RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 ZNF747Q9BV97 191 aa16.56■□□□□ 0.24
TRIM28-201ENST00000253024 MRPS16Q9Y3D3 137 aaKnown RBP16.56■□□□□ 0.24
TRIM28-201ENST00000253024 RNF151Q2KHN1 245 aa16.56■□□□□ 0.24
TRIM28-201ENST00000253024 BRD3OSQ6XYD6 125 aa16.56■□□□□ 0.24
TRIM28-201ENST00000253024 ZNF738Q8NE65 137 aa16.56■□□□□ 0.24
TRIM28-201ENST00000253024 NPBQ8NG41 125 aa16.56■□□□□ 0.24
TRIM28-201ENST00000253024 TTTY13Q9BZ97 58 aa16.56■□□□□ 0.24
TRIM28-201ENST00000253024 BPESC1Q9GZL8 116 aa16.56■□□□□ 0.24
TRIM28-201ENST00000253024 CFAP46Q8IYW2 2715 aa16.56■□□□□ 0.24
TRIM28-201ENST00000253024 PKD1L2Q7Z442 2459 aa16.55■□□□□ 0.24
TRIM28-201ENST00000253024 SAA4P35542 130 aa16.55■□□□□ 0.24
TRIM28-201ENST00000253024 ANKRD39Q53RE8 183 aa16.55■□□□□ 0.24
TRIM28-201ENST00000253024 RNASE8Q8TDE3 154 aaKnown RBP16.55■□□□□ 0.24
TRIM28-201ENST00000253024 HSPB8Q9UJY1 196 aa16.55■□□□□ 0.24
TRIM28-201ENST00000253024 MSRB2Q9Y3D2 182 aa16.55■□□□□ 0.24
TRIM28-201ENST00000253024 ODF3BA8MYP8 253 aa16.55■□□□□ 0.24
TRIM28-201ENST00000253024 A0A096LNJ9 63 aa16.54■□□□□ 0.24
TRIM28-201ENST00000253024 OR10AG1Q8NH19 301 aa16.54■□□□□ 0.24
TRIM28-201ENST00000253024 PPP1R14DQ9NXH3 145 aa16.54■□□□□ 0.24
TRIM28-201ENST00000253024 IGHG4P01861 327 aa16.54■□□□□ 0.24
TRIM28-201ENST00000253024 LCNL1Q6ZST4 164 aa16.54■□□□□ 0.24
TRIM28-201ENST00000253024 FER1L6-AS1Q8NA97 138 aa16.54■□□□□ 0.24
TRIM28-201ENST00000253024 TRAV26-2A0A0B4J265 109 aa16.53■□□□□ 0.24
TRIM28-201ENST00000253024 RPL7P18124 248 aaKnown RBP16.53■□□□□ 0.24
TRIM28-201ENST00000253024 Q8N9W7 124 aa16.53■□□□□ 0.24
TRIM28-201ENST00000253024 THYN1Q9P016 225 aa16.53■□□□□ 0.24
TRIM28-201ENST00000253024 NMUP48645 174 aa16.53■□□□□ 0.24
TRIM28-201ENST00000253024 RNF5Q99942 180 aa16.53■□□□□ 0.24
TRIM28-201ENST00000253024 GAGE1Q13065 139 aa16.53■□□□□ 0.24
TRIM28-201ENST00000253024 OR4C5Q8NGB2 326 aa16.52■□□□□ 0.24
TRIM28-201ENST00000253024 ACACBO00763 2458 aa16.52■□□□□ 0.24
TRIM28-201ENST00000253024 FAM104BQ5XKR9 115 aa16.52■□□□□ 0.23
TRIM28-201ENST00000253024 ORMDL3Q8N138 153 aa16.52■□□□□ 0.23
TRIM28-201ENST00000253024 FAM231BA6NCW3 169 aa16.51■□□□□ 0.23
TRIM28-201ENST00000253024 BVES-AS1Q5T3Y7 98 aa16.51■□□□□ 0.23
TRIM28-201ENST00000253024 K7EMI3 77 aa16.51■□□□□ 0.23
TRIM28-201ENST00000253024 C16orf54Q6UWD8 224 aa16.51■□□□□ 0.23
TRIM28-201ENST00000253024 ST20Q9HBF5 79 aa16.51■□□□□ 0.23
TRIM28-201ENST00000253024 SCRT2Q9NQ03 307 aa16.51■□□□□ 0.23
TRIM28-201ENST00000253024 UFC1Q9Y3C8 167 aa16.51■□□□□ 0.23
TRIM28-201ENST00000253024 TRAV30A0A087WSZ9 112 aa16.5■□□□□ 0.23
TRIM28-201ENST00000253024 CRXO43186 299 aaPredicted RBP16.5■□□□□ 0.23
TRIM28-201ENST00000253024 LY6EQ16553 131 aa16.5■□□□□ 0.23
TRIM28-201ENST00000253024 TTC9CQ8N5M4 171 aa16.5■□□□□ 0.23
TRIM28-201ENST00000253024 DKK2Q9UBU2 259 aa16.5■□□□□ 0.23
TRIM28-201ENST00000253024 C11orf71Q6IPW1 123 aa16.5■□□□□ 0.23
TRIM28-201ENST00000253024 MRPL52Q86TS9 123 aaKnown RBP16.5■□□□□ 0.23
TRIM28-201ENST00000253024 PIP4P2Q8N4L2 257 aa16.5■□□□□ 0.23
TRIM28-201ENST00000253024 AMMECR1LQ6DCA0 310 aa16.5■□□□□ 0.23
TRIM28-201ENST00000253024 RAB37Q96AX2 223 aa16.5■□□□□ 0.23
TRIM28-201ENST00000253024 ABCA2Q9BZC7 2435 aa16.49■□□□□ 0.23
TRIM28-201ENST00000253024 USP9XQ93008 2570 aaPredicted RBP16.49■□□□□ 0.23
TRIM28-201ENST00000253024 TLN2Q9Y4G6 2542 aa16.49■□□□□ 0.23
TRIM28-201ENST00000253024 M0R1W7 72 aa16.49■□□□□ 0.23
TRIM28-201ENST00000253024 IGF1P05019 195 aa16.49■□□□□ 0.23
TRIM28-201ENST00000253024 KLRB1Q12918 225 aa16.49■□□□□ 0.23
TRIM28-201ENST00000253024 CCDC144NLQ6NUI1 221 aa16.49■□□□□ 0.23
TRIM28-201ENST00000253024 PET117Q6UWS5 81 aa16.49■□□□□ 0.23
TRIM28-201ENST00000253024 IGHV3-11P01762 117 aa16.49■□□□□ 0.23
TRIM28-201ENST00000253024 WFDC12Q8WWY7 111 aa16.49■□□□□ 0.23
TRIM28-201ENST00000253024 RPL11P62913 178 aaKnown RBP16.48■□□□□ 0.23
TRIM28-201ENST00000253024 LYPD1Q8N2G4 141 aa16.48■□□□□ 0.23
TRIM28-201ENST00000253024 TRGV3P03979 118 aa16.48■□□□□ 0.23
TRIM28-201ENST00000253024 PSG9Q00887 426 aa16.48■□□□□ 0.23
TRIM28-201ENST00000253024 NOTCH3Q9UM47 2321 aa16.48■□□□□ 0.23
TRIM28-201ENST00000253024 C19orf84I3L1E1 186 aa16.47■□□□□ 0.23
TRIM28-201ENST00000253024 PAX2Q02962 417 aa16.47■□□□□ 0.23
TRIM28-201ENST00000253024 PCP2Q8IVA1 136 aa16.47■□□□□ 0.23
TRIM28-201ENST00000253024 GLMPQ8WWB7 406 aa16.47■□□□□ 0.23
TRIM28-201ENST00000253024 TAX1BP3O14907 124 aa16.47■□□□□ 0.23
TRIM28-201ENST00000253024 UBE2V1Q13404 147 aa16.47■□□□□ 0.23
TRIM28-201ENST00000253024 C11orf21Q9P2W6 132 aa16.47■□□□□ 0.23
TRIM28-201ENST00000253024 LINC01545Q5VT33 79 aa16.47■□□□□ 0.23
TRIM28-201ENST00000253024 SRD5A1P18405 259 aa16.46■□□□□ 0.23
TRIM28-201ENST00000253024 CCDC140Q96MF4 163 aa16.46■□□□□ 0.23
TRIM28-201ENST00000253024 TRBV12-3P01733 135 aa16.46■□□□□ 0.23
TRIM28-201ENST00000253024 ORAOV1Q8WV07 137 aa16.46■□□□□ 0.23
TRIM28-201ENST00000253024 K7EP13 123 aa16.45■□□□□ 0.22
TRIM28-201ENST00000253024 ZNF575Q86XF7 245 aa16.45■□□□□ 0.22
TRIM28-201ENST00000253024 SRSF8Q9BRL6 282 aaKnown RBP16.45■□□□□ 0.22
TRIM28-201ENST00000253024 KLK15Q9H2R5 256 aa16.45■□□□□ 0.22
TRIM28-201ENST00000253024 PDE6HQ13956 83 aa16.44■□□□□ 0.22
TRIM28-201ENST00000253024 SAPCD1Q5SSQ6 148 aa16.44■□□□□ 0.22
TRIM28-201ENST00000253024 Q8N6K4 173 aa16.44■□□□□ 0.22
TRIM28-201ENST00000253024 AGPAT4-IT1Q9H0P7 198 aa16.44■□□□□ 0.22
TRIM28-201ENST00000253024 LEPP41159 167 aa16.44■□□□□ 0.22
TRIM28-201ENST00000253024 FBXL19-AS1Q494R0 122 aa16.44■□□□□ 0.22
TRIM28-201ENST00000253024 C2orf91Q6ZV80 131 aa16.44■□□□□ 0.22
TRIM28-201ENST00000253024 SIRPDQ9H106 197 aa16.44■□□□□ 0.22
TRIM28-201ENST00000253024 SETD2Q9BYW2 2564 aaPredicted RBP16.43■□□□□ 0.22
TRIM28-201ENST00000253024 BUB3O43684 328 aa16.43■□□□□ 0.22
TRIM28-201ENST00000253024 TRAV8-6A0A0B4J262 113 aa16.43■□□□□ 0.22
TRIM28-201ENST00000253024 PRSS1P07477 247 aa16.43■□□□□ 0.22
TRIM28-201ENST00000253024 IFI27L1Q96BM0 104 aa16.43■□□□□ 0.22
TRIM28-201ENST00000253024 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa16.42■□□□□ 0.22
TRIM28-201ENST00000253024 ZNF502Q8TBZ5 544 aa16.42■□□□□ 0.22
TRIM28-201ENST00000253024 C7orf71A4D174 169 aa16.41■□□□□ 0.22
TRIM28-201ENST00000253024 FABP5P3A8MUU1 101 aa16.41■□□□□ 0.22
TRIM28-201ENST00000253024 HBDP02042 147 aa16.41■□□□□ 0.22
TRIM28-201ENST00000253024 PIEZO1Q92508 2521 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms