RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 IGLC6P0CF74 106 aa17.06■□□□□ 0.32
SHMT1-201ENST00000316694 FGF6P10767 208 aa17.06■□□□□ 0.32
SHMT1-201ENST00000316694 UQCRFS1P47985 274 aa17.06■□□□□ 0.32
SHMT1-201ENST00000316694 TMEM97Q5BJF2 176 aa17.06■□□□□ 0.32
SHMT1-201ENST00000316694 IFI27L1Q96BM0 104 aa17.06■□□□□ 0.32
SHMT1-201ENST00000316694 RAXQ9Y2V3 346 aa17.06■□□□□ 0.32
SHMT1-201ENST00000316694 FBLL1A6NHQ2 334 aaKnown RBP17.05■□□□□ 0.32
SHMT1-201ENST00000316694 ZFP36P26651 326 aaKnown RBP17.05■□□□□ 0.32
SHMT1-201ENST00000316694 PAX8Q06710 450 aa17.05■□□□□ 0.32
SHMT1-201ENST00000316694 ECSCRQ19T08 205 aa17.05■□□□□ 0.32
SHMT1-201ENST00000316694 C15orf32Q32M92 178 aa17.05■□□□□ 0.32
SHMT1-201ENST00000316694 PRSS57Q6UWY2 283 aa17.05■□□□□ 0.32
SHMT1-201ENST00000316694 ZNF575Q86XF7 245 aa17.05■□□□□ 0.32
SHMT1-201ENST00000316694 RNF182Q8N6D2 247 aa17.05■□□□□ 0.32
SHMT1-201ENST00000316694 IGHV3-66A0A0C4DH42 116 aa17.04■□□□□ 0.32
SHMT1-201ENST00000316694 C7orf71A4D174 169 aa17.04■□□□□ 0.32
SHMT1-201ENST00000316694 ARL6IP6Q8N6S5 226 aa17.04■□□□□ 0.32
SHMT1-201ENST00000316694 TRAV8-6A0A0B4J262 113 aa17.04■□□□□ 0.32
SHMT1-201ENST00000316694 PRAC2D3DTV9 90 aa17.04■□□□□ 0.32
SHMT1-201ENST00000316694 RNF151Q2KHN1 245 aa17.04■□□□□ 0.32
SHMT1-201ENST00000316694 C11orf71Q6IPW1 123 aa17.04■□□□□ 0.32
SHMT1-201ENST00000316694 C18orf15Q96N68 181 aa17.04■□□□□ 0.32
SHMT1-201ENST00000316694 MSRB2Q9Y3D2 182 aa17.04■□□□□ 0.32
SHMT1-201ENST00000316694 GAS8-AS1O95177 125 aa17.03■□□□□ 0.32
SHMT1-201ENST00000316694 PPIFP30405 207 aaKnown RBP17.03■□□□□ 0.32
SHMT1-201ENST00000316694 DPF1Q92782 380 aa17.03■□□□□ 0.32
SHMT1-201ENST00000316694 FABP5P3A8MUU1 101 aa17.03■□□□□ 0.32
SHMT1-201ENST00000316694 Q8N9W7 124 aa17.03■□□□□ 0.32
SHMT1-201ENST00000316694 OR1N2Q8NGR9 330 aa17.03■□□□□ 0.32
SHMT1-201ENST00000316694 IGHV3OR16-13A0A075B7E8 117 aa17.02■□□□□ 0.32
SHMT1-201ENST00000316694 IGHV3-74A0A0B4J1X5 117 aa17.02■□□□□ 0.32
SHMT1-201ENST00000316694 NDUFS7O75251 213 aa17.02■□□□□ 0.32
SHMT1-201ENST00000316694 EBI3Q14213 229 aa17.02■□□□□ 0.32
SHMT1-201ENST00000316694 MINOS1Q5TGZ0 78 aa17.02■□□□□ 0.32
SHMT1-201ENST00000316694 PEF1Q9UBV8 284 aaKnown RBP17.02■□□□□ 0.32
SHMT1-201ENST00000316694 MINOS1-NBL1R4GNA1 71 aa17.02■□□□□ 0.32
SHMT1-201ENST00000316694 OOSP1A8MZH6 123 aa17.02■□□□□ 0.31
SHMT1-201ENST00000316694 CLEC3BP05452 202 aa17.02■□□□□ 0.31
SHMT1-201ENST00000316694 RNF185Q96GF1 192 aa17.02■□□□□ 0.31
SHMT1-201ENST00000316694 C1orf122Q6ZSJ8 110 aa17.01■□□□□ 0.31
SHMT1-201ENST00000316694 MAP1LC3AQ9H492 121 aa17.01■□□□□ 0.31
SHMT1-201ENST00000316694 EVI2AP22794 236 aa17.01■□□□□ 0.31
SHMT1-201ENST00000316694 NMUP48645 174 aa17.01■□□□□ 0.31
SHMT1-201ENST00000316694 SEC11AP67812 179 aa17.01■□□□□ 0.31
SHMT1-201ENST00000316694 IL17RELQ6ZVW7 336 aa17.01■□□□□ 0.31
SHMT1-201ENST00000316694 BOD1L2Q8IYS8 172 aa17.01■□□□□ 0.31
SHMT1-201ENST00000316694 DKK2Q9UBU2 259 aa17.01■□□□□ 0.31
SHMT1-201ENST00000316694 SMAD7O15105 426 aaKnown RBP16.99■□□□□ 0.31
SHMT1-201ENST00000316694 S100A7P31151 101 aa16.99■□□□□ 0.31
SHMT1-201ENST00000316694 ZNF502Q8TBZ5 544 aa16.99■□□□□ 0.31
SHMT1-201ENST00000316694 SPTBN4Q9H254 2564 aa16.99■□□□□ 0.31
SHMT1-201ENST00000316694 A1L4Q6 167 aa16.98■□□□□ 0.31
SHMT1-201ENST00000316694 ATP6V0E1O15342 81 aa16.98■□□□□ 0.31
SHMT1-201ENST00000316694 BUB3O43684 328 aa16.98■□□□□ 0.31
SHMT1-201ENST00000316694 CDKN1BP46527 198 aa16.98■□□□□ 0.31
SHMT1-201ENST00000316694 KLRB1Q12918 225 aa16.98■□□□□ 0.31
SHMT1-201ENST00000316694 CST9LQ9H4G1 147 aa16.98■□□□□ 0.31
SHMT1-201ENST00000316694 ZFAND3Q9H8U3 227 aa16.98■□□□□ 0.31
SHMT1-201ENST00000316694 IGHV3-49A0A0A0MS15 119 aa16.98■□□□□ 0.31
SHMT1-201ENST00000316694 LEPP41159 167 aa16.98■□□□□ 0.31
SHMT1-201ENST00000316694 PCP2Q8IVA1 136 aa16.98■□□□□ 0.31
SHMT1-201ENST00000316694 FAM110DQ8TAY7 271 aaPredicted RBP16.98■□□□□ 0.31
SHMT1-201ENST00000316694 CLEC19AQ6UXS0 136 aa16.97■□□□□ 0.31
SHMT1-201ENST00000316694 CNFNQ9BYD5 112 aa16.97■□□□□ 0.31
SHMT1-201ENST00000316694 ZFHX3Q15911 3703 aa16.97■□□□□ 0.31
SHMT1-201ENST00000316694 AKAP6Q13023 2319 aa16.97■□□□□ 0.31
SHMT1-201ENST00000316694 TNFRSF6BO95407 300 aa16.97■□□□□ 0.31
SHMT1-201ENST00000316694 PPBPP02775 128 aa16.97■□□□□ 0.31
SHMT1-201ENST00000316694 GATA1P15976 413 aaPredicted RBP16.97■□□□□ 0.31
SHMT1-201ENST00000316694 SRSF2Q01130 221 aaKnown RBP16.97■□□□□ 0.31
SHMT1-201ENST00000316694 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa16.97■□□□□ 0.31
SHMT1-201ENST00000316694 GOSR1O95249 250 aa16.96■□□□□ 0.31
SHMT1-201ENST00000316694 SIRPDQ9H106 197 aa16.96■□□□□ 0.31
SHMT1-201ENST00000316694 G3V318 75 aa16.96■□□□□ 0.31
SHMT1-201ENST00000316694 ZNF207O43670 478 aaKnown RBP16.96■□□□□ 0.31
SHMT1-201ENST00000316694 LINC01559Q495D7 138 aa16.96■□□□□ 0.31
SHMT1-201ENST00000316694 A6NDN8 102 aa16.95■□□□□ 0.3
SHMT1-201ENST00000316694 OR9G4Q8NGQ1 327 aa16.95■□□□□ 0.3
SHMT1-201ENST00000316694 PSMG3-AS1Q96PY0 264 aa16.95■□□□□ 0.3
SHMT1-201ENST00000316694 A0A1W2PPR1 153 aa16.95■□□□□ 0.3
SHMT1-201ENST00000316694 GAGE12BA1L429 117 aa16.95■□□□□ 0.3
SHMT1-201ENST00000316694 AP1S3Q96PC3 154 aa16.95■□□□□ 0.3
SHMT1-201ENST00000316694 HSD52Q0P140 79 aa16.94■□□□□ 0.3
SHMT1-201ENST00000316694 NAA38Q9BRA0 125 aaKnown RBP16.94■□□□□ 0.3
SHMT1-201ENST00000316694 HIVEP3Q5T1R4 2406 aa16.94■□□□□ 0.3
SHMT1-201ENST00000316694 CLPSL1A2RUU4 121 aa16.94■□□□□ 0.3
SHMT1-201ENST00000316694 LINC01548A6NM66 108 aa16.94■□□□□ 0.3
SHMT1-201ENST00000316694 RAB9AP51151 201 aa16.94■□□□□ 0.3
SHMT1-201ENST00000316694 OCIAD2Q56VL3 154 aa16.94■□□□□ 0.3
SHMT1-201ENST00000316694 DTX2Q86UW9 622 aa16.94■□□□□ 0.3
SHMT1-201ENST00000316694 CCDC140Q96MF4 163 aa16.94■□□□□ 0.3
SHMT1-201ENST00000316694 IGKV3D-20A0A0C4DH25 116 aa16.93■□□□□ 0.3
SHMT1-201ENST00000316694 SLC50A1Q9BRV3 221 aa16.93■□□□□ 0.3
SHMT1-201ENST00000316694 AGPAT4-IT1Q9H0P7 198 aa16.93■□□□□ 0.3
SHMT1-201ENST00000316694 SELENOKQ9Y6D0 94 aa16.93■□□□□ 0.3
SHMT1-201ENST00000316694 GAGE10A6NGK3 116 aa16.93■□□□□ 0.3
SHMT1-201ENST00000316694 PRSS1P07477 247 aa16.93■□□□□ 0.3
SHMT1-201ENST00000316694 FCER1GP30273 86 aa16.93■□□□□ 0.3
SHMT1-201ENST00000316694 SAA4P35542 130 aa16.93■□□□□ 0.3
SHMT1-201ENST00000316694 ADAMTSL5Q6ZMM2 481 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms