RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 TCF24Q7RTU0 167 aa10.16□□□□□ -0.78
HMGB1-202ENST00000339872 ZNF738Q8NE65 137 aa10.16□□□□□ -0.78
HMGB1-202ENST00000339872 C4orf3Q8WVX3 66 aa10.16□□□□□ -0.78
HMGB1-202ENST00000339872 C20orf173Q96LM9 149 aa10.16□□□□□ -0.78
HMGB1-202ENST00000339872 GPR61Q9BZJ8 451 aa10.16□□□□□ -0.78
HMGB1-202ENST00000339872 NAT8BQ9UHF3 227 aa10.16□□□□□ -0.78
HMGB1-202ENST00000339872 OTOGQ6ZRI0 2925 aa10.15□□□□□ -0.78
HMGB1-202ENST00000339872 C5orf52A6NGY3 159 aa10.15□□□□□ -0.78
HMGB1-202ENST00000339872 HIGD1CA8MV81 97 aa10.15□□□□□ -0.78
HMGB1-202ENST00000339872 A8MWL6 223 aa10.15□□□□□ -0.78
HMGB1-202ENST00000339872 LGALS9O00182 355 aa10.15□□□□□ -0.78
HMGB1-202ENST00000339872 FRMD6-AS1P0C7T7 363 aa10.15□□□□□ -0.78
HMGB1-202ENST00000339872 CBLN1P23435 193 aa10.15□□□□□ -0.78
HMGB1-202ENST00000339872 CRIP1P50238 77 aa10.15□□□□□ -0.78
HMGB1-202ENST00000339872 MRPL54Q6P161 138 aaKnown RBP10.15□□□□□ -0.78
HMGB1-202ENST00000339872 KLHL30-AS1Q8NEE0 82 aa10.15□□□□□ -0.78
HMGB1-202ENST00000339872 NUP35Q8NFH5 326 aa10.15□□□□□ -0.78
HMGB1-202ENST00000339872 OR4B1Q8NGF8 309 aa10.15□□□□□ -0.78
HMGB1-202ENST00000339872 OR2D3Q8NGH3 330 aa10.15□□□□□ -0.78
HMGB1-202ENST00000339872 NDFIP1Q9BT67 221 aa10.15□□□□□ -0.78
HMGB1-202ENST00000339872 NOTCH2Q04721 2471 aa10.15□□□□□ -0.78
HMGB1-202ENST00000339872 SLURP1P55000 103 aa10.15□□□□□ -0.79
HMGB1-202ENST00000339872 NDUFA6P56556 154 aa10.15□□□□□ -0.79
HMGB1-202ENST00000339872 OR11H1Q8NG94 326 aa10.14□□□□□ -0.79
HMGB1-202ENST00000339872 DUX3Q96PT4 197 aa10.14□□□□□ -0.79
HMGB1-202ENST00000339872 HIVEP2P31629 2446 aa10.14□□□□□ -0.79
HMGB1-202ENST00000339872 MTORP42345 2549 aa10.13□□□□□ -0.79
HMGB1-202ENST00000339872 SNURFLB1AK76 121 aa10.13□□□□□ -0.79
HMGB1-202ENST00000339872 LINC01619G3V211 115 aa10.13□□□□□ -0.79
HMGB1-202ENST00000339872 TMEM78Q5T7P6 136 aa10.13□□□□□ -0.79
HMGB1-202ENST00000339872 C11orf44Q8N8P7 122 aa10.13□□□□□ -0.79
HMGB1-202ENST00000339872 DPF1Q92782 380 aa10.13□□□□□ -0.79
HMGB1-202ENST00000339872 AGPAT4-IT1Q9H0P7 198 aa10.13□□□□□ -0.79
HMGB1-202ENST00000339872 SH2D1AO60880 128 aa10.13□□□□□ -0.79
HMGB1-202ENST00000339872 GZMBP10144 247 aa10.13□□□□□ -0.79
HMGB1-202ENST00000339872 KLF5Q13887 457 aaPredicted RBP10.13□□□□□ -0.79
HMGB1-202ENST00000339872 FAM162BQ5T6X4 162 aa10.13□□□□□ -0.79
HMGB1-202ENST00000339872 COX8CQ7Z4L0 72 aa10.13□□□□□ -0.79
HMGB1-202ENST00000339872 LINC01006Q8NI28 216 aa10.13□□□□□ -0.79
HMGB1-202ENST00000339872 WIPF2Q8TF74 440 aaPredicted RBP10.13□□□□□ -0.79
HMGB1-202ENST00000339872 GTSF1Q8WW33 167 aa10.13□□□□□ -0.79
HMGB1-202ENST00000339872 ZNF705DP0CH99 300 aaPredicted RBP10.12□□□□□ -0.79
HMGB1-202ENST00000339872 ZNF705BP0CI00 300 aaPredicted RBP10.12□□□□□ -0.79
HMGB1-202ENST00000339872 RAB4BP61018 213 aa10.12□□□□□ -0.79
HMGB1-202ENST00000339872 SMUG1Q53HV7 270 aa10.12□□□□□ -0.79
HMGB1-202ENST00000339872 OR1N2Q8NGR9 330 aa10.12□□□□□ -0.79
HMGB1-202ENST00000339872 C16orf95Q9H693 158 aa10.12□□□□□ -0.79
HMGB1-202ENST00000339872 C2orf70A6NJV1 201 aa10.12□□□□□ -0.79
HMGB1-202ENST00000339872 INAFM1C9JVW0 142 aa10.12□□□□□ -0.79
HMGB1-202ENST00000339872 UBE2CO00762 179 aa10.12□□□□□ -0.79
HMGB1-202ENST00000339872 ZNF80P51504 273 aaPredicted RBP10.12□□□□□ -0.79
HMGB1-202ENST00000339872 ZNF138P52744 262 aa10.12□□□□□ -0.79
HMGB1-202ENST00000339872 C9orf47Q6ZRZ4 202 aa10.12□□□□□ -0.79
HMGB1-202ENST00000339872 WFDC3Q8IUB2 231 aa10.12□□□□□ -0.79
HMGB1-202ENST00000339872 GNB1LQ9BYB4 327 aa10.12□□□□□ -0.79
HMGB1-202ENST00000339872 GFRA4Q9GZZ7 299 aa10.12□□□□□ -0.79
HMGB1-202ENST00000339872 MRPL18Q9H0U6 180 aaKnown RBP10.12□□□□□ -0.79
HMGB1-202ENST00000339872 CD28P10747 220 aa10.11□□□□□ -0.79
HMGB1-202ENST00000339872 WDR73Q6P4I2 378 aa10.11□□□□□ -0.79
HMGB1-202ENST00000339872 DCANP1Q8TF63 244 aa10.11□□□□□ -0.79
HMGB1-202ENST00000339872 PGLYRP4Q96LB8 373 aa10.11□□□□□ -0.79
HMGB1-202ENST00000339872 JMJD8Q96S16 334 aa10.11□□□□□ -0.79
HMGB1-202ENST00000339872 A0A1W2PRX2 142 aa10.11□□□□□ -0.79
HMGB1-202ENST00000339872 HAX1O00165 279 aa10.11□□□□□ -0.79
HMGB1-202ENST00000339872 TFPI2P48307 235 aa10.11□□□□□ -0.79
HMGB1-202ENST00000339872 DEFB1P60022 68 aa10.11□□□□□ -0.79
HMGB1-202ENST00000339872 TMEM136Q6ZRR5 245 aa10.11□□□□□ -0.79
HMGB1-202ENST00000339872 MS4A6AQ9H2W1 248 aa10.11□□□□□ -0.79
HMGB1-202ENST00000339872 M0QZ24 198 aa10.1□□□□□ -0.79
HMGB1-202ENST00000339872 OVOL1O14753 267 aa10.1□□□□□ -0.79
HMGB1-202ENST00000339872 MT-ND6P03923 174 aa10.1□□□□□ -0.79
HMGB1-202ENST00000339872 AKR1D1P51857 326 aa10.1□□□□□ -0.79
HMGB1-202ENST00000339872 COX19Q49B96 90 aa10.1□□□□□ -0.79
HMGB1-202ENST00000339872 RBPMS2Q6ZRY4 209 aaKnown RBP10.1□□□□□ -0.79
HMGB1-202ENST00000339872 OR10J6PQ8NGY7 276 aa10.1□□□□□ -0.79
HMGB1-202ENST00000339872 TMSB15BA0A087X1C1 80 aa10.1□□□□□ -0.79
HMGB1-202ENST00000339872 TMEM189A5PLL7 270 aa10.1□□□□□ -0.79
HMGB1-202ENST00000339872 FAM231BA6NCW3 169 aa10.1□□□□□ -0.79
HMGB1-202ENST00000339872 ID1P41134 155 aa10.1□□□□□ -0.79
HMGB1-202ENST00000339872 SAMD13Q5VXD3 122 aa10.1□□□□□ -0.79
HMGB1-202ENST00000339872 NF1P21359 2839 aa10.09□□□□□ -0.79
HMGB1-202ENST00000339872 F6UB75 175 aa10.09□□□□□ -0.79
HMGB1-202ENST00000339872 CAMPP49913 170 aa10.09□□□□□ -0.79
HMGB1-202ENST00000339872 HIST1H1AQ02539 215 aaPredicted RBP10.09□□□□□ -0.79
HMGB1-202ENST00000339872 RASL11AQ6T310 242 aa10.09□□□□□ -0.79
HMGB1-202ENST00000339872 ATP5L2Q7Z4Y8 100 aa10.09□□□□□ -0.79
HMGB1-202ENST00000339872 XKRY2A2RUG3 117 aa10.08□□□□□ -0.8
HMGB1-202ENST00000339872 HLA-DQA1P01909 254 aa10.08□□□□□ -0.8
HMGB1-202ENST00000339872 HOXA5P20719 270 aa10.08□□□□□ -0.8
HMGB1-202ENST00000339872 ADAMTSL5Q6ZMM2 481 aa10.08□□□□□ -0.8
HMGB1-202ENST00000339872 OR9G4Q8NGQ1 327 aa10.08□□□□□ -0.8
HMGB1-202ENST00000339872 WFDC12Q8WWY7 111 aa10.08□□□□□ -0.8
HMGB1-202ENST00000339872 DLX4Q92988 240 aaPredicted RBP10.08□□□□□ -0.8
HMGB1-202ENST00000339872 CITED2Q99967 270 aaPredicted RBP10.08□□□□□ -0.8
HMGB1-202ENST00000339872 PEMTQ9UBM1 199 aa10.08□□□□□ -0.8
HMGB1-202ENST00000339872 FABP5P3A8MUU1 101 aa10.08□□□□□ -0.8
HMGB1-202ENST00000339872 GFI1BQ5VTD9 330 aa10.08□□□□□ -0.8
HMGB1-202ENST00000339872 OR8A1Q8NGG7 326 aa10.08□□□□□ -0.8
HMGB1-202ENST00000339872 TPPP3Q9BW30 176 aa10.08□□□□□ -0.8
HMGB1-202ENST00000339872 A0A1B0GXF2 115 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 134 ms