425428 KRTAP10-11P60412 298 aa7.49□□□□□ -1.21
CD44-207ENST00000425428 KPRPQ5T749 579 aaPredicted RBP7.49□□□□□ -1.21
CD44-207ENST00000425428 C11orf52Q96A22 123 aa7.49□□□□□ -1.21
CD44-207ENST00000425428 ODF3Q96PU9 254 aa7.49□□□□□ -1.21
CD44-207ENST00000425428 PSG8Q9UQ74 426 aa7.49□□□□□ -1.21
CD44-207ENST00000425428 AGRNO00468 2067 aa7.49□□□□□ -1.21
CD44-207ENST00000425428 ZNF727A8MUV8 499 aa7.48□□□□□ -1.21
CD44-207ENST00000425428 PRAC2D3DTV9 90 aa7.48□□□□□ -1.21
CD44-207ENST00000425428 RPL35AP18077 110 aaKnown RBP7.48□□□□□ -1.21
CD44-207ENST00000425428 RPL35P42766 123 aaKnown RBP7.48□□□□□ -1.21
CD44-207ENST00000425428 CDKN1BP46527 198 aa7.48□□□□□ -1.21
CD44-207ENST00000425428 ERCC8Q13216 396 aa7.48□□□□□ -1.21
CD44-207ENST00000425428 SMUG1Q53HV7 270 aa7.48□□□□□ -1.21
CD44-207ENST00000425428 BAGE2Q86Y30 109 aa7.48□□□□□ -1.21
CD44-207ENST00000425428 SMIM7Q9BQ49 75 aa7.48□□□□□ -1.21
CD44-207ENST00000425428 ZNF492Q9P255 531 aa7.48□□□□□ -1.21
CD44-207ENST00000425428 KIR2DL5BA0A0G2JN68 375 aa7.48□□□□□ -1.21
CD44-207ENST00000425428 KIR2DL5BA0A0G2JPC4 375 aa7.48□□□□□ -1.21
CD44-207ENST00000425428 TRBV6-1A0A0K0K1D8 114 aa7.48□□□□□ -1.21
CD44-207ENST00000425428 UBE2CO00762 179 aa7.48□□□□□ -1.21
CD44-207ENST00000425428 IGHV4-30-4P0DP06 118 aa7.48□□□□□ -1.21
CD44-207ENST00000425428 KIR2DL5AQ8N109 375 aa7.48□□□□□ -1.21
CD44-207ENST00000425428 KIR2DL5BQ8NHK3 375 aa7.48□□□□□ -1.21
CD44-207ENST00000425428 DAZAP1Q96EP5 407 aaKnown RBP7.48□□□□□ -1.21
CD44-207ENST00000425428 SMIM12Q96EX1 92 aa7.48□□□□□ -1.21
CD44-207ENST00000425428 VGLL1Q99990 258 aa7.48□□□□□ -1.21
CD44-207ENST00000425428 TMEM208Q9BTX3 173 aa7.48□□□□□ -1.21
CD44-207ENST00000425428 AGPAT4-IT1Q9H0P7 198 aa7.48□□□□□ -1.21
CD44-207ENST00000425428 CSTL1Q9H114 145 aa7.48□□□□□ -1.21
CD44-207ENST00000425428 TRAV34A0A0B4J273 112 aa7.47□□□□□ -1.21
CD44-207ENST00000425428 INSP01308 110 aa7.47□□□□□ -1.21
CD44-207ENST00000425428 SRP19P09132 144 aaKnown RBP7.47□□□□□ -1.21
CD44-207ENST00000425428 ZNF124Q15973 351 aa7.47□□□□□ -1.21
CD44-207ENST00000425428 GDF5OSQ5U4N7 250 aa7.47□□□□□ -1.21
CD44-207ENST00000425428 TRPT1Q86TN4 253 aaKnown RBP7.47□□□□□ -1.21
CD44-207ENST00000425428 Q8N1Y9 231 aa7.47□□□□□ -1.21
CD44-207ENST00000425428 C2CD4CQ8TF44 421 aa7.47□□□□□ -1.21
CD44-207ENST00000425428 SGK494Q96LW2 274 aa7.47□□□□□ -1.21
CD44-207ENST00000425428 NIPSNAP3BQ9BS92 247 aa7.47□□□□□ -1.21
CD44-207ENST00000425428 WFDC10AQ9H1F0 79 aa7.47□□□□□ -1.21
CD44-207ENST00000425428 PARLQ9H300 379 aa7.47□□□□□ -1.21
CD44-207ENST00000425428 C19orf73Q9NVV2 129 aa7.47□□□□□ -1.21
CD44-207ENST00000425428 AURKAIP1Q9NWT8 199 aaPredicted RBP7.47□□□□□ -1.21
CD44-207ENST00000425428 KLF12Q9Y4X4 402 aa7.47□□□□□ -1.21
CD44-207ENST00000425428 TRAV8-1A0A0A6YYK1 113 aa7.46□□□□□ -1.21
CD44-207ENST00000425428 CA1P00915 261 aaPredicted RBP7.46□□□□□ -1.21
CD44-207ENST00000425428 SFTA3P0C7M3 94 aa7.46□□□□□ -1.21
CD44-207ENST00000425428 MGST1P10620 155 aaKnown RBP7.46□□□□□ -1.21
CD44-207ENST00000425428 DEFB1P60022 68 aa7.46□□□□□ -1.21
CD44-207ENST00000425428 Q86TA4 180 aa7.46□□□□□ -1.21
CD44-207ENST00000425428 EIF4E3Q8N5X7 224 aaKnown RBP7.46□□□□□ -1.21
CD44-207ENST00000425428 CITED4Q96RK1 184 aa7.46□□□□□ -1.21
CD44-207ENST00000425428 ASCL2Q99929 193 aa7.46□□□□□ -1.21
CD44-207ENST00000425428 GOLT1BQ9Y3E0 138 aa7.46□□□□□ -1.21
CD44-207ENST00000425428 A8MZ25 164 aa7.46□□□□□ -1.22
CD44-207ENST00000425428 F8W036 122 aa7.46□□□□□ -1.22
CD44-207ENST00000425428 J3KRW8 73 aa7.46□□□□□ -1.22
CD44-207ENST00000425428 SPINK13Q1W4C9 94 aa7.46□□□□□ -1.22
CD44-207ENST00000425428 TMEM241Q24JQ0 296 aa7.46□□□□□ -1.22
CD44-207ENST00000425428 CENPWQ5EE01 88 aa7.46□□□□□ -1.22
CD44-207ENST00000425428 TMEM183AQ8IXX5 376 aa7.46□□□□□ -1.22
CD44-207ENST00000425428 Q8TAT8 98 aa7.46□□□□□ -1.22
CD44-207ENST00000425428 MRAPQ8TCY5 172 aa7.46□□□□□ -1.22
CD44-207ENST00000425428 LINC00479Q96M42 142 aa7.46□□□□□ -1.22
CD44-207ENST00000425428 C20orf144Q9BQM9 153 aa7.46□□□□□ -1.22
CD44-207ENST00000425428 MGAM2Q2M2H8 2515 aa7.45□□□□□ -1.22
CD44-207ENST00000425428 PKD1L1Q8TDX9 2849 aa7.45□□□□□ -1.22
CD44-207ENST00000425428 TRAV21A0A0B4J279 112 aa7.45□□□□□ -1.22
CD44-207ENST00000425428 C9JCJ5 164 aa7.45□□□□□ -1.22
CD44-207ENST00000425428 LTAP01374 205 aa7.45□□□□□ -1.22
CD44-207ENST00000425428 PRB4P10163 310 aaPredicted RBP7.45□□□□□ -1.22
CD44-207ENST00000425428 CRISP2P16562 243 aa7.45□□□□□ -1.22
CD44-207ENST00000425428 RNASE4P34096 147 aaKnown RBP7.45□□□□□ -1.22
CD44-207ENST00000425428 TMEM256Q8N2U0 113 aa7.45□□□□□ -1.22
CD44-207ENST00000425428 NAT8Q9UHE5 227 aa7.45□□□□□ -1.22
CD44-207ENST00000425428 LY96Q9Y6Y9 160 aa7.45□□□□□ -1.22
CD44-207ENST00000425428 C7orf71A4D174 169 aa7.44□□□□□ -1.22
CD44-207ENST00000425428 FABP5P3A8MUU1 101 aa7.44□□□□□ -1.22
CD44-207ENST00000425428 FXYD7P58549 80 aa7.44□□□□□ -1.22
CD44-207ENST00000425428 FAM162BQ5T6X4 162 aa7.44□□□□□ -1.22
CD44-207ENST00000425428 IGF2BP2-AS1Q96M15 143 aa7.44□□□□□ -1.22
CD44-207ENST00000425428 XCL2Q9UBD3 114 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms