RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 IGHV3-11P01762 117 aa12.29□□□□□ -0.44
SHH-201ENST00000297261 LGALS9BQ3B8N2 356 aa12.29□□□□□ -0.44
SHH-201ENST00000297261 LGALS9CQ6DKI2 356 aa12.29□□□□□ -0.44
SHH-201ENST00000297261 FXYD5Q96DB9 178 aa12.29□□□□□ -0.44
SHH-201ENST00000297261 C8orf49Q96NF6 230 aa12.29□□□□□ -0.44
SHH-201ENST00000297261 TLN1Q9Y490 2541 aaKnown RBP12.29□□□□□ -0.44
SHH-201ENST00000297261 IGKV3D-20A0A0C4DH25 116 aa12.29□□□□□ -0.44
SHH-201ENST00000297261 IGKV3OR2-268A0A0C4DH90 116 aa12.29□□□□□ -0.44
SHH-201ENST00000297261 DNAL4O96015 105 aa12.29□□□□□ -0.44
SHH-201ENST00000297261 PLNP26678 52 aa12.29□□□□□ -0.44
SHH-201ENST00000297261 MRPL51Q4U2R6 128 aaKnown RBP12.28□□□□□ -0.44
SHH-201ENST00000297261 TMEM155Q4W5P6 130 aa12.28□□□□□ -0.44
SHH-201ENST00000297261 CRIP3Q6Q6R5 217 aa12.28□□□□□ -0.44
SHH-201ENST00000297261 IGHV1-3A0A0C4DH29 117 aa12.28□□□□□ -0.44
SHH-201ENST00000297261 H7C1H1 209 aa12.28□□□□□ -0.44
SHH-201ENST00000297261 Q6ZPA2 131 aa12.28□□□□□ -0.44
SHH-201ENST00000297261 VGLL1Q99990 258 aa12.28□□□□□ -0.44
SHH-201ENST00000297261 C3orf36Q3SXR2 165 aa12.28□□□□□ -0.44
SHH-201ENST00000297261 LINC01559Q495D7 138 aa12.28□□□□□ -0.44
SHH-201ENST00000297261 ANKRD39Q53RE8 183 aa12.28□□□□□ -0.44
SHH-201ENST00000297261 C11orf53Q8IXP5 236 aa12.28□□□□□ -0.44
SHH-201ENST00000297261 IGLV3-9A0A075B6K5 115 aa12.27□□□□□ -0.44
SHH-201ENST00000297261 SSBP2P81877 361 aaPredicted RBP12.27□□□□□ -0.44
SHH-201ENST00000297261 MORN5Q5VZ52 161 aa12.27□□□□□ -0.44
SHH-201ENST00000297261 TRAV8-4A0A0B4J246 113 aa12.27□□□□□ -0.45
SHH-201ENST00000297261 ATP6V0BQ99437 205 aa12.27□□□□□ -0.45
SHH-201ENST00000297261 HAX1O00165 279 aa12.27□□□□□ -0.45
SHH-201ENST00000297261 NPYP01303 97 aa12.27□□□□□ -0.45
SHH-201ENST00000297261 CD7P09564 240 aa12.27□□□□□ -0.45
SHH-201ENST00000297261 ZNF672Q499Z4 452 aaPredicted RBP12.27□□□□□ -0.45
SHH-201ENST00000297261 ZNF562Q6V9R5 426 aa12.27□□□□□ -0.45
SHH-201ENST00000297261 C9JAW5 83 aa12.27□□□□□ -0.45
SHH-201ENST00000297261 KLF5Q13887 457 aaPredicted RBP12.27□□□□□ -0.45
SHH-201ENST00000297261 C14orf178Q8N769 122 aaPredicted RBP12.27□□□□□ -0.45
SHH-201ENST00000297261 NEU4Q8WWR8 484 aaPredicted RBP12.27□□□□□ -0.45
SHH-201ENST00000297261 LINC01549A6NIU2 74 aa12.26□□□□□ -0.45
SHH-201ENST00000297261 LINC00527Q9UJ94 153 aa12.26□□□□□ -0.45
SHH-201ENST00000297261 ANKHD1Q8IWZ3 2542 aaKnown RBP12.26□□□□□ -0.45
SHH-201ENST00000297261 LY6HO94772 140 aa12.26□□□□□ -0.45
SHH-201ENST00000297261 C17orf58Q2M2W7 97 aa12.26□□□□□ -0.45
SHH-201ENST00000297261 FAM106AQ4KMX7 169 aa12.26□□□□□ -0.45
SHH-201ENST00000297261 SH2D6Q7Z4S9 175 aa12.26□□□□□ -0.45
SHH-201ENST00000297261 TP73-AS1Q9UF72 201 aa12.26□□□□□ -0.45
SHH-201ENST00000297261 GNLYP22749 145 aa12.26□□□□□ -0.45
SHH-201ENST00000297261 LYPD1Q8N2G4 141 aa12.26□□□□□ -0.45
SHH-201ENST00000297261 WIPF2Q8TF74 440 aaPredicted RBP12.26□□□□□ -0.45
SHH-201ENST00000297261 DDB2Q92466 427 aa12.26□□□□□ -0.45
SHH-201ENST00000297261 MRPL35Q9NZE8 188 aaKnown RBP12.26□□□□□ -0.45
SHH-201ENST00000297261 TRAV21A0A0B4J279 112 aa12.25□□□□□ -0.45
SHH-201ENST00000297261 LYPD2Q6UXB3 125 aa12.25□□□□□ -0.45
SHH-201ENST00000297261 SHANK2-AS3Q9BTD1 123 aa12.25□□□□□ -0.45
SHH-201ENST00000297261 TPSG1Q9NRR2 321 aa12.25□□□□□ -0.45
SHH-201ENST00000297261 ERCC8Q13216 396 aa12.25□□□□□ -0.45
SHH-201ENST00000297261 EXPH5Q8NEV8 1989 aa12.25□□□□□ -0.45
SHH-201ENST00000297261 PRRC2CQ9Y520 2896 aaKnown RBP12.25□□□□□ -0.45
SHH-201ENST00000297261 F8W1H4 67 aa12.25□□□□□ -0.45
SHH-201ENST00000297261 CNTFRP26992 372 aa12.25□□□□□ -0.45
SHH-201ENST00000297261 GATA4P43694 442 aa12.25□□□□□ -0.45
SHH-201ENST00000297261 FAM120AOSQ5T036 256 aa12.25□□□□□ -0.45
SHH-201ENST00000297261 ZNF295-AS1Q8N0V1 137 aa12.25□□□□□ -0.45
SHH-201ENST00000297261 NPC2P61916 151 aa12.25□□□□□ -0.45
SHH-201ENST00000297261 SPRNQ5BIV9 151 aa12.25□□□□□ -0.45
SHH-201ENST00000297261 TNFRSF18Q9Y5U5 241 aa12.25□□□□□ -0.45
SHH-201ENST00000297261 TRBV19A0A075B6N1 114 aa12.24□□□□□ -0.45
SHH-201ENST00000297261 C15orf32Q32M92 178 aa12.24□□□□□ -0.45
SHH-201ENST00000297261 OR13C6PQ8NH95 151 aa12.24□□□□□ -0.45
SHH-201ENST00000297261 Q8NA96 180 aa12.24□□□□□ -0.45
SHH-201ENST00000297261 DNAH14Q0VDD8 3507 aa12.24□□□□□ -0.45
SHH-201ENST00000297261 K7EMI3 77 aa12.23□□□□□ -0.45
SHH-201ENST00000297261 IGLV2-14P01704 120 aa12.23□□□□□ -0.45
SHH-201ENST00000297261 TTTY13Q9BZ97 58 aa12.23□□□□□ -0.45
SHH-201ENST00000297261 NDUFS7O75251 213 aa12.23□□□□□ -0.45
SHH-201ENST00000297261 ADAMTS20P59510 1910 aa12.23□□□□□ -0.45
SHH-201ENST00000297261 IGLC1P0CG04 106 aa12.23□□□□□ -0.45
SHH-201ENST00000297261 SRD5A1P18405 259 aa12.23□□□□□ -0.45
SHH-201ENST00000297261 TNFRSF14Q92956 283 aa12.23□□□□□ -0.45
SHH-201ENST00000297261 NACAE9PAV3 2078 aa12.22□□□□□ -0.45
SHH-201ENST00000297261 COL8A2P25067 703 aa12.22□□□□□ -0.45
SHH-201ENST00000297261 ATP5J2P56134 94 aa12.22□□□□□ -0.45
SHH-201ENST00000297261 DIAPH2-AS1Q14236 149 aa12.22□□□□□ -0.45
SHH-201ENST00000297261 NDPQ00604 133 aa12.22□□□□□ -0.45
SHH-201ENST00000297261 DYNLRB2Q8TF09 96 aa12.22□□□□□ -0.45
SHH-201ENST00000297261 PRSS46E5RG02 174 aa12.22□□□□□ -0.45
SHH-201ENST00000297261 THBDP07204 575 aa12.22□□□□□ -0.45
SHH-201ENST00000297261 GRNP28799 593 aaKnown RBP12.22□□□□□ -0.45
SHH-201ENST00000297261 SRSF8Q9BRL6 282 aaKnown RBP12.22□□□□□ -0.45
SHH-201ENST00000297261 NDUFB8O95169 186 aa12.21□□□□□ -0.45
SHH-201ENST00000297261 SLC25A16P16260 332 aa12.21□□□□□ -0.45
SHH-201ENST00000297261 MSMPQ1L6U9 139 aa12.21□□□□□ -0.45
SHH-201ENST00000297261 C17orf77Q96MU5 243 aa12.21□□□□□ -0.45
SHH-201ENST00000297261 CACNA1AO00555 2505 aa12.21□□□□□ -0.45
SHH-201ENST00000297261 EFNA4P52798 201 aa12.21□□□□□ -0.45
SHH-201ENST00000297261 KLRD1Q13241 179 aa12.21□□□□□ -0.45
SHH-201ENST00000297261 RNF182Q8N6D2 247 aa12.21□□□□□ -0.45
SHH-201ENST00000297261 TMEM75Q8N9X5 138 aa12.21□□□□□ -0.45
SHH-201ENST00000297261 TNRC6AQ8NDV7 1962 aaKnown RBP12.21□□□□□ -0.45
SHH-201ENST00000297261 SNRPD3P62318 126 aaKnown RBP12.21□□□□□ -0.46
SHH-201ENST00000297261 KMT2EQ8IZD2 1858 aa12.21□□□□□ -0.46
SHH-201ENST00000297261 SCRT2Q9NQ03 307 aa12.21□□□□□ -0.46
SHH-201ENST00000297261 TRAV26-2A0A0B4J265 109 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 86.2 ms