RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 NEGR1Q7Z3B1 354 aa17.48■□□□□ 0.39
TRIM28-202ENST00000341753 NPFFR1Q9GZQ6 430 aa17.48■□□□□ 0.39
TRIM28-202ENST00000341753 ARHGAP32A7KAX9 2087 aa17.47■□□□□ 0.39
TRIM28-202ENST00000341753 K7ENP7 123 aa17.47■□□□□ 0.39
TRIM28-202ENST00000341753 GATA1P15976 413 aaPredicted RBP17.47■□□□□ 0.39
TRIM28-202ENST00000341753 RPL24P83731 157 aaKnown RBP17.47■□□□□ 0.39
TRIM28-202ENST00000341753 FBLL1A6NHQ2 334 aaKnown RBP17.46■□□□□ 0.39
TRIM28-202ENST00000341753 LY6HO94772 140 aa17.46■□□□□ 0.39
TRIM28-202ENST00000341753 LEPP41159 167 aa17.46■□□□□ 0.39
TRIM28-202ENST00000341753 PRR25Q96S07 402 aa17.46■□□□□ 0.39
TRIM28-202ENST00000341753 COL25A1Q9BXS0 654 aaPredicted RBP17.46■□□□□ 0.39
TRIM28-202ENST00000341753 IGHV3-35A0A0C4DH35 117 aa17.46■□□□□ 0.39
TRIM28-202ENST00000341753 FABP2P12104 132 aa17.46■□□□□ 0.39
TRIM28-202ENST00000341753 SAMD5Q5TGI4 173 aa17.46■□□□□ 0.39
TRIM28-202ENST00000341753 SIVA1O15304 175 aa17.45■□□□□ 0.38
TRIM28-202ENST00000341753 CDSNQ15517 529 aa17.45■□□□□ 0.38
TRIM28-202ENST00000341753 GOSR1O95249 250 aa17.45■□□□□ 0.38
TRIM28-202ENST00000341753 ORM1P02763 201 aa17.45■□□□□ 0.38
TRIM28-202ENST00000341753 PPIAL4CA0A0B4J2A2 164 aa17.44■□□□□ 0.38
TRIM28-202ENST00000341753 PPIAL4GP0DN37 164 aa17.44■□□□□ 0.38
TRIM28-202ENST00000341753 TNFRSF14Q92956 283 aa17.44■□□□□ 0.38
TRIM28-202ENST00000341753 ONECUT1Q9UBC0 465 aa17.44■□□□□ 0.38
TRIM28-202ENST00000341753 HRNRQ86YZ3 2850 aaPredicted RBP17.44■□□□□ 0.38
TRIM28-202ENST00000341753 PRSS1P07477 247 aa17.44■□□□□ 0.38
TRIM28-202ENST00000341753 GTSCR1Q86UQ5 136 aa17.44■□□□□ 0.38
TRIM28-202ENST00000341753 SMIM13P0DJ93 91 aa17.43■□□□□ 0.38
TRIM28-202ENST00000341753 ZNF575Q86XF7 245 aa17.43■□□□□ 0.38
TRIM28-202ENST00000341753 RNF185Q96GF1 192 aa17.43■□□□□ 0.38
TRIM28-202ENST00000341753 HES1Q14469 280 aa17.42■□□□□ 0.38
TRIM28-202ENST00000341753 ODF1Q14990 250 aa17.42■□□□□ 0.38
TRIM28-202ENST00000341753 MAP1LC3AQ9H492 121 aa17.42■□□□□ 0.38
TRIM28-202ENST00000341753 MED13LQ71F56 2210 aa17.42■□□□□ 0.38
TRIM28-202ENST00000341753 CHD8Q9HCK8 2581 aa17.41■□□□□ 0.38
TRIM28-202ENST00000341753 VSTM5A8MXK1 200 aa17.41■□□□□ 0.38
TRIM28-202ENST00000341753 OR5A1Q8NGJ0 315 aa17.41■□□□□ 0.38
TRIM28-202ENST00000341753 CHAC1Q9BUX1 264 aa17.41■□□□□ 0.38
TRIM28-202ENST00000341753 WNK2Q9Y3S1 2297 aa17.41■□□□□ 0.38
TRIM28-202ENST00000341753 TEX48A0A1B0GUV7 120 aa17.41■□□□□ 0.38
TRIM28-202ENST00000341753 ZNF207O43670 478 aaKnown RBP17.41■□□□□ 0.38
TRIM28-202ENST00000341753 ERCC8Q13216 396 aa17.41■□□□□ 0.38
TRIM28-202ENST00000341753 FOXC2Q99958 501 aa17.41■□□□□ 0.38
TRIM28-202ENST00000341753 HHLA3Q9XRX5 114 aa17.41■□□□□ 0.38
TRIM28-202ENST00000341753 CD3EP07766 207 aa17.41■□□□□ 0.38
TRIM28-202ENST00000341753 ZNF562Q6V9R5 426 aa17.41■□□□□ 0.38
TRIM28-202ENST00000341753 PDE6HQ13956 83 aa17.4■□□□□ 0.38
TRIM28-202ENST00000341753 NHP2Q9NX24 153 aaKnown RBP17.4■□□□□ 0.38
TRIM28-202ENST00000341753 SPTBN1Q01082 2364 aaKnown RBP17.4■□□□□ 0.38
TRIM28-202ENST00000341753 F8W735 103 aaPredicted RBP17.4■□□□□ 0.38
TRIM28-202ENST00000341753 IGLC6P0CF74 106 aa17.4■□□□□ 0.38
TRIM28-202ENST00000341753 FANCD2OSQ96PS1 177 aa17.4■□□□□ 0.38
TRIM28-202ENST00000341753 NCOR2Q9Y618 2525 aa17.39■□□□□ 0.37
TRIM28-202ENST00000341753 NBR2O15453 112 aa17.39■□□□□ 0.37
TRIM28-202ENST00000341753 TNFRSF6BO95407 300 aa17.39■□□□□ 0.37
TRIM28-202ENST00000341753 KLRD1Q13241 179 aa17.39■□□□□ 0.37
TRIM28-202ENST00000341753 VKORC1Q9BQB6 163 aa17.39■□□□□ 0.37
TRIM28-202ENST00000341753 RAXQ9Y2V3 346 aa17.39■□□□□ 0.37
TRIM28-202ENST00000341753 LY6LH3BQJ8 138 aa17.38■□□□□ 0.37
TRIM28-202ENST00000341753 TMEM158Q8WZ71 300 aa17.38■□□□□ 0.37
TRIM28-202ENST00000341753 SMAD5-AS1Q9Y6J3 95 aa17.38■□□□□ 0.37
TRIM28-202ENST00000341753 IGHG4P01861 327 aa17.38■□□□□ 0.37
TRIM28-202ENST00000341753 MFAP4P55083 255 aa17.38■□□□□ 0.37
TRIM28-202ENST00000341753 ZC2HC1BQ5TFG8 222 aa17.37■□□□□ 0.37
TRIM28-202ENST00000341753 TRBV25-1A0A075B6N4 114 aa17.37■□□□□ 0.37
TRIM28-202ENST00000341753 IGKCP01834 107 aa17.37■□□□□ 0.37
TRIM28-202ENST00000341753 RAB1BQ9H0U4 201 aa17.37■□□□□ 0.37
TRIM28-202ENST00000341753 TMEM160Q9NX00 188 aa17.37■□□□□ 0.37
TRIM28-202ENST00000341753 PRAC2D3DTV9 90 aa17.36■□□□□ 0.37
TRIM28-202ENST00000341753 FCER1GP30273 86 aa17.36■□□□□ 0.37
TRIM28-202ENST00000341753 NDPQ00604 133 aa17.36■□□□□ 0.37
TRIM28-202ENST00000341753 BMI1P35226 326 aa17.36■□□□□ 0.37
TRIM28-202ENST00000341753 TMEM8BA6NDV4 472 aa17.35■□□□□ 0.37
TRIM28-202ENST00000341753 CCL21O00585 134 aa17.35■□□□□ 0.37
TRIM28-202ENST00000341753 C21orf62Q9NYP8 219 aa17.35■□□□□ 0.37
TRIM28-202ENST00000341753 AKAP6Q13023 2319 aa17.35■□□□□ 0.37
TRIM28-202ENST00000341753 B9A039 149 aa17.35■□□□□ 0.37
TRIM28-202ENST00000341753 DYNAPQ8N1N2 210 aa17.35■□□□□ 0.37
TRIM28-202ENST00000341753 RNF182Q8N6D2 247 aa17.35■□□□□ 0.37
TRIM28-202ENST00000341753 IGLV11-55A0A075B6I3 123 aa17.34■□□□□ 0.37
TRIM28-202ENST00000341753 RPL7P18124 248 aaKnown RBP17.34■□□□□ 0.37
TRIM28-202ENST00000341753 TRAV40A0A0B4J280 105 aa17.34■□□□□ 0.37
TRIM28-202ENST00000341753 SRSF8Q9BRL6 282 aaKnown RBP17.34■□□□□ 0.37
TRIM28-202ENST00000341753 GTSF1LQ9H1H1 148 aa17.34■□□□□ 0.37
TRIM28-202ENST00000341753 ZMAT4Q9H898 229 aa17.34■□□□□ 0.37
TRIM28-202ENST00000341753 CACNA1BQ00975 2339 aa17.34■□□□□ 0.37
TRIM28-202ENST00000341753 TRAV26-2A0A0B4J265 109 aa17.34■□□□□ 0.37
TRIM28-202ENST00000341753 IGHV3-66A0A0C4DH42 116 aa17.34■□□□□ 0.37
TRIM28-202ENST00000341753 NCBP2LA6PVI3 153 aaKnown RBP17.34■□□□□ 0.37
TRIM28-202ENST00000341753 MTURNQ8N3F0 131 aa17.34■□□□□ 0.37
TRIM28-202ENST00000341753 MAPKAPK5-AS1Q8N8E1 139 aa17.34■□□□□ 0.37
TRIM28-202ENST00000341753 TRGV3P03979 118 aa17.33■□□□□ 0.36
TRIM28-202ENST00000341753 PHLDA1Q8WV24 401 aaPredicted RBP17.33■□□□□ 0.36
TRIM28-202ENST00000341753 COL12A1Q99715 3063 aa17.33■□□□□ 0.36
TRIM28-202ENST00000341753 DTX2Q86UW9 622 aa17.33■□□□□ 0.36
TRIM28-202ENST00000341753 RNF5Q99942 180 aa17.33■□□□□ 0.36
TRIM28-202ENST00000341753 IGHV3OR16-13A0A075B7E8 117 aa17.32■□□□□ 0.36
TRIM28-202ENST00000341753 IGHV3-74A0A0B4J1X5 117 aa17.32■□□□□ 0.36
TRIM28-202ENST00000341753 IL17RELQ6ZVW7 336 aa17.32■□□□□ 0.36
TRIM28-202ENST00000341753 MRPL35Q9NZE8 188 aaKnown RBP17.32■□□□□ 0.36
TRIM28-202ENST00000341753 CFHR4Q92496 578 aa17.32■□□□□ 0.36
TRIM28-202ENST00000341753 DPM2O94777 84 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms