RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 CMTM2Q8TAZ6 248 aa6.95□□□□□ -1.3
USP4-202ENST00000351842 MS4A6AQ9H2W1 248 aa6.95□□□□□ -1.3
USP4-202ENST00000351842 SMAD5-AS1Q9Y6J3 95 aa6.95□□□□□ -1.3
USP4-202ENST00000351842 IGKV2-40A0A087WW87 121 aaPredicted RBP6.95□□□□□ -1.3
USP4-202ENST00000351842 G3V4G9 280 aa6.95□□□□□ -1.3
USP4-202ENST00000351842 IGKV2D-40P01614 121 aaPredicted RBP6.95□□□□□ -1.3
USP4-202ENST00000351842 CSN3P07498 182 aa6.95□□□□□ -1.3
USP4-202ENST00000351842 STAG3L2P0CL84 134 aa6.95□□□□□ -1.3
USP4-202ENST00000351842 STAG3L3P0CL85 134 aa6.95□□□□□ -1.3
USP4-202ENST00000351842 CRYBB3P26998 211 aa6.95□□□□□ -1.3
USP4-202ENST00000351842 PDZD11Q5EBL8 140 aa6.95□□□□□ -1.3
USP4-202ENST00000351842 LINC00482Q8N8I6 264 aa6.95□□□□□ -1.3
USP4-202ENST00000351842 Q8TAT8 98 aa6.95□□□□□ -1.3
USP4-202ENST00000351842 ZNF580Q9UK33 172 aa6.95□□□□□ -1.3
USP4-202ENST00000351842 PGPEP1LA6NFU8 196 aa6.95□□□□□ -1.3
USP4-202ENST00000351842 C11orf94C9JXX5 98 aa6.95□□□□□ -1.3
USP4-202ENST00000351842 M0R143 59 aa6.95□□□□□ -1.3
USP4-202ENST00000351842 BMI1P35226 326 aa6.95□□□□□ -1.3
USP4-202ENST00000351842 MYCNOSP40205 109 aa6.95□□□□□ -1.3
USP4-202ENST00000351842 CDKN1BP46527 198 aa6.95□□□□□ -1.3
USP4-202ENST00000351842 DEFB131AP59861 70 aa6.95□□□□□ -1.3
USP4-202ENST00000351842 GOLT1AQ6ZVE7 132 aa6.95□□□□□ -1.3
USP4-202ENST00000351842 CYB561D1Q8N8Q1 229 aa6.95□□□□□ -1.3
USP4-202ENST00000351842 DERL1Q9BUN8 251 aa6.95□□□□□ -1.3
USP4-202ENST00000351842 ZNF747Q9BV97 191 aa6.95□□□□□ -1.3
USP4-202ENST00000351842 KNCNA6PVL3 124 aa6.94□□□□□ -1.3
USP4-202ENST00000351842 BCL2P10415 239 aa6.94□□□□□ -1.3
USP4-202ENST00000351842 ACTL10Q5JWF8 245 aa6.94□□□□□ -1.3
USP4-202ENST00000351842 FXYD5Q96DB9 178 aa6.94□□□□□ -1.3
USP4-202ENST00000351842 CLUHP3Q96NS8 147 aa6.94□□□□□ -1.3
USP4-202ENST00000351842 PYGO2Q9BRQ0 406 aa6.94□□□□□ -1.3
USP4-202ENST00000351842 Q9H3A6 140 aa6.94□□□□□ -1.3
USP4-202ENST00000351842 TRBV24-1A0A075B6N3 115 aa6.94□□□□□ -1.3
USP4-202ENST00000351842 PRAC2D3DTV9 90 aa6.94□□□□□ -1.3
USP4-202ENST00000351842 GP9P14770 177 aa6.94□□□□□ -1.3
USP4-202ENST00000351842 PSMB3P49720 205 aa6.94□□□□□ -1.3
USP4-202ENST00000351842 HIST1H1AQ02539 215 aaPredicted RBP6.94□□□□□ -1.3
USP4-202ENST00000351842 ERCC8Q13216 396 aa6.94□□□□□ -1.3
USP4-202ENST00000351842 PQLC2Q6ZP29 291 aa6.94□□□□□ -1.3
USP4-202ENST00000351842 NRN1Q9NPD7 142 aa6.94□□□□□ -1.3
USP4-202ENST00000351842 SCO2A0A1W2PP80 73 aa6.93□□□□□ -1.3
USP4-202ENST00000351842 GGTLC3B5MD39 225 aa6.93□□□□□ -1.3
USP4-202ENST00000351842 CXCL1P09341 107 aa6.93□□□□□ -1.3
USP4-202ENST00000351842 RPL35AP18077 110 aaKnown RBP6.93□□□□□ -1.3
USP4-202ENST00000351842 TAGLN2P37802 199 aaKnown RBP6.93□□□□□ -1.3
USP4-202ENST00000351842 FHL3Q13643 280 aa6.93□□□□□ -1.3
USP4-202ENST00000351842 ZNF664Q8N3J9 261 aa6.93□□□□□ -1.3
USP4-202ENST00000351842 NIPSNAP3BQ9BS92 247 aa6.93□□□□□ -1.3
USP4-202ENST00000351842 CTDSP1Q9GZU7 261 aa6.93□□□□□ -1.3
USP4-202ENST00000351842 AAMDCQ9H7C9 122 aa6.93□□□□□ -1.3
USP4-202ENST00000351842 SDF2L1Q9HCN8 221 aa6.93□□□□□ -1.3
USP4-202ENST00000351842 IGHV3OR16-12A0A075B7B8 117 aa6.93□□□□□ -1.3
USP4-202ENST00000351842 PAFAH1B2P68402 229 aa6.93□□□□□ -1.3
USP4-202ENST00000351842 RNF151Q2KHN1 245 aa6.93□□□□□ -1.3
USP4-202ENST00000351842 DEFB114Q30KQ6 69 aa6.93□□□□□ -1.3
USP4-202ENST00000351842 PRR27Q6MZM9 219 aa6.93□□□□□ -1.3
USP4-202ENST00000351842 MRPL32Q9BYC8 188 aaKnown RBP6.93□□□□□ -1.3
USP4-202ENST00000351842 RNF24Q9Y225 148 aa6.93□□□□□ -1.3
USP4-202ENST00000351842 CBY3A6NI87 242 aa6.93□□□□□ -1.3
USP4-202ENST00000351842 HIST1H1EP10412 219 aaKnown RBP6.93□□□□□ -1.3
USP4-202ENST00000351842 GDF5OSQ5U4N7 250 aa6.93□□□□□ -1.3
USP4-202ENST00000351842 SMIM15Q7Z3B0 74 aa6.93□□□□□ -1.3
USP4-202ENST00000351842 NUDT10Q8NFP7 164 aa6.93□□□□□ -1.3
USP4-202ENST00000351842 ANK2Q01484 3957 aa6.92□□□□□ -1.3
USP4-202ENST00000351842 TMEM238C9JI98 176 aa6.92□□□□□ -1.3
USP4-202ENST00000351842 NDUFB4O95168 129 aa6.92□□□□□ -1.3
USP4-202ENST00000351842 FABP4P15090 132 aa6.92□□□□□ -1.3
USP4-202ENST00000351842 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa6.92□□□□□ -1.3
USP4-202ENST00000351842 S100A7AQ86SG5 101 aa6.92□□□□□ -1.3
USP4-202ENST00000351842 C20orf173Q96LM9 149 aa6.92□□□□□ -1.3
USP4-202ENST00000351842 VAX2Q9UIW0 290 aa6.92□□□□□ -1.3
USP4-202ENST00000351842 TENM3Q9P273 2699 aa6.92□□□□□ -1.3
USP4-202ENST00000351842 GFI1BQ5VTD9 330 aa6.92□□□□□ -1.3
USP4-202ENST00000351842 MRAPQ8TCY5 172 aa6.92□□□□□ -1.3
USP4-202ENST00000351842 TRBV19A0A075B6N1 114 aa6.91□□□□□ -1.3
USP4-202ENST00000351842 HELTA6NFD8 242 aa6.91□□□□□ -1.3
USP4-202ENST00000351842 TMEM250H0YL14 139 aa6.91□□□□□ -1.3
USP4-202ENST00000351842 PPP1R2P9O14990 202 aa6.91□□□□□ -1.3
USP4-202ENST00000351842 HIST1H2BKO60814 126 aa6.91□□□□□ -1.3
USP4-202ENST00000351842 BRI3O95415 125 aa6.91□□□□□ -1.3
USP4-202ENST00000351842 HIST1H2BJP06899 126 aa6.91□□□□□ -1.3
USP4-202ENST00000351842 HIST1H2BOP23527 126 aa6.91□□□□□ -1.3
USP4-202ENST00000351842 HIST1H2BBP33778 126 aa6.91□□□□□ -1.3
USP4-202ENST00000351842 HIST1H2BDP58876 126 aa6.91□□□□□ -1.3
USP4-202ENST00000351842 PLP1P60201 277 aa6.91□□□□□ -1.3
USP4-202ENST00000351842 HIST1H2BCP62807 126 aa6.91□□□□□ -1.3
USP4-202ENST00000351842 HIST2H2BEQ16778 126 aa6.91□□□□□ -1.3
USP4-202ENST00000351842 DEFB121Q5J5C9 76 aa6.91□□□□□ -1.3
USP4-202ENST00000351842 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.91□□□□□ -1.3
USP4-202ENST00000351842 PRNTQ86SH4 94 aa6.91□□□□□ -1.3
USP4-202ENST00000351842 HIST1H2BHQ93079 126 aa6.91□□□□□ -1.3
USP4-202ENST00000351842 HIST1H2BNQ99877 126 aa6.91□□□□□ -1.3
USP4-202ENST00000351842 HIST1H2BMQ99879 126 aa6.91□□□□□ -1.3
USP4-202ENST00000351842 MGST1P10620 155 aaKnown RBP6.91□□□□□ -1.3
USP4-202ENST00000351842 RPS10P46783 165 aaKnown RBP6.91□□□□□ -1.3
USP4-202ENST00000351842 DEFB125Q8N687 156 aa6.91□□□□□ -1.3
USP4-202ENST00000351842 TMEM167BQ9NRX6 74 aa6.91□□□□□ -1.3
USP4-202ENST00000351842 STAB2Q8WWQ8 2551 aa6.91□□□□□ -1.3
USP4-202ENST00000351842 TRAV12-2A0A075B6T6 113 aa6.91□□□□□ -1.3
USP4-202ENST00000351842 ZNF727A8MUV8 499 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 89.6 ms