RNA–Protein interactions for RNA: ENST00000340477.9

SYNE4-202, Transcript of spectrin repeat containing nuclear envelope family member 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE4, Length 1,004 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4-202ENST00000340477 STAG3L3P0CL85 134 aa13.78□□□□□ -0.2
SYNE4-202ENST00000340477 HTN1P15515 57 aa13.78□□□□□ -0.2
SYNE4-202ENST00000340477 GFI1BQ5VTD9 330 aa13.78□□□□□ -0.2
SYNE4-202ENST00000340477 C9orf47Q6ZRZ4 202 aa13.78□□□□□ -0.2
SYNE4-202ENST00000340477 Q6ZTC4 211 aa13.78□□□□□ -0.2
SYNE4-202ENST00000340477 IQCF2Q8IXL9 164 aa13.78□□□□□ -0.2
SYNE4-202ENST00000340477 KCNRGQ8N5I3 272 aa13.78□□□□□ -0.2
SYNE4-202ENST00000340477 HYLS1Q96M11 299 aa13.78□□□□□ -0.2
SYNE4-202ENST00000340477 RBAKDNA6NC62 111 aa13.77□□□□□ -0.21
SYNE4-202ENST00000340477 CXorf1O96002 111 aa13.77□□□□□ -0.21
SYNE4-202ENST00000340477 CCDC28AQ8IWP9 274 aa13.77□□□□□ -0.21
SYNE4-202ENST00000340477 C16orf74Q96GX8 76 aa13.77□□□□□ -0.21
SYNE4-202ENST00000340477 AGPAT4-IT1Q9H0P7 198 aa13.77□□□□□ -0.21
SYNE4-202ENST00000340477 TMEM167BQ9NRX6 74 aa13.77□□□□□ -0.21
SYNE4-202ENST00000340477 KMT2CQ8NEZ4 4911 aaKnown RBP13.76□□□□□ -0.21
SYNE4-202ENST00000340477 PFDN1O60925 122 aa13.76□□□□□ -0.21
SYNE4-202ENST00000340477 ZNF138P52744 262 aa13.76□□□□□ -0.21
SYNE4-202ENST00000340477 EIF5AP63241 154 aaKnown RBP13.76□□□□□ -0.21
SYNE4-202ENST00000340477 C12orf74Q32Q52 190 aa13.76□□□□□ -0.21
SYNE4-202ENST00000340477 FAM222AQ5U5X8 452 aa13.76□□□□□ -0.21
SYNE4-202ENST00000340477 DKK2Q9UBU2 259 aa13.76□□□□□ -0.21
SYNE4-202ENST00000340477 RPH3ALQ9UNE2 315 aa13.76□□□□□ -0.21
SYNE4-202ENST00000340477 TRAV12-3A0A0B4J271 114 aa13.75□□□□□ -0.21
SYNE4-202ENST00000340477 CTXND1A0A1B0GTU2 59 aa13.75□□□□□ -0.21
SYNE4-202ENST00000340477 C7orf71A4D174 169 aa13.75□□□□□ -0.21
SYNE4-202ENST00000340477 PGPA6NDG6 321 aa13.75□□□□□ -0.21
SYNE4-202ENST00000340477 GPX1P07203 203 aa13.75□□□□□ -0.21
SYNE4-202ENST00000340477 NMBP08949 121 aa13.75□□□□□ -0.21
SYNE4-202ENST00000340477 GCHFRP30047 84 aa13.75□□□□□ -0.21
SYNE4-202ENST00000340477 ZNF493Q6ZR52 646 aa13.75□□□□□ -0.21
SYNE4-202ENST00000340477 ZNF767PQ75MW2 155 aa13.75□□□□□ -0.21
SYNE4-202ENST00000340477 VGLL1Q99990 258 aa13.75□□□□□ -0.21
SYNE4-202ENST00000340477 LYRM9A8MSI8 78 aa13.74□□□□□ -0.21
SYNE4-202ENST00000340477 DIRC3C9JPN6 131 aa13.74□□□□□ -0.21
SYNE4-202ENST00000340477 BCL2L11O43521 198 aa13.74□□□□□ -0.21
SYNE4-202ENST00000340477 TCTAP57738 103 aa13.74□□□□□ -0.21
SYNE4-202ENST00000340477 DAD1P61803 113 aa13.74□□□□□ -0.21
SYNE4-202ENST00000340477 KIR3DS1Q14943 382 aa13.74□□□□□ -0.21
SYNE4-202ENST00000340477 ARL6IP6Q8N6S5 226 aa13.74□□□□□ -0.21
SYNE4-202ENST00000340477 TMEM263Q8WUH6 116 aaKnown RBP13.74□□□□□ -0.21
SYNE4-202ENST00000340477 PYGO2Q9BRQ0 406 aa13.74□□□□□ -0.21
SYNE4-202ENST00000340477 ZNF471Q9BX82 626 aaPredicted RBP13.74□□□□□ -0.21
SYNE4-202ENST00000340477 CYTL1Q9NRR1 136 aa13.74□□□□□ -0.21
SYNE4-202ENST00000340477 ZNF492Q9P255 531 aa13.74□□□□□ -0.21
SYNE4-202ENST00000340477 DEFB131BA0A096LNP1 70 aa13.73□□□□□ -0.21
SYNE4-202ENST00000340477 TRBV7-9A0A0J9YWB2 115 aa13.73□□□□□ -0.21
SYNE4-202ENST00000340477 CRISP2P16562 243 aa13.73□□□□□ -0.21
SYNE4-202ENST00000340477 Q6ZNX1 250 aa13.73□□□□□ -0.21
SYNE4-202ENST00000340477 OR11H4Q8NGC9 324 aa13.73□□□□□ -0.21
SYNE4-202ENST00000340477 DYNC2H1Q8NCM8 4307 aaKnown RBP13.72□□□□□ -0.21
SYNE4-202ENST00000340477 KLLNB2CW77 178 aa13.72□□□□□ -0.21
SYNE4-202ENST00000340477 IGLL5B9A064 214 aa13.72□□□□□ -0.21
SYNE4-202ENST00000340477 K7EQM0 130 aa13.72□□□□□ -0.21
SYNE4-202ENST00000340477 RNASE4P34096 147 aaKnown RBP13.72□□□□□ -0.21
SYNE4-202ENST00000340477 Q8TAT8 98 aa13.72□□□□□ -0.21
SYNE4-202ENST00000340477 ST6GAL2Q96JF0 529 aa13.72□□□□□ -0.21
SYNE4-202ENST00000340477 FAM19A4Q96LR4 140 aa13.72□□□□□ -0.21
SYNE4-202ENST00000340477 SERTM2A0A1B0GWG4 89 aa13.71□□□□□ -0.21
SYNE4-202ENST00000340477 BTN1A1Q13410 526 aa13.71□□□□□ -0.21
SYNE4-202ENST00000340477 GOLT1AQ6ZVE7 132 aa13.71□□□□□ -0.21
SYNE4-202ENST00000340477 TCTE3Q8IZS6 198 aa13.71□□□□□ -0.21
SYNE4-202ENST00000340477 C5orf17Q8NAS9 161 aa13.71□□□□□ -0.21
SYNE4-202ENST00000340477 TMED6Q8WW62 240 aa13.71□□□□□ -0.21
SYNE4-202ENST00000340477 TIMM8BQ9Y5J9 83 aaPredicted RBP13.71□□□□□ -0.21
SYNE4-202ENST00000340477 LENEPQ9Y5L5 61 aa13.71□□□□□ -0.21
SYNE4-202ENST00000340477 LYSTQ99698 3801 aa13.71□□□□□ -0.22
SYNE4-202ENST00000340477 SNURFLB1AK76 121 aa13.7□□□□□ -0.22
SYNE4-202ENST00000340477 PRM2P04554 102 aa13.7□□□□□ -0.22
SYNE4-202ENST00000340477 AZU1P20160 251 aa13.7□□□□□ -0.22
SYNE4-202ENST00000340477 ZNF680Q8NEM1 530 aa13.7□□□□□ -0.22
SYNE4-202ENST00000340477 STOML3Q8TAV4 291 aa13.7□□□□□ -0.22
SYNE4-202ENST00000340477 SUN5Q8TC36 379 aa13.7□□□□□ -0.22
SYNE4-202ENST00000340477 MAP1LC3B2A6NCE7 125 aa13.69□□□□□ -0.22
SYNE4-202ENST00000340477 UMAD1C9J7I0 102 aa13.69□□□□□ -0.22
SYNE4-202ENST00000340477 RGS13O14921 159 aa13.69□□□□□ -0.22
SYNE4-202ENST00000340477 SEC11BP0C7V7 166 aa13.69□□□□□ -0.22
SYNE4-202ENST00000340477 TPT1P13693 172 aaKnown RBP13.69□□□□□ -0.22
SYNE4-202ENST00000340477 CD300CQ08708 224 aa13.69□□□□□ -0.22
SYNE4-202ENST00000340477 TMUB2Q71RG4 321 aa13.69□□□□□ -0.22
SYNE4-202ENST00000340477 SSX7Q7RTT5 188 aa13.69□□□□□ -0.22
SYNE4-202ENST00000340477 AKAP14Q86UN6 197 aa13.69□□□□□ -0.22
SYNE4-202ENST00000340477 ZFAND2AQ8N6M9 145 aa13.69□□□□□ -0.22
SYNE4-202ENST00000340477 RNASE8Q8TDE3 154 aaKnown RBP13.69□□□□□ -0.22
SYNE4-202ENST00000340477 LINC00476Q8WZB0 136 aa13.69□□□□□ -0.22
SYNE4-202ENST00000340477 NDFIP1Q9BT67 221 aa13.69□□□□□ -0.22
SYNE4-202ENST00000340477 MAP1LC3BQ9GZQ8 125 aa13.69□□□□□ -0.22
SYNE4-202ENST00000340477 hCG_2014768A0A024R1R8 64 aa13.68□□□□□ -0.22
SYNE4-202ENST00000340477 CBY3A6NI87 242 aa13.68□□□□□ -0.22
SYNE4-202ENST00000340477 LY6G6CO95867 125 aa13.68□□□□□ -0.22
SYNE4-202ENST00000340477 DEFB130BP0DP73 79 aa13.68□□□□□ -0.22
SYNE4-202ENST00000340477 DEFB130AP0DP74 79 aa13.68□□□□□ -0.22
SYNE4-202ENST00000340477 HTN3P15516 51 aa13.68□□□□□ -0.22
SYNE4-202ENST00000340477 GNG5P63218 68 aa13.68□□□□□ -0.22
SYNE4-202ENST00000340477 EIF4E3Q8N5X7 224 aaKnown RBP13.68□□□□□ -0.22
SYNE4-202ENST00000340477 IGHV4-4A0A075B6R2 117 aa13.67□□□□□ -0.22
SYNE4-202ENST00000340477 A0A1W2PRE2 83 aa13.67□□□□□ -0.22
SYNE4-202ENST00000340477 ZNF726P1Q15940 193 aa13.67□□□□□ -0.22
SYNE4-202ENST00000340477 LINC00467Q9BRT7 94 aa13.67□□□□□ -0.22
SYNE4-202ENST00000340477 NKX6-2Q9C056 277 aaPredicted RBP13.67□□□□□ -0.22
SYNE4-202ENST00000340477 ALMS1Q8TCU4 4167 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms